ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart07h07 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY106860.1| Zea mays PCO060792 mRNA sequence Length = 676 Score = 192 bits (97), Expect = 7e-46 Identities = 211/249 (84%) Strand = Plus / Minus Query: 181 ttggtggtgaaccggtaggacgcgtaggaaagcgtggcgttggaccagctgcggtggatg 240 ||||||||||||| ||||||||||||||| |||||| |||||||||||| ||||||| Sbjct: 333 ttggtggtgaacctgtaggacgcgtaggagagcgtgccgttggaccagcactggtggatc 274 Query: 241 agctccgccttggcgtccggcccggccgcgccgagcgcgacgtgcagcgggtacaagtgg 300 |||||||||| ||| | |||||| |||||||||||||||||||||||||| |||||| Sbjct: 273 tgctccgccttagcgccgtccccggcggcgccgagcgcgacgtgcagcgggtagaagtgg 214 Query: 301 tccggctgcgggtgcgccaccttggcgaacggcgccctctcctcgtaccgtttcacgtcg 360 |||||| ||||||||||||| | ||| ||||||| ||||||||||||| |||||||| Sbjct: 213 tccggccacgggtgcgccaccctcgcgtgcggcgccttctcctcgtaccgcttcacgtcc 154 Query: 361 tcgtgccgcccgttgagtaaagcctctctgagccaggcgtcgaactccgctgcccactcc 420 |||| || |||||||| | | || ||||||||| ||||||||| || ||||||| | Sbjct: 153 tcgtaccttccgttgaggagcgagtccttgagccaggtgtcgaactcggcggcccactgc 94 Query: 421 ggcacgggc 429 ||||||||| Sbjct: 93 ggcacgggc 85
>ref|NM_190141.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 801 Score = 167 bits (84), Expect = 4e-38 Identities = 206/244 (84%), Gaps = 2/244 (0%) Strand = Plus / Minus Query: 183 ggtggtgaaccggtaggacgcgtaggaaagcgtggcgttggaccagctgcggtggatgag 242 ||||||||| ||||| || |||||||| |||| ||||||| ||||||||||||||| || Sbjct: 789 ggtggtgaagcggtacgaggcgtaggagagcgaggcgttgctccagctgcggtggatcag 730 Query: 243 ctccgccttggcgtccggcccggccgcgccgagcgcgacgtgcagcgggtacaagtggtc 302 |||||||||||| || ||||| |||||||||||||||||||||||| |||||||| Sbjct: 729 ctccgccttggccccctcaccggcggcgccgagcgcgacgtgcagcgggaggaagtggtc 670 Query: 303 cggctgcgggtgcgccaccttggcgaacggcgccctctcctcgtaccgtttcacgtcgtc 362 ||| ||||||||||||| || || ||||||| ||||||||||||| ||||||||||| Sbjct: 669 aggcgacgggtgcgccaccctgccgtgcggcgccttctcctcgtaccgcttcacgtcgtc 610 Query: 363 gtgccgcccgttgagtaaagcctctctg-agccaggcgtcgaactccgctgcccactccg 421 ||||| |||| ||| | ||||| ||| ||||| ||||||||||||| ||||||| || Sbjct: 609 gtgcctcccgccgagcagcgcctc-ctgcagccacccgtcgaactccgccgcccactgcg 551 Query: 422 gcac 425 |||| Sbjct: 550 gcac 547
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 167 bits (84), Expect = 4e-38 Identities = 206/244 (84%), Gaps = 2/244 (0%) Strand = Plus / Plus Query: 183 ggtggtgaaccggtaggacgcgtaggaaagcgtggcgttggaccagctgcggtggatgag 242 ||||||||| ||||| || |||||||| |||| ||||||| ||||||||||||||| || Sbjct: 38132743 ggtggtgaagcggtacgaggcgtaggagagcgaggcgttgctccagctgcggtggatcag 38132802 Query: 243 ctccgccttggcgtccggcccggccgcgccgagcgcgacgtgcagcgggtacaagtggtc 302 |||||||||||| || ||||| |||||||||||||||||||||||| |||||||| Sbjct: 38132803 ctccgccttggccccctcaccggcggcgccgagcgcgacgtgcagcgggaggaagtggtc 38132862 Query: 303 cggctgcgggtgcgccaccttggcgaacggcgccctctcctcgtaccgtttcacgtcgtc 362 ||| ||||||||||||| || || ||||||| ||||||||||||| ||||||||||| Sbjct: 38132863 aggcgacgggtgcgccaccctgccgtgcggcgccttctcctcgtaccgcttcacgtcgtc 38132922 Query: 363 gtgccgcccgttgagtaaagcctctctg-agccaggcgtcgaactccgctgcccactccg 421 ||||| |||| ||| | ||||| ||| ||||| ||||||||||||| ||||||| || Sbjct: 38132923 gtgcctcccgccgagcagcgcctc-ctgcagccacccgtcgaactccgccgcccactgcg 38132981 Query: 422 gcac 425 |||| Sbjct: 38132982 gcac 38132985 Score = 165 bits (83), Expect = 2e-37 Identities = 164/191 (85%) Strand = Plus / Plus Query: 182 