ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart07h12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AB086416.1| Hordeum vulgare mRNA for O-methyltransferase, co... 551 e-154
2gb|AF033539.1|AF033539 Lolium perenne caffeic acid O-methyltrans... 86 1e-13
3gb|AC027510.7| Homo sapiens chromosome 18, clone RP11-118I2, com... 44 0.38
4gb|AC105104.7| Homo sapiens chromosome 18, clone RP11-909J22, co... 44 0.38
5gb|AC134978.4| Homo sapiens chromosome 18, clone RP11-671C19, co... 44 0.38
6gb|AC122893.6| Mus musculus BAC clone RP23-67C3 from chromosome ... 42 1.5
7gb|AC104323.27| Mus musculus strain C57BL/6J chromosome 17 clone... 42 1.5
8gb|DQ223971.1| Triticum aestivum flavonoid O-methyltransferase m... 40 5.9
9ref|NM_001017112.2| Xenopus tropicalis hypothetical protein LOC5... 40 5.9
10ref|XM_544643.2| PREDICTED: Canis familiaris similar to StAR-rel... 40 5.9
11gb|AC124494.4| Mus musculus BAC clone RP23-464P12 from chromosom... 40 5.9
12gb|AC112157.4| Mus musculus BAC clone RP24-103F14 from chromosom... 40 5.9
13emb|CR846088.7| Zebrafish DNA sequence from clone DKEY-189L3 in ... 40 5.9
14gb|AC023736.4| Drosophila melanogaster X BAC RP98-4P5 (Roswell P... 40 5.9
15dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
16dbj|AP004754.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
17ref|XM_561189.1| Anopheles gambiae str. PEST ENSANGP00000027706 ... 40 5.9
18emb|CR761206.2| Xenopus tropicalis finished cDNA, clone TEgg006f18 40 5.9
19gb|AE003443.2| Drosophila melanogaster chromosome X, section 27 ... 40 5.9 
>dbj|AB086416.1| Hordeum vulgare mRNA for O-methyltransferase, complete cds
          Length = 1372

 Score =  551 bits (278), Expect = e-154
 Identities = 287/290 (98%)
 Strand = Plus / Minus

                                                                        
Query: 152  atggcaaatgaggtggtagaaagcagctgcaggctcccagtagaagtgatagatcactct 211
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1212 atggcaaatgaggtggtagaaagcagcagcaggctcccagtagaagtgatagatcactct 1153

                                                                        
Query: 212  acttggtgtactccattgcccagaagttcgcaaagatgtagctggccttgacgcctgtaa 271
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1152 acttggtgtactccattgcccagaagttcgcaaagatgtagctggccttgacgcctgtaa 1093

                                                                        
Query: 272  accctgcagccttggctagcttctcgaagtccctgaggctcctttccttgccgccggggc 331
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1092 accctgcagccttggctagcttctcgaagtccctgaggttcctttccttgccgccggggc 1033

                                                                        
Query: 332  tgtacgccagcaagctggcgtccacacagattaacccctgcgcgttgtctgtcgcgtccg 391
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1032 tgtacgccagcaagctggcgtccacacagattaacccctgcgcgttgtttgtcgcgtccg 973

                                                              
Query: 392  ggttcactggcaggatacattccacgttgatcaccttaccatgcgcgggc 441
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 972  ggttcactggcaggatacattccacgttgatcaccttaccatgcgcgggc 923



 Score =  236 bits (119), Expect = 5e-59
 Identities = 128/131 (97%)
 Strand = Plus / Minus

                                                                        
Query: 1    ggacaaatatagggtggtcttggttccttattccaacacaagatacaaacatagactctt 60
            ||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1363 ggacaaatataggttgctcttgcttccttattccaacacaagatacaaacatagactctt 1304

                                                                        
Query: 61   gagttaacacccgacacgtacggtcgactaaaaacaagccatgaccaagaaatctaacaa 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1303 gagttaacacccgacacgtacggtcgactaaaaacaagccatgaccaagaaatctaacaa 1244

                       
Query: 121  aatggagggaa 131
            |||||||||||
Sbjct: 1243 aatggagggaa 1233
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>gb|AF033539.1|AF033539 Lolium perenne caffeic acid O-methyltransferase (OMT2) mRNA, complete
            cds
          Length = 1436

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 106/127 (83%)
 Strand = Plus / Minus

                                                                        
Query: 210  ctacttggtgtactccattgcccagaagttcgcaaagatgtagctggccttgacgcctgt 269
            |||||| ||||||||||| ||||||||||  || ||||||||| ||||| ||||||  ||
Sbjct: 1130 ctacttagtgtactccatggcccagaagtcggcgaagatgtaggtggccgtgacgctggt 1071

                                                                        
Query: 270  aaaccctgcagccttggctagcttctcgaagtccctgaggctcctttccttgccgccggg 329
            ||| || ||  ||||||| |||||||| | ||||||| ||  ||| ||||||||||| ||
Sbjct: 1070 aaagccggcgcccttggcgagcttctccaggtccctgtggtacctctccttgccgcccgg 1011

                   
Query: 330  gctgtac 336
            |||||||
Sbjct: 1010 gctgtac 1004
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>gb|AC027510.7| Homo sapiens chromosome 18, clone RP11-118I2, complete sequence
          Length = 159205

