ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart08a05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DR206_PEA (P13240) Disease resistance response protein 206 46 4e-05
2SYV_EHRRG (Q5FF72) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--t... 33 0.48
3SYV_EHRRW (Q5HC99) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--t... 32 0.63
4DPOD1_ORYSA (Q9LRE6) DNA polymerase delta catalytic subunit (EC ... 29 5.3
5PORIM_HUMAN (Q8N131) Porimin precursor (Transmembrane protein 12... 29 5.3
6EF1B_DROME (O96827) Probable elongation factor 1-beta (EF-1-beta) 29 5.3
7V70K_TYMVC (P28478) 69 kDa protein 29 5.3
8V70K_TYMVA (P20131) 69 kDa protein 29 5.3
9V70K_TYMV (P10357) 69 kDa protein 29 5.3
10PRGR_HUMAN (P06401) Progesterone receptor (PR) 29 6.9
11USH_DROME (Q9VPQ6) Zinc-finger protein ush (Protein U-shaped) 28 9.1
12NCOA6_HUMAN (Q14686) Nuclear receptor coactivator 6 (Amplified i... 28 9.1
13HEP_DROME (Q23977) Dual specificity mitogen-activated protein ki... 28 9.1
14MLL4_HUMAN (Q9UMN6) Myeloid/lymphoid or mixed-lineage leukemia p... 28 9.1
15MSG5_YEAST (P38590) Tyrosine-protein phosphatase MSG5 (EC 3.1.3.48) 28 9.1

>DR206_PEA (P13240) Disease resistance response protein 206|
          Length = 184

 Score = 46.2 bits (108), Expect = 4e-05
 Identities = 24/70 (34%), Positives = 37/70 (52%)
 Frame = -3

Query: 468 VGRAQGFYVASSQDGSSKTVVLTAMFGGEVHGDTLSFFGVHRMAASESRIAVIGGTGKYE 289
           VGRAQGFY+  +++  +  +  T +     H  T++F G   + A    I+V GGTG + 
Sbjct: 94  VGRAQGFYIYDTKNTYTSWLSFTFVLNSTHHQGTITFAGADPIVAKTRDISVTGGTGDFF 153

Query: 288 NAKGFAAIRT 259
             +G A I T
Sbjct: 154 MHRGIATITT 163



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>SYV_EHRRG (Q5FF72) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)|
           (ValRS)
          Length = 812

 Score = 32.7 bits (73), Expect = 0.48
 Identities = 26/107 (24%), Positives = 41/107 (38%), Gaps = 1/107 (0%)
 Frame = +2

Query: 74  KAVVIQDYKCSERRQSTI*PGSSNTWNIVALLVRAAAQER*MS-NWRRPSTPSSVACWSP 250
           K  ++ + KC+ER    I    SN W I  + V+    E+    NW   S    +  W  
Sbjct: 342 KEEILHNVKCAERSGMPIEILLSNQWFIKVVEVKHELLEQVRKINWYPQSMRKQIEMWID 401

Query: 251 GCSVRMAAKPLAFSYFPVPPMTAMRDSEAAIRCTPKKLSVSPCTSPP 391
           G +         +   P P   + RD+E  I     +L + P  + P
Sbjct: 402 GLNWDWCISRQRYFGIPFPVWYSKRDNEEIIIPDVNELPIDPTETLP 448



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>SYV_EHRRW (Q5HC99) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)|
           (ValRS)
          Length = 810

 Score = 32.3 bits (72), Expect = 0.63
 Identities = 25/107 (23%), Positives = 41/107 (38%), Gaps = 1/107 (0%)
 Frame = +2

Query: 74  KAVVIQDYKCSERRQSTI*PGSSNTWNIVALLVRAAAQER*MS-NWRRPSTPSSVACWSP 250
           K  ++ + KC+ER    I    SN W I  + ++    E+    NW   S    +  W  
Sbjct: 340 KEEILHNVKCAERSGMPIEILLSNQWFIKVVEIKHELLEQVRKINWYPQSMRKQIEMWID 399