tggtggtgaaccggtaggacgcgtaggaaagcgtggcgttggaccagctgcggtggatga 241 |||||||||| ||||| ||||||| ||| ||||| |||||| ||||||| ||||||| | Sbjct: 38138291 tggtggtgaagcggtacgacgcgtgggagagcgtcgcgttgtaccagctatggtggatca 38138350 Query: 242 gctccgccttggcgtccggcccggccgcgccgagcgcgacgtgcagcgggtacaagtggt 301 ||||||||||||| ||| |||||| |||||||||||||||||||||||| ||||||| Sbjct: 38138351 gctccgccttggcatcctccccggcggcgccgagcgcgacgtgcagcgggaggaagtggt 38138410 Query: 302 ccggctgcgggtgcgccaccttggcgaacggcgccctctcctcgtaccgtttcacgtcgt 361 ||||| ||||||||||| ||| || ||||||| ||||||||||| | |||||||||| Sbjct: 38138411 ccggcgacgggtgcgccatcttaccgttcggcgccttctcctcgtactgcttcacgtcgt 38138470 Query: 362 cgtgccgcccg 372 |||||| |||| Sbjct: 38138471 cgtgcctcccg 38138481
>dbj|AP003261.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0471B04 Length = 138025 Score = 167 bits (84), Expect = 4e-38 Identities = 206/244 (84%), Gaps = 2/244 (0%) Strand = Plus / Plus Query: 183 ggtggtgaaccggtaggacgcgtaggaaagcgtggcgttggaccagctgcggtggatgag 242 ||||||||| ||||| || |||||||| |||| ||||||| ||||||||||||||| || Sbjct: 100777 ggtggtgaagcggtacgaggcgtaggagagcgaggcgttgctccagctgcggtggatcag 100836 Query: 243 ctccgccttggcgtccggcccggccgcgccgagcgcgacgtgcagcgggtacaagtggtc 302 |||||||||||| || ||||| |||||||||||||||||||||||| |||||||| Sbjct: 100837 ctccgccttggccccctcaccggcggcgccgagcgcgacgtgcagcgggaggaagtggtc 100896 Query: 303 cggctgcgggtgcgccaccttggcgaacggcgccctctcctcgtaccgtttcacgtcgtc 362 ||| ||||||||||||| || || ||||||| ||||||||||||| ||||||||||| Sbjct: 100897 aggcgacgggtgcgccaccctgccgtgcggcgccttctcctcgtaccgcttcacgtcgtc 100956 Query: 363 gtgccgcccgttgagtaaagcctctctg-agccaggcgtcgaactccgctgcccactccg 421 ||||| |||| ||| | ||||| ||| ||||| ||||||||||||| ||||||| || Sbjct: 100957 gtgcctcccgccgagcagcgcctc-ctgcagccacccgtcgaactccgccgcccactgcg 101015 Query: 422 gcac 425 |||| Sbjct: 101016 gcac 101019 Score = 165 bits (83), Expect = 2e-37 Identities = 164/191 (85%) Strand = Plus / Plus Query: 182 tggtggtgaaccggtaggacgcgtaggaaagcgtggcgttggaccagctgcggtggatga 241 |||||||||| ||||| ||||||| ||| ||||| |||||| ||||||| ||||||| | Sbjct: 106325 tggtggtgaagcggtacgacgcgtgggagagcgtcgcgttgtaccagctatggtggatca 106384 Query: 242 gctccgccttggcgtccggcccggccgcgccgagcgcgacgtgcagcgggtacaagtggt 301 ||||||||||||| ||| |||||| |||||||||||||||||||||||| ||||||| Sbjct: 106385 gctccgccttggcatcctccccggcggcgccgagcgcgacgtgcagcgggaggaagtggt 106444 Query: 302 ccggctgcgggtgcgccaccttggcgaacggcgccctctcctcgtaccgtttcacgtcgt 361 ||||| ||||||||||| ||| || ||||||| ||||||||||| | |||||||||| Sbjct: 106445 ccggcgacgggtgcgccatcttaccgttcggcgccttctcctcgtactgcttcacgtcgt 106504 Query: 362 cgtgccgcccg 372 |||||| |||| Sbjct: 106505 cgtgcctcccg 106515
>dbj|AP003227.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0018C10 Length = 200183 Score = 167 bits (84), Expect = 4e-38 Identities = 206/244 (84%), Gaps = 2/244 (0%) Strand = Plus / Plus Query: 183 ggtggtgaaccggtaggacgcgtaggaaagcgtggcgttggaccagctgcggtggatgag 242 ||||||||| ||||| || |||||||| |||| ||||||| ||||||||||||||| || Sbjct: 51977 ggtggtgaagcggtacgaggcgtaggagagcgaggcgttgctccagctgcggtggatcag 52036 Query: 243 ctccgccttggcgtccggcccggccgcgccgagcgcgacgtgcagcgggtacaagtggtc 302 |||||||||||| || ||||| |||||||||||||||||||||||| |||||||| Sbjct: 52037 ctccgccttggccccctcaccggcggcgccgagcgcgacgtgcagcgggaggaagtggtc 52096 Query: 303 cggctgcgggtgcgccaccttggcgaacggcgccctctcctcgtaccgtttcacgtcgtc 362 ||| ||||||||||||| || || ||||||| ||||||||||||| ||||||||||| Sbjct: 52097 aggcgacgggtgcgccaccctgccgtgcggcgccttctcctcgtaccgcttcacgtcgtc 