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 100   catgaccaagaaatctaacaaaatgg 125
             ||||||||||||||||||| ||||||
Sbjct: 45540 catgaccaagaaatctaactaaatgg 45565
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>gb|AC105104.7| Homo sapiens chromosome 18, clone RP11-909J22, complete sequence
          Length = 131296

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 100   catgaccaagaaatctaacaaaatgg 125
             ||||||||||||||||||| ||||||
Sbjct: 79114 catgaccaagaaatctaactaaatgg 79139
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>gb|AC134978.4| Homo sapiens chromosome 18, clone RP11-671C19, complete sequence
          Length = 177630

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 100    catgaccaagaaatctaacaaaatgg 125
              ||||||||||||||||||| ||||||
Sbjct: 132204 catgaccaagaaatctaactaaatgg 132229
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>gb|AC122893.6| Mus musculus BAC clone RP23-67C3 from chromosome 17, complete sequence
          Length = 206456

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 167    gtagaaagcagctgcaggctcccag 191
              |||||||||||||||||||| ||||
Sbjct: 111036 gtagaaagcagctgcaggctgccag 111060
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>gb|AC104323.27| Mus musculus strain C57BL/6J chromosome 17 clone rp23-114o8 map 17,
             complete sequence
          Length = 202430

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 167   gtagaaagcagctgcaggctcccag 191
             |||||||||||||||||||| ||||
Sbjct: 43602 gtagaaagcagctgcaggctgccag 43626
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>gb|DQ223971.1| Triticum aestivum flavonoid O-methyltransferase mRNA, complete cds
          Length = 1233

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                               
Query: 382 gtcgcgtccgggttcactggcaggatacattccacg 417
           ||||| ||||||||||| |||||||| || ||||||
Sbjct: 973 gtcgcctccgggttcacaggcaggatgcactccacg 938
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>ref|NM_001017112.2| Xenopus tropicalis hypothetical protein LOC549866 (LOC549866), mRNA
          Length = 1171

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 242 caaagatgtagctggccttg 261
           ||||||||||||||||||||
Sbjct: 316 caaagatgtagctggccttg 335
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>ref|XM_544643.2| PREDICTED: Canis familiaris similar to StAR-related lipid transfer
            protein 9 (StARD9) (START domain-containing protein 9)
            (LOC487519), mRNA
          Length = 13338

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 304  ctgaggctcctttccttgcc 323
            ||||||||||||||||||||
Sbjct: 2590 ctgaggctcctttccttgcc 2571
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>gb|AC124494.4| Mus musculus BAC clone RP23-464P12 from chromosome 13, complete sequence
          Length = 204177

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 99     ccatgaccaagaaatctaacaaaa 122
              ||||||||||| ||||||||||||
Sbjct: 127514 ccatgaccaaggaatctaacaaaa 127537
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>gb|AC112157.4| Mus musculus BAC clone RP24-103F14 from chromosome 13, complete sequence
          Length = 155757

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 99     ccatgaccaagaaatctaacaaaa 122
              ||||||||||| ||||||||||||
Sbjct: 127201 ccatgaccaaggaatctaacaaaa 127178
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>emb|CR846088.7| Zebrafish DNA sequence from clone DKEY-189L3 in linkage group 11,
             complete sequence
          Length = 162255

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 397   actggcaggatacattccac 416
             ||||||||||||||||||||
Sbjct: 19025 actggcaggatacattccac 19006
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>gb|AC023736.4| Drosophila melanogaster X BAC RP98-4P5 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 165052

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 105   ccaagaaatctaacaaaatg 124
             ||||||||||||||||||||
Sbjct: 68979 ccaagaaatctaacaaaatg 68960
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 321     gccgccggggctgtacgcca 340
               ||||||||||||||||||||
Sbjct: 5399480 gccgccggggctgtacgcca 5399499
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>dbj|AP004754.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0529B09
          Length = 138188

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 321   gccgccggggctgtacgcca 340
             ||||||||||||||||||||
Sbjct: 30414 gccgccggggctgtacgcca 30433
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>ref|XM_561189.1| Anopheles gambiae str. PEST ENSANGP00000027706
           (ENSANGG00000025110), partial mRNA
          Length = 351

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 331 ctgtacgccagcaagctggc 350
           ||||||||||||||||||||
Sbjct: 151 ctgtacgccagcaagctggc 170
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>emb|CR761206.2| Xenopus tropicalis finished cDNA, clone TEgg006f18
          Length = 1171

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 242 caaagatgtagctggccttg 261
           ||||||||||||||||||||
Sbjct: 316 caaagatgtagctggccttg 335
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>gb|AE003443.2| Drosophila melanogaster chromosome X, section 27 of 74 of the complete
              sequence
          Length = 299153

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 105    ccaagaaatctaacaaaatg 124
              ||||||||||||||||||||
Sbjct: 225861 ccaagaaatctaacaaaatg 225842


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,262,366
Number of Sequences: 3902068
Number of extensions: 3262366
Number of successful extensions: 66891
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66850
Number of HSP's gapped (non-prelim): 41
length of query: 441
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 419
effective length of database: 17,147,199,772
effective search space: 7184676704468
effective search space used: 7184676704468
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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