Query: 251 GCSVRMAAKPLAFSYFPVPPMTAMRDSEAAIRCTPKKLSVSPCTSPP 391
           G +         +   P P   + RD+E  I     +L + P  + P
Sbjct: 400 GLNWDWCISRQRYFGIPFPVWYSKRDNEEIIIPDVNELPIDPTETLP 446



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>DPOD1_ORYSA (Q9LRE6) DNA polymerase delta catalytic subunit (EC 2.7.7.7)|
          Length = 1105

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = +2

Query: 164 LLVRAAAQER*MSNWRRPSTPSSVACWSPGCSVRMAAKPLAFSY 295
           LL R  A    +S WRRP+ P+ +A    GCS  +A + L   Y
Sbjct: 72  LLDRDEALASRLSRWRRPALPADLA---SGCSRNVAFQQLEIDY 112



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>PORIM_HUMAN (Q8N131) Porimin precursor (Transmembrane protein 123) (Pro-oncosis|
           receptor inducing membrane injury)
           (Keratinocytes-associated transmembrane protein 3)
           (KCT-3)
          Length = 208

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 21/62 (33%), Positives = 29/62 (46%)
 Frame = +2

Query: 224 PSSVACWSPGCSVRMAAKPLAFSYFPVPPMTAMRDSEAAIRCTPKKLSVSPCTSPPNMAV 403
           P+SVA  S   +V    KP A S    P M +   +   ++ TPK  SVS  TS  + + 
Sbjct: 74  PTSVASDSSNTTVT-TMKPTAASNTTTPGMVSTNMTSTTLKSTPKTTSVSQNTSQISTST 132

Query: 404 ST 409
            T
Sbjct: 133 MT 134



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>EF1B_DROME (O96827) Probable elongation factor 1-beta (EF-1-beta)|
          Length = 221

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 18/71 (25%), Positives = 29/71 (40%)
 Frame = +1

Query: 256 QRADGGEALGVLVLPRAADDGDAGLRSRHPVHPEEAERVAVHFAAEHGRQHDRLAAPVLR 435
           Q A G   +     P A DD D  L        EEAER+     A +  +  +  A + +
Sbjct: 76  QLAGGKPTVAAAAKPAADDDDDVDLFGSDDEEDEEAERIKQERVAAYAAKKSKKPALIAK 135

Query: 436 ARYVEPLRPAD 468
           +  +  ++P D
Sbjct: 136 SSVLLDVKPWD 146



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>V70K_TYMVC (P28478) 69 kDa protein|
          Length = 628

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +2

Query: 296 FPVPPMTAMRDSEAAIRCTPKKLSVSPCTSPPNMAVSTTV 415
           FP PP T  R  E+ I  +P    ++P  S P ++V T V
Sbjct: 462 FPTPPKTPTRTPESRITASP--TDIAPLDSDPVLSVRTEV 499



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>V70K_TYMVA (P20131) 69 kDa protein|
          Length = 628

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +2

Query: 296 FPVPPMTAMRDSEAAIRCTPKKLSVSPCTSPPNMAVSTTV 415
           FP PP T+ R  E+ I   P    ++P  S P ++V T V
Sbjct: 462 FPTPPKTSTRAPESCIAAPP--TDIAPLDSDPVLSVRTEV 499



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>V70K_TYMV (P10357) 69 kDa protein|
          Length = 628

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +2

Query: 296 FPVPPMTAMRDSEAAIRCTPKKLSVSPCTSPPNMAVSTTV 415
           FP PP T  R  E+ I  +P    ++P  S P ++V T V
Sbjct: 462 FPTPPKTPTRTPESRITASP--TDIAPLDSDPVLSVRTEV 499



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>PRGR_HUMAN (P06401) Progesterone receptor (PR)|
          Length = 933