52156 Query: 363 gtgccgcccgttgagtaaagcctctctg-agccaggcgtcgaactccgctgcccactccg 421 ||||| |||| ||| | ||||| ||| ||||| ||||||||||||| ||||||| || Sbjct: 52157 gtgcctcccgccgagcagcgcctc-ctgcagccacccgtcgaactccgccgcccactgcg 52215 Query: 422 gcac 425 |||| Sbjct: 52216 gcac 52219 Score = 165 bits (83), Expect = 2e-37 Identities = 164/191 (85%) Strand = Plus / Plus Query: 182 tggtggtgaaccggtaggacgcgtaggaaagcgtggcgttggaccagctgcggtggatga 241 |||||||||| ||||| ||||||| ||| ||||| |||||| ||||||| ||||||| | Sbjct: 57525 tggtggtgaagcggtacgacgcgtgggagagcgtcgcgttgtaccagctatggtggatca 57584 Query: 242 gctccgccttggcgtccggcccggccgcgccgagcgcgacgtgcagcgggtacaagtggt 301 ||||||||||||| ||| |||||| |||||||||||||||||||||||| ||||||| Sbjct: 57585 gctccgccttggcatcctccccggcggcgccgagcgcgacgtgcagcgggaggaagtggt 57644 Query: 302 ccggctgcgggtgcgccaccttggcgaacggcgccctctcctcgtaccgtttcacgtcgt 361 ||||| ||||||||||| ||| || ||||||| ||||||||||| | |||||||||| Sbjct: 57645 ccggcgacgggtgcgccatcttaccgttcggcgccttctcctcgtactgcttcacgtcgt 57704 Query: 362 cgtgccgcccg 372 |||||| |||| Sbjct: 57705 cgtgcctcccg 57715
>dbj|AK105779.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-G02, full insert sequence Length = 1190 Score = 167 bits (84), Expect = 4e-38 Identities = 206/244 (84%), Gaps = 2/244 (0%) Strand = Plus / Minus Query: 183 ggtggtgaaccggtaggacgcgtaggaaagcgtggcgttggaccagctgcggtggatgag 242 ||||||||| ||||| || |||||||| |||| ||||||| ||||||||||||||| || Sbjct: 939 ggtggtgaagcggtacgaggcgtaggagagcgaggcgttgctccagctgcggtggatcag 880 Query: 243 ctccgccttggcgtccggcccggccgcgccgagcgcgacgtgcagcgggtacaagtggtc 302 |||||||||||| || ||||| |||||||||||||||||||||||| |||||||| Sbjct: 879 ctccgccttggccccctcaccggcggcgccgagcgcgacgtgcagcgggaggaagtggtc 820 Query: 303 cggctgcgggtgcgccaccttggcgaacggcgccctctcctcgtaccgtttcacgtcgtc 362 ||| ||||||||||||| || || ||||||| ||||||||||||| ||||||||||| Sbjct: 819 aggcgacgggtgcgccaccctgccgtgcggcgccttctcctcgtaccgcttcacgtcgtc 760 Query: 363 gtgccgcccgttgagtaaagcctctctg-agccaggcgtcgaactccgctgcccactccg 421 ||||| |||| ||| | ||||| ||| ||||| ||||||||||||| ||||||| || Sbjct: 759 gtgcctcccgccgagcagcgcctc-ctgcagccacccgtcgaactccgccgcccactgcg 701 Query: 422 gcac 425 |||| Sbjct: 700 gcac 697
>dbj|AK104297.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-008-H10, full insert sequence Length = 1030 Score = 167 bits (84), Expect = 4e-38 Identities = 206/244 (84%), Gaps = 2/244 (0%) Strand = Plus / Minus Query: 183 ggtggtgaaccggtaggacgcgtaggaaagcgtggcgttggaccagctgcggtggatgag 242 ||||||||| ||||| || |||||||| |||| ||||||| ||||||||||||||| || Sbjct: 944 ggtggtgaagcggtacgaggcgtaggagagcgaggcgttgctccagctgcggtggatcag 885 Query: 243 ctccgccttggcgtccggcccggccgcgccgagcgcgacgtgcagcgggtacaagtggtc 302 |||||||||||| || ||||| |||||||||||||||||||||||| |||||||| Sbjct: 884 ctccgccttggccccctcaccggcggcgccgagcgcgacgtgcagcgggaggaagtggtc 825 Query: 303 cggctgcgggtgcgccaccttggcgaacggcgccctctcctcgtaccgtttcacgtcgtc 362 ||| ||||||||||||| || || ||||||| ||||||||||||| ||||||||||| Sbjct: 824 aggcgacgggtgcgccaccctgccgtgcggcgccttctcctcgtaccgcttcacgtcgtc 765 Query: 363 gtgccgcccgttgagtaaagcctctctg-agccaggcgtcgaactccgctgcccactccg 421 ||||| |||| ||| | ||||| ||| ||||| ||||||||||||| ||||||| || Sbjct: 764 gtgcctcccgccgagcagcgcctc-ctgcagccacccgtcgaactccgccgcccactgcg 706 Query: 422 gcac 425 |||| Sbjct: 705 gcac 702
