Clone Name | rbart08a05 |
---|---|
Clone Library Name | barley_pub |
>DR206_PEA (P13240) Disease resistance response protein 206| Length = 184 Score = 46.2 bits (108), Expect = 4e-05 Identities = 24/70 (34%), Positives = 37/70 (52%) Frame = -3 Query: 468 VGRAQGFYVASSQDGSSKTVVLTAMFGGEVHGDTLSFFGVHRMAASESRIAVIGGTGKYE 289 VGRAQGFY+ +++ + + T + H T++F G + A I+V GGTG + Sbjct: 94 VGRAQGFYIYDTKNTYTSWLSFTFVLNSTHHQGTITFAGADPIVAKTRDISVTGGTGDFF 153 Query: 288 NAKGFAAIRT 259 +G A I T Sbjct: 154 MHRGIATITT 163
>SYV_EHRRG (Q5FF72) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 812 Score = 32.7 bits (73), Expect = 0.48 Identities = 26/107 (24%), Positives = 41/107 (38%), Gaps = 1/107 (0%) Frame = +2 Query: 74 KAVVIQDYKCSERRQSTI*PGSSNTWNIVALLVRAAAQER*MS-NWRRPSTPSSVACWSP 250 K ++ + KC+ER I SN W I + V+ E+ NW S + W Sbjct: 342 KEEILHNVKCAERSGMPIEILLSNQWFIKVVEVKHELLEQVRKINWYPQSMRKQIEMWID 401 Query: 251 GCSVRMAAKPLAFSYFPVPPMTAMRDSEAAIRCTPKKLSVSPCTSPP 391 G + + P P + RD+E I +L + P + P Sbjct: 402 GLNWDWCISRQRYFGIPFPVWYSKRDNEEIIIPDVNELPIDPTETLP 448
>SYV_EHRRW (Q5HC99) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 810 Score = 32.3 bits (72), Expect = 0.63 Identities = 25/107 (23%), Positives = 41/107 (38%), Gaps = 1/107 (0%) Frame = +2 Query: 74 KAVVIQDYKCSERRQSTI*PGSSNTWNIVALLVRAAAQER*MS-NWRRPSTPSSVACWSP 250 K ++ + KC+ER I SN W I + ++ E+ NW S + W Sbjct: 340 KEEILHNVKCAERSGMPIEILLSNQWFIKVVEIKHELLEQVRKINWYPQSMRKQIEMWID 399 Query: 251 GCSVRMAAKPLAFSYFPVPPMTAMRDSEAAIRCTPKKLSVSPCTSPP 391 G + + P P + RD+E I +L + P + P Sbjct: 400 GLNWDWCISRQRYFGIPFPVWYSKRDNEEIIIPDVNELPIDPTETLP 446
>DPOD1_ORYSA (Q9LRE6) DNA polymerase delta catalytic subunit (EC 2.7.7.7)| Length = 1105 Score = 29.3 bits (64), Expect = 5.3 Identities = 17/44 (38%), Positives = 23/44 (52%) Frame = +2 Query: 164 LLVRAAAQER*MSNWRRPSTPSSVACWSPGCSVRMAAKPLAFSY 295 LL R A +S WRRP+ P+ +A GCS +A + L Y Sbjct: 72 LLDRDEALASRLSRWRRPALPADLA---SGCSRNVAFQQLEIDY 112
>PORIM_HUMAN (Q8N131) Porimin precursor (Transmembrane protein 123) (Pro-oncosis| receptor inducing membrane injury) (Keratinocytes-associated transmembrane protein 3) (KCT-3) Length = 208 Score = 29.3 bits (64), Expect = 5.3 Identities = 21/62 (33%), Positives = 29/62 (46%) Frame = +2 Query: 224 PSSVACWSPGCSVRMAAKPLAFSYFPVPPMTAMRDSEAAIRCTPKKLSVSPCTSPPNMAV 403 P+SVA S +V KP A S P M + + ++ TPK SVS TS + + Sbjct: 74 PTSVASDSSNTTVT-TMKPTAASNTTTPGMVSTNMTSTTLKSTPKTTSVSQNTSQISTST 132 Query: 404 ST 409 T Sbjct: 133 MT 134
>EF1B_DROME (O96827) Probable elongation factor 1-beta (EF-1-beta)| Length = 221 Score = 29.3 bits (64), Expect = 5.3 Identities = 18/71 (25%), Positives = 29/71 (40%) Frame = +1 Query: 256 QRADGGEALGVLVLPRAADDGDAGLRSRHPVHPEEAERVAVHFAAEHGRQHDRLAAPVLR 435 Q A G + P A DD D L EEAER+ A + + + A + + Sbjct: 76 QLAGGKPTVAAAAKPAADDDDDVDLFGSDDEEDEEAERIKQERVAAYAAKKSKKPALIAK 135 Query: 436 ARYVEPLRPAD 468 + + ++P D Sbjct: 136 SSVLLDVKPWD 146
>V70K_TYMVC (P28478) 69 kDa protein| Length = 628 Score = 29.3 bits (64), Expect = 5.3 Identities = 15/40 (37%), Positives = 21/40 (52%) Frame = +2 Query: 296 FPVPPMTAMRDSEAAIRCTPKKLSVSPCTSPPNMAVSTTV 415 FP PP T R E+ I +P ++P S P ++V T V Sbjct: 462 FPTPPKTPTRTPESRITASP--TDIAPLDSDPVLSVRTEV 499
>V70K_TYMVA (P20131) 69 kDa protein| Length = 628 Score = 29.3 bits (64), Expect = 5.3 Identities = 15/40 (37%), Positives = 21/40 (52%) Frame = +2 Query: 296 FPVPPMTAMRDSEAAIRCTPKKLSVSPCTSPPNMAVSTTV 415 FP PP T+ R E+ I P ++P S P ++V T V Sbjct: 462 FPTPPKTSTRAPESCIAAPP--TDIAPLDSDPVLSVRTEV 499