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 7/54 (12%)
 Frame = +2

Query: 245 SPGCSVRMAAKPLAFSYFPV---PPM----TAMRDSEAAIRCTPKKLSVSPCTS 385
           SP   +   A P AF  FP+   PP+    T  R  EAA+   P   SVS  +S
Sbjct: 400 SPRSYLVAGANPAAFPDFPLGPPPPLPPRATPSRPGEAAVTAAPASASVSSASS 453



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>USH_DROME (Q9VPQ6) Zinc-finger protein ush (Protein U-shaped)|
          Length = 1191

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
 Frame = +2

Query: 278 PLAFSYFPVPPMTAMRDSEAAIRCTPKKLSVSPCTSPPNMAVSTTVLLLPSCEL---AT* 448
           P A +  P P M A+  + AA   +   L  +P + PP +A+ T  +++  C L   A+ 
Sbjct: 408 PQARNKTPTPAMVAVAAAAAAAAAS---LQATPHSHPPFLALPTHPIIIVPCSLIRAASF 464

Query: 449 NPCALPT 469
            P  LPT
Sbjct: 465 IPGPLPT 471



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>NCOA6_HUMAN (Q14686) Nuclear receptor coactivator 6 (Amplified in breast cancer|
            protein 3) (Cancer-amplified transcriptional coactivator
            ASC-2) (Activating signal cointegrator 2) (ASC-2)
            (Peroxisome proliferator-activated receptor-interacting
            protein) (P
          Length = 2063

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +2

Query: 278  PLAFSYFPVPPMTAMRDSEAAIRCTPKKLSVSPCTSPP 391
            P A S  P P +   R    + R TP +L   PCTS P
Sbjct: 1715 PNALSSSPAPNIQTGRPLVLSSRATPVQLPSPPCTSSP 1752



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>HEP_DROME (Q23977) Dual specificity mitogen-activated protein kinase kinase|
           hemipterous (EC 2.7.12.2) (MAPKK)
          Length = 1178

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 11/47 (23%), Positives = 24/47 (51%)
 Frame = +2

Query: 269 AAKPLAFSYFPVPPMTAMRDSEAAIRCTPKKLSVSPCTSPPNMAVST 409
           +  P   +Y P PP T    S+++ + T  +++++P +  P+    T
Sbjct: 822 STNPFHSNYVPPPPSTHSTSSQSSTQSTCSQIAINPASISPSSGSGT 868



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>MLL4_HUMAN (Q9UMN6) Myeloid/lymphoid or mixed-lineage leukemia protein 4|
            (Trithorax homolog 2)
          Length = 2715

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 5/62 (8%)
 Frame = +2

Query: 296  FPVPPMTAMRDSEAAIRCTPKKLSVSPCTSPPNMAVS-----TTVLLLPSCELAT*NPCA 460
            FP PP  + R S  A R  P + +  P  + P + V       T L   S ELA   P  
Sbjct: 1906 FPAPPRRSRRPSPLAPRPPPSRWASPPLKTSPQLRVPPPTSVVTALTPTSGELAPPGPAP 1965

Query: 461  LP 466
             P
Sbjct: 1966 SP 1967



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>MSG5_YEAST (P38590) Tyrosine-protein phosphatase MSG5 (EC 3.1.3.48)|
          Length = 489

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = +2

Query: 299 PVPPMTAMRDSEAAIRCTP---KKLSVSPCTSPPNMAVSTTVLLLPSCELAT 445
           P PP  +MR SEA+I   P   K  +VSP     +  VS+   L  S  L++
Sbjct: 88  PTPPSLSMRRSEASIYTLPTSLKNRTVSPSVYTKSSTVSSISKLSSSSPLSS 139


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,230,019
Number of Sequences: 219361
Number of extensions: 1011621
Number of successful extensions: 3265
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 3194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3262
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3072927439
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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