>dbj|AK070438.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023053F07, full insert sequence Length = 1203 Score = 167 bits (84), Expect = 4e-38 Identities = 206/244 (84%), Gaps = 2/244 (0%) Strand = Plus / Minus Query: 183 ggtggtgaaccggtaggacgcgtaggaaagcgtggcgttggaccagctgcggtggatgag 242 ||||||||| ||||| || |||||||| |||| ||||||| ||||||||||||||| || Sbjct: 946 ggtggtgaagcggtacgaggcgtaggagagcgaggcgttgctccagctgcggtggatcag 887 Query: 243 ctccgccttggcgtccggcccggccgcgccgagcgcgacgtgcagcgggtacaagtggtc 302 |||||||||||| || ||||| |||||||||||||||||||||||| |||||||| Sbjct: 886 ctccgccttggccccctcaccggcggcgccgagcgcgacgtgcagcgggaggaagtggtc 827 Query: 303 cggctgcgggtgcgccaccttggcgaacggcgccctctcctcgtaccgtttcacgtcgtc 362 ||| ||||||||||||| || || ||||||| ||||||||||||| ||||||||||| Sbjct: 826 aggcgacgggtgcgccaccctgccgtgcggcgccttctcctcgtaccgcttcacgtcgtc 767 Query: 363 gtgccgcccgttgagtaaagcctctctg-agccaggcgtcgaactccgctgcccactccg 421 ||||| |||| ||| | ||||| ||| ||||| ||||||||||||| ||||||| || Sbjct: 766 gtgcctcccgccgagcagcgcctc-ctgcagccacccgtcgaactccgccgcccactgcg 708 Query: 422 gcac 425 |||| Sbjct: 707 gcac 704
>dbj|AK070251.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023041E09, full insert sequence Length = 1250 Score = 167 bits (84), Expect = 4e-38 Identities = 206/244 (84%), Gaps = 2/244 (0%) Strand = Plus / Minus Query: 183 ggtggtgaaccggtaggacgcgtaggaaagcgtggcgttggaccagctgcggtggatgag 242 ||||||||| ||||| || |||||||| |||| ||||||| ||||||||||||||| || Sbjct: 989 ggtggtgaagcggtacgaggcgtaggagagcgaggcgttgctccagctgcggtggatcag 930 Query: 243 ctccgccttggcgtccggcccggccgcgccgagcgcgacgtgcagcgggtacaagtggtc 302 |||||||||||| || ||||| |||||||||||||||||||||||| |||||||| Sbjct: 929 ctccgccttggccccctcaccggcggcgccgagcgcgacgtgcagcgggaggaagtggtc 870 Query: 303 cggctgcgggtgcgccaccttggcgaacggcgccctctcctcgtaccgtttcacgtcgtc 362 ||| ||||||||||||| || || ||||||| ||||||||||||| ||||||||||| Sbjct: 869 aggcgacgggtgcgccaccctgccgtgcggcgccttctcctcgtaccgcttcacgtcgtc 810 Query: 363 gtgccgcccgttgagtaaagcctctctg-agccaggcgtcgaactccgctgcccactccg 421 ||||| |||| ||| | ||||| ||| ||||| ||||||||||||| ||||||| || Sbjct: 809 gtgcctcccgccgagcagcgcctc-ctgcagccacccgtcgaactccgccgcccactgcg 751 Query: 422 gcac 425 |||| Sbjct: 750 gcac 747
>ref|NM_190142.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 843 Score = 165 bits (83), Expect = 2e-37 Identities = 164/191 (85%) Strand = Plus / Minus Query: 182 tggtggtgaaccggtaggacgcgtaggaaagcgtggcgttggaccagctgcggtggatga 241 |||||||||| ||||| ||||||| ||| ||||| |||||| ||||||| ||||||| | Sbjct: 805 tggtggtgaagcggtacgacgcgtgggagagcgtcgcgttgtaccagctatggtggatca 746 Query: 242 gctccgccttggcgtccggcccggccgcgccgagcgcgacgtgcagcgggtacaagtggt 301 ||||||||||||| ||| |||||| |||||||||||||||||||||||| ||||||| Sbjct: 745 gctccgccttggcatcctccccggcggcgccgagcgcgacgtgcagcgggaggaagtggt 686 Query: 302 ccggctgcgggtgcgccaccttggcgaacggcgccctctcctcgtaccgtttcacgtcgt 361 ||||| ||||||||||| ||| || ||||||| ||||||||||| | |||||||||| Sbjct: 685 ccggcgacgggtgcgccatcttaccgttcggcgccttctcctcgtactgcttcacgtcgt 626 Query: 362 cgtgccgcccg 372 |||||| |||| Sbjct: 625 cgtgcctcccg 615
>dbj|AK104545.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-305-C02, full insert sequence Length = 1204 Score = 165 bits (83), Expect = 2e-37 Identities = 164/191 (85%) Strand = Plus / Minus Query: 182 tggtggtgaaccggtaggacgcgtaggaaagcgtggcgttggaccagctgcggtggatga 241 |||||||||| ||||| ||||||| ||| ||||| |||||| ||||||| ||||||| | Sbjct: 965 tggtggtgaagcggtacgacgcgtgggagagcgtcgcgttgtaccagctatggtggatca 906 Query: 242 gctccgccttggcgtccggcccggccgcgccgagcgcgacgtgcagcgggtacaagtggt 301 ||||||||||||| ||| |||||| |||||||||||||||||||||||| ||||||| Sbjct: 905 gctccgccttggcatcctccccggcggcgccgagcgcgacgtgcagcgggaggaagtggt 846 Query: 302 ccggctgcgggtgcgccaccttggcgaacggcgccctctcctcgtaccgtttcacgtcgt 361 ||||| ||||||||||| ||| || ||||||| ||||||||||| | |||||||||| Sbjct: 845 ccggcgacgggtgcgccatcttaccgttcggcgccttctcctcgtactgcttcacgtcgt 786 Query: 362 cgtgccgcccg 372 |||||| |||| Sbjct: 785 cgtgcctcccg 775