>V70K_TYMV (P10357) 69 kDa protein| Length = 628 Score = 29.3 bits (64), Expect = 5.3 Identities = 15/40 (37%), Positives = 21/40 (52%) Frame = +2 Query: 296 FPVPPMTAMRDSEAAIRCTPKKLSVSPCTSPPNMAVSTTV 415 FP PP T R E+ I +P ++P S P ++V T V Sbjct: 462 FPTPPKTPTRTPESRITASP--TDIAPLDSDPVLSVRTEV 499
>PRGR_HUMAN (P06401) Progesterone receptor (PR)| Length = 933 Score = 28.9 bits (63), Expect = 6.9 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 7/54 (12%) Frame = +2 Query: 245 SPGCSVRMAAKPLAFSYFPV---PPM----TAMRDSEAAIRCTPKKLSVSPCTS 385 SP + A P AF FP+ PP+ T R EAA+ P SVS +S Sbjct: 400 SPRSYLVAGANPAAFPDFPLGPPPPLPPRATPSRPGEAAVTAAPASASVSSASS 453
>USH_DROME (Q9VPQ6) Zinc-finger protein ush (Protein U-shaped)| Length = 1191 Score = 28.5 bits (62), Expect = 9.1 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 3/67 (4%) Frame = +2 Query: 278 PLAFSYFPVPPMTAMRDSEAAIRCTPKKLSVSPCTSPPNMAVSTTVLLLPSCEL---AT* 448 P A + P P M A+ + AA + L +P + PP +A+ T +++ C L A+ Sbjct: 408 PQARNKTPTPAMVAVAAAAAAAAAS---LQATPHSHPPFLALPTHPIIIVPCSLIRAASF 464 Query: 449 NPCALPT 469 P LPT Sbjct: 465 IPGPLPT 471
>NCOA6_HUMAN (Q14686) Nuclear receptor coactivator 6 (Amplified in breast cancer| protein 3) (Cancer-amplified transcriptional coactivator ASC-2) (Activating signal cointegrator 2) (ASC-2) (Peroxisome proliferator-activated receptor-interacting protein) (P Length = 2063 Score = 28.5 bits (62), Expect = 9.1 Identities = 15/38 (39%), Positives = 18/38 (47%) Frame = +2 Query: 278 PLAFSYFPVPPMTAMRDSEAAIRCTPKKLSVSPCTSPP 391 P A S P P + R + R TP +L PCTS P Sbjct: 1715 PNALSSSPAPNIQTGRPLVLSSRATPVQLPSPPCTSSP 1752
>HEP_DROME (Q23977) Dual specificity mitogen-activated protein kinase kinase| hemipterous (EC 2.7.12.2) (MAPKK) Length = 1178 Score = 28.5 bits (62), Expect = 9.1 Identities = 11/47 (23%), Positives = 24/47 (51%) Frame = +2 Query: 269 AAKPLAFSYFPVPPMTAMRDSEAAIRCTPKKLSVSPCTSPPNMAVST 409 + P +Y P PP T S+++ + T +++++P + P+ T Sbjct: 822 STNPFHSNYVPPPPSTHSTSSQSSTQSTCSQIAINPASISPSSGSGT 868
>MLL4_HUMAN (Q9UMN6) Myeloid/lymphoid or mixed-lineage leukemia protein 4| (Trithorax homolog 2) Length = 2715 Score = 28.5 bits (62), Expect = 9.1 Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 5/62 (8%) Frame = +2 Query: 296 FPVPPMTAMRDSEAAIRCTPKKLSVSPCTSPPNMAVS-----TTVLLLPSCELAT*NPCA 460 FP PP + R S A R P + + P + P + V T L S ELA P Sbjct: 1906 FPAPPRRSRRPSPLAPRPPPSRWASPPLKTSPQLRVPPPTSVVTALTPTSGELAPPGPAP 1965 Query: 461 LP 466 P Sbjct: 1966 SP 1967
>MSG5_YEAST (P38590) Tyrosine-protein phosphatase MSG5 (EC 3.1.3.48)| Length = 489 Score = 28.5 bits (62), Expect = 9.1 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 3/52 (5%) Frame = +2 Query: 299 PVPPMTAMRDSEAAIRCTP---KKLSVSPCTSPPNMAVSTTVLLLPSCELAT 445 P PP +MR SEA+I P K +VSP + VS+ L S L++ Sbjct: 88 PTPPSLSMRRSEASIYTLPTSLKNRTVSPSVYTKSSTVSSISKLSSSSPLSS 139 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,230,019 Number of Sequences: 219361 Number of extensions: 1011621 Number of successful extensions: 3265 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 3194 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3262 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3072927439 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)