>dbj|AK104652.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-C01, full insert sequence Length = 1213 Score = 165 bits (83), Expect = 2e-37 Identities = 164/191 (85%) Strand = Plus / Minus Query: 182 tggtggtgaaccggtaggacgcgtaggaaagcgtggcgttggaccagctgcggtggatga 241 |||||||||| ||||| ||||||| ||| ||||| |||||| ||||||| ||||||| | Sbjct: 966 tggtggtgaagcggtacgacgcgtgggagagcgtcgcgttgtaccagctatggtggatca 907 Query: 242 gctccgccttggcgtccggcccggccgcgccgagcgcgacgtgcagcgggtacaagtggt 301 ||||||||||||| ||| |||||| |||||||||||||||||||||||| ||||||| Sbjct: 906 gctccgccttggcatcctccccggcggcgccgagcgcgacgtgcagcgggaggaagtggt 847 Query: 302 ccggctgcgggtgcgccaccttggcgaacggcgccctctcctcgtaccgtttcacgtcgt 361 ||||| ||||||||||| ||| || ||||||| ||||||||||| | |||||||||| Sbjct: 846 ccggcgacgggtgcgccatcttaccgttcggcgccttctcctcgtactgcttcacgtcgt 787 Query: 362 cgtgccgcccg 372 |||||| |||| Sbjct: 786 cgtgcctcccg 776
>dbj|AK104601.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-G05, full insert sequence Length = 1205 Score = 165 bits (83), Expect = 2e-37 Identities = 164/191 (85%) Strand = Plus / Minus Query: 182 tggtggtgaaccggtaggacgcgtaggaaagcgtggcgttggaccagctgcggtggatga 241 |||||||||| ||||| ||||||| ||| ||||| |||||| ||||||| ||||||| | Sbjct: 966 tggtggtgaagcggtacgacgcgtgggagagcgtcgcgttgtaccagctatggtggatca 907 Query: 242 gctccgccttggcgtccggcccggccgcgccgagcgcgacgtgcagcgggtacaagtggt 301 ||||||||||||| ||| |||||| |||||||||||||||||||||||| ||||||| Sbjct: 906 gctccgccttggcatcctccccggcggcgccgagcgcgacgtgcagcgggaggaagtggt 847 Query: 302 ccggctgcgggtgcgccaccttggcgaacggcgccctctcctcgtaccgtttcacgtcgt 361 ||||| ||||||||||| ||| || ||||||| ||||||||||| | |||||||||| Sbjct: 846 ccggcgacgggtgcgccatcttaccgttcggcgccttctcctcgtactgcttcacgtcgt 787 Query: 362 cgtgccgcccg 372 |||||| |||| Sbjct: 786 cgtgcctcccg 776
>dbj|AK104462.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-C01, full insert sequence Length = 1204 Score = 165 bits (83), Expect = 2e-37 Identities = 164/191 (85%) Strand = Plus / Minus Query: 182 tggtggtgaaccggtaggacgcgtaggaaagcgtggcgttggaccagctgcggtggatga 241 |||||||||| ||||| ||||||| ||| ||||| |||||| ||||||| ||||||| | Sbjct: 965 tggtggtgaagcggtacgacgcgtgggagagcgtcgcgttgtaccagctatggtggatca 906 Query: 242 gctccgccttggcgtccggcccggccgcgccgagcgcgacgtgcagcgggtacaagtggt 301 ||||||||||||| ||| |||||| |||||||||||||||||||||||| ||||||| Sbjct: 905 gctccgccttggcatcctccccggcggcgccgagcgcgacgtgcagcgggaggaagtggt 846 Query: 302 ccggctgcgggtgcgccaccttggcgaacggcgccctctcctcgtaccgtttcacgtcgt 361 ||||| ||||||||||| ||| || ||||||| ||||||||||| | |||||||||| Sbjct: 845 ccggcgacgggtgcgccatcttaccgttcggcgccttctcctcgtactgcttcacgtcgt 786 Query: 362 cgtgccgcccg 372 |||||| |||| Sbjct: 785 cgtgcctcccg 775
>dbj|AK104432.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-208-A08, full insert sequence Length = 1204 Score = 165 bits (83), Expect = 2e-37 Identities = 164/191 (85%) Strand = Plus / Minus Query: 182 tggtggtgaaccggtaggacgcgtaggaaagcgtggcgttggaccagctgcggtggatga 241 |||||||||| ||||| ||||||| ||| ||||| |||||| ||||||| ||||||| | Sbjct: 965 tggtggtgaagcggtacgacgcgtgggagagcgtcgcgttgtaccagctatggtggatca 906 Query: 242 gctccgccttggcgtccggcccggccgcgccgagcgcgacgtgcagcgggtacaagtggt 301 ||||||||||||| ||| |||||| |||||||||||||||||||||||| ||||||| Sbjct: 905 gctccgccttggcatcctccccggcggcgccgagcgcgacgtgcagcgggaggaagtggt 846 Query: 302 ccggctgcgggtgcgccaccttggcgaacggcgccctctcctcgtaccgtttcacgtcgt 361 ||||| ||||||||||| ||| || ||||||| ||||||||||| | |||||||||| Sbjct: 845 ccggcgacgggtgcgccatcttaccgttcggcgccttctcctcgtactgcttcacgtcgt 786 Query: 362 cgtgccgcccg 372 |||||| |||| Sbjct: 785 cgtgcctcccg 775
>dbj|AK060927.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-201-A03, full insert sequence Length = 1212 Score = 165 bits (83), Expect = 2e-37 Identities = 164/191 (85%) Strand = Plus / Minus Query: 182 tggtggtgaaccggtaggacgcgtaggaaagcgtggcgttggaccagctgcggtggatga 241 |||||||||| ||||| ||||||| ||| ||||| |||||| ||||||| ||||||| | Sbjct: 965 tggtggtgaagcggtacgacgcgtgggagagcgtcgcgttgtaccagctatggtggatca 906 Query: 242 gctccgccttggcgtccggcccggccgcgccgagcgcgacgtgcagcgggtacaagtggt 301 ||||||||||||| ||| |||||| |||||||||||||||||||||||| ||||||| Sbjct: 905 gctccgccttggcatcctccccggcggcgccgagcgcgacgtgcagcgggaggaagtggt 846 Query: 302 ccggctgcgggtgcgccaccttggcgaacggcgccctctcctcgtaccgtttcacgtcgt 361 ||||| ||||||||||| ||| || ||||||| ||||||||||| | |||||||||| Sbjct: 845 ccggcgacgggtgcgccatcttaccgttcggcgccttctcctcgtactgcttcacgtcgt 786 Query: 362 cgtgccgcccg 372 |||||| |||| Sbjct: 785 cgtgcctcccg 775
>gb|BT018584.1| Zea mays clone EL01N0446E12.d mRNA sequence Length = 983 Score = 155 bits (78), Expect = 2e-34 Identities = 207/250 (82%) Strand = Plus / Minus Query: 180 cttggtggtgaaccggtaggacgcgtaggaaagcgtggcgttggaccagctgcggtggat 239 |||||||||||||| ||||||||||||||| ||||||||||||| ||||| ||||||| Sbjct: 721 cttggtggtgaacctgtaggacgcgtaggagagcgtggcgttggtccagcactggtggat 662 Query: 240 gagctccgccttggcgtccggcccggccgcgccgagcgcgacgtgcagcgggtacaagtg 299 |||||||||| ||| | |||||| |||||||||||||||||||||||||| ||||| Sbjct: 661 ctgctccgcctttgcgccgtccccggcggcgccgagcgcgacgtgcagcgggtagaagtg 602 Query: 300 gtccggctgcgggtgcgccaccttggcgaacggcgccctctcctcgtaccgtttcacgtc 359 ||||||| ||||||||||||| | | |||||| |||||||| |||| |||||||| Sbjct: 601 gtccggccacgggtgcgccaccataccatgcggcgctttctcctcgaaccggttcacgtc 542 Query: 360 gtcgtgccgcccgttgagtaaagcctctctgagccaggcgtcgaactccgctgcccactc 419 | || || |||| ||| | | || ||||||||||||||||||| || ||||||| Sbjct: 541 ctggtaccttccgtcgaggagcgagtccttgagccaggcgtcgaactcggcggcccactg 482 Query: 420 cggcacgggc 429 |||||||||| Sbjct: 481 cggcacgggc 472
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 261 cccggccgcgccgagcgcgacgt 283 ||||||||||||||||||||||| Sbjct: 2288467 cccggccgcgccgagcgcgacgt 2288489
>dbj|AK075223.1| Homo sapiens cDNA FLJ90742 fis, clone PLACE1011181, weakly similar to MSP1 PROTEIN HOMOLOG Length = 3034 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 246 cgccttggcgtccggcccggcc 267 |||||||||||||||||||||| Sbjct: 193 cgccttggcgtccggcccggcc 214
>gb|AC022016.7| Homo sapiens chromosome 10 clone RP11-165M8, complete sequence Length = 163031 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 246 cgccttggcgtccggcccggcc 267 |||||||||||||||||||||| Sbjct: 35790 cgccttggcgtccggcccggcc 35769
>ref|NM_032810.2| Homo sapiens ATPase family, AAA domain containing 1 (ATAD1), mRNA Length = 3034 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 246 cgccttggcgtccggcccggcc 267 |||||||||||||||||||||| Sbjct: 193 cgccttggcgtccggcccggcc 214
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 258 cggcccggccgcgccgagcgcg 279 |||||||||||||||||||||| Sbjct: 262046 cggcccggccgcgccgagcgcg 262025
>gb|AY659073.1| Synthetic construct Peudomonas aeruginosa clone FLH037952.01F PA5215 gene, partial cds Length = 1083 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 268 gcgccgagcgcgacgtgcagc 288 ||||||||||||||||||||| Sbjct: 47 gcgccgagcgcgacgtgcagc 27
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 268 gcgccgagcgcgacgtgcagc 288 ||||||||||||||||||||| Sbjct: 150971 gcgccgagcgcgacgtgcagc 150951
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 257 ccggcccggccgcgccgagcgcgac 281 |||||||||||||| |||||||||| Sbjct: 1338167 ccggcccggccgcgacgagcgcgac 1338191
>gb|AE004934.1| Pseudomonas aeruginosa PAO1, section 495 of 529 of the complete genome Length = 12908 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 268 gcgccgagcgcgacgtgcagc 288 ||||||||||||||||||||| Sbjct: 8966 gcgccgagcgcgacgtgcagc 8986
>gb|AF079900.1|AF079900 Streptomyces rimosus tetracycline efflux protein (otrB) gene, complete cds Length = 1947 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 260 gcccggccgcgccgagcgcga 280 ||||||||||||||||||||| Sbjct: 817 gcccggccgcgccgagcgcga 797
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 257 ccggcccggccgcgccgagcgcgac 281 |||||||||||||| |||||||||| Sbjct: 1664941 ccggcccggccgcgacgagcgcgac 1664965 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 253 gcgtccggcccggccgcgccg 273 ||||||||||||||||||||| Sbjct: 1271115 gcgtccggcccggccgcgccg 1271095 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 260 gcccggccgcgccgagcgcgacgt 283 ||||| |||||||||||||||||| Sbjct: 2145161 gcccgcccgcgccgagcgcgacgt 2145184
>gb|AF061335.1|AF061335 Streptomyces rimosus oxytetracycline exporter (otrB) gene, complete cds Length = 1611 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 260 gcccggccgcgccgagcgcga 280 ||||||||||||||||||||| Sbjct: 697 gcccggccgcgccgagcgcga 677
>gb|M20370.1|STMTETA S.rimosus tetracycline-resistance determinant (tet347) gene, complete cds Length = 2052 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 260 gcccggccgcgccgagcgcga 280 ||||||||||||||||||||| Sbjct: 924 gcccggccgcgccgagcgcga 904
>gb|AE017348.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 8, complete sequence Length = 1194300 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 270 gccgagcgcgacgtgcagcg 289 |||||||||||||||||||| Sbjct: 1165942 gccgagcgcgacgtgcagcg 1165961
>ref|XM_572203.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein (CNH00090) partial mRNA Length = 5123 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 270 gccgagcgcgacgtgcagcg 289 |||||||||||||||||||| Sbjct: 1341 gccgagcgcgacgtgcagcg 1322
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 248 ccttggcgtccggcccggccgcgc 271 |||||||||||||| ||||||||| Sbjct: 903998 ccttggcgtccggcacggccgcgc 903975
>gb|AC095787.7| Rattus norvegicus 14 BAC CH230-9M3 (Children's Hospital Oakland Research Institute) complete sequence Length = 242500 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 ttttccatgaactccgtcac 45 |||||||||||||||||||| Sbjct: 227495 ttttccatgaactccgtcac 227476
>emb|BX640440.1| Bordetella bronchiseptica strain RB50, complete genome; segment 4/16 Length = 349497 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 419 ccggcacgggctcgccgctg 438 |||||||||||||||||||| Sbjct: 220602 ccggcacgggctcgccgctg 220583
>emb|BX640425.1| Bordetella parapertussis strain 12822, complete genome; segment 3/14 Length = 348257 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 419 ccggcacgggctcgccgctg 438 |||||||||||||||||||| Sbjct: 341272 ccggcacgggctcgccgctg 341253
>emb|BX640419.1| Bordetella pertussis strain Tohama I, complete genome; segment 9/12 Length = 349672 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 419 ccggcacgggctcgccgctg 438 |||||||||||||||||||| Sbjct: 257201 ccggcacgggctcgccgctg 257220
>gb|AC011031.12| Homo sapiens chromosome 8, clone RP11-345I19, complete sequence Length = 183771 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 19 ggttttcttttccatgaact 38 |||||||||||||||||||| Sbjct: 68243 ggttttcttttccatgaact 68262
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 260 gcccggccgcgccgagcgcg 279 |||||||||||||||||||| Sbjct: 5250696 gcccggccgcgccgagcgcg 5250677
>gb|AC155236.2| Mus musculus BAC clone RP24-427K17 from chromosome 12, complete sequence Length = 126917 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 aaaacatggttttcttttcc 31 |||||||||||||||||||| Sbjct: 85703 aaaacatggttttcttttcc 85722
>gb|AF546152.1| Streptomyces sp. 100/Eco52 UnbL (unbL), UnbV (unbV), UnbU (unbU), PskE (pksE), and TebC (tebC) genes, complete cds Length = 10352 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 254 cgtccggcccggccgcgccg 273 |||||||||||||||||||| Sbjct: 884 cgtccggcccggccgcgccg 903
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 262 ccggccgcgccgagcgcgac 281 |||||||||||||||||||| Sbjct: 281390 ccggccgcgccgagcgcgac 281409
>dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete genome Length = 3544776 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 248 ccttggcgtccggcccggccgcgc 271 ||||||||||| |||||||||||| Sbjct: 3195060 ccttggcgtcctgcccggccgcgc 3195037
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 263 cggccgcgccgagcgcgacg 282 |||||||||||||||||||| Sbjct: 3020564 cggccgcgccgagcgcgacg 3020583 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 419 ccggcacgggctcgccgctggtgggcgc 446 |||||||||||||| ||||| ||||||| Sbjct: 2354954 ccggcacgggctcggcgctgatgggcgc 2354927
>gb|BC095847.1| Rattus norvegicus TXK tyrosine kinase, mRNA (cDNA clone MGC:112756 IMAGE:7388955), complete cds Length = 2308 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 ttttccatgaactccgtcac 45 |||||||||||||||||||| Sbjct: 1206 ttttccatgaactccgtcac 1187
>ref|NM_001024255.1| Rattus norvegicus TXK tyrosine kinase (Txk), mRNA Length = 2308 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 ttttccatgaactccgtcac 45 |||||||||||||||||||| Sbjct: 1206 ttttccatgaactccgtcac 1187
>emb|Y15228.1|HSY15228 Homo sapiens mRNA for leukemia associated gene 2 Length = 1750 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 313 tgcgccaccttggcgaacggcgcc 336 ||||||||||||||||||| |||| Sbjct: 152 tgcgccaccttggcgaacgccgcc 129 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,945,677 Number of Sequences: 3902068 Number of extensions: 2945677 Number of successful extensions: 67707 Number of sequences better than 10.0: 47 Number of HSP's better than 10.0 without gapping: 47 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 65992 Number of HSP's gapped (non-prelim): 1707 length of query: 459 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 437 effective length of database: 17,147,199,772 effective search space: 7493326300364 effective search space used: 7493326300364 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
