>RETO_ESCCA (P30986) Reticuline oxidase precursor (EC 1.21.3.3)|
           (Berberine-bridge-forming enzyme) (BBE)
           (Tetrahydroprotoberberine synthase)
          Length = 538

 Score = 50.8 bits (120), Expect = 8e-07
 Identities = 21/37 (56%), Positives = 26/37 (70%)
 Frame = -2

Query: 311 WGQKYFKGNYQRLAMAKAQIDPDDYFRNEQSIPPFAN 201
           WG+ YF  NY+RL  AK  IDP++ F + QSIPP AN
Sbjct: 485 WGESYFLSNYERLIRAKTLIDPNNVFNHPQSIPPMAN 521

>RETO_PAPSO (P93479) Reticuline oxidase precursor (EC 1.21.3.3)|
           (Berberine-bridge-forming enzyme) (BBE)
           (Tetrahydroprotoberberine synthase)
          Length = 535

 Score = 48.9 bits (115), Expect = 3e-06
 Identities = 19/34 (55%), Positives = 25/34 (73%)
 Frame = -2

Query: 311 WGQKYFKGNYQRLAMAKAQIDPDDYFRNEQSIPP 210
           WG++YF  NY+RL  AK  IDP++ F + QSIPP
Sbjct: 489 WGERYFSSNYERLVKAKTLIDPNNVFNHPQSIPP 522

>MCRA_STRLA (P43485) Mitomycin radical oxidase (EC 1.5.3.-)|
          Length = 447

 Score = 31.6 bits (70), Expect = 0.51
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -2

Query: 299 YFKGNYQRLAMAKAQIDPDDYFRNEQSIPP 210
           Y   ++ RL   KAQ DPD+ FR   +IPP
Sbjct: 413 YTPADFARLRAVKAQYDPDNMFRVNFNIPP 442

>MOTD_RHIME (Q52964) Chemotaxis protein motD (Motility protein D)|
          Length = 475

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 315 GLGPEVLQG*LPEAGDGQGPDRPRRLLQ 232
           G+ P+V  G  P+ GDG G   P RL +
Sbjct: 220 GISPDVADGAHPQTGDGTGGSEPDRLFR 247

>RNH2_PSE14 (Q48F73) Ribonuclease HII (EC 3.1.26.4) (RNase HII)|
          Length = 222

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +3

Query: 186 VRSPAIGKWRDALLVPEVVVGVD-LGLGHRQPLVVTLEVLLAPDHPGLEAAD 338
           +RSP +    D  LV ++V GVD +G G     VVT  V+L P  P L   D
Sbjct: 1   MRSPIMQTGLDFTLVEDLVAGVDEVGRGPLCGAVVTAAVILDPARPILGLND 52

>ACM3_CHICK (P49578) Muscarinic acetylcholine receptor M3|
          Length = 639

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = -3

Query: 97  CDCLPQ*LWNMCTCICILNKSI 32
           CDC+P+ +WN+   +C +N ++
Sbjct: 567 CDCVPKTVWNLGYWLCYINSTV 588

>XIST_MOUSE (P27571) X inactive-specific transcript protein (Fragment)|
          Length = 298

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 7/36 (19%)
 Frame = -1

Query: 177 GPLAL-------LCTW*LSYIFNFIGTCIC*CWFVI 91
           GPL+L       LC W +SY+   +  C+C C++++
Sbjct: 212 GPLSLFSFVFVSLCYWWISYLSIILLLCVCLCFYLL 247

>RBL2_RHOCA (P50922) Ribulose bisphosphate carboxylase (EC 4.1.1.39) (RuBisCO)|
          Length = 458

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 175 PILLFDHLLLANGGMLCSFLK*SSGS 252
           P+ LFD  ++  G MLCSFL  + G+
Sbjct: 86  PVELFDRNIIDGGAMLCSFLTLTIGN 111

>NFI_GLOVI (Q7NDJ2) Endonuclease V (EC 3.1.21.7) (Deoxyinosine 3'endonuclease)|
           (Deoxyribonuclease V) (DNase V)
          Length = 246

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 240 VVGVDLGLGHRQPLVVTLEVLLAPDHPGLEAAD 338
           V GVD+    R+P  +   V++   +PGLE  D
Sbjct: 46  VAGVDVSFNPREPKALVHAVVVVLSYPGLEVVD 78

>O16G_BACCO (Q45101) Oligo-1,6-glucosidase (EC 3.2.1.10) (Oligosaccharide|
           alpha-1,6-glucosidase) (Sucrase-isomaltase) (Isomaltase)
           (Dextrin 6-alpha-D-glucanohydrolase)
          Length = 555

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = -2

Query: 332 SFQAGMVWGQKYFKGN--YQRLAMAKAQIDPDDYFRNEQSI 216
           SF AG   G  + K N  Y  + +AKA  +PD  F   QS+
Sbjct: 430 SFNAGFTTGTPWLKVNSRYSEINVAKALQEPDSIFYYYQSL 470

>KUP1_RHIME (Q92RN0) Probable potassium transport system protein kup 1|
          Length = 622

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -2

Query: 338 VSSFQAGMV-WGQKYFKGNYQRLAMAKAQIDPDDYFR 231
           V   Q+GM  W  + F      +A+A A IDP DYFR
Sbjct: 577 VPDAQSGMPHWQDRLF------IALANAAIDPSDYFR 607

>HDNO_ARTOX (P08159) 6-hydroxy-D-nicotine oxidase (EC 1.5.3.6) (6-HDNO)|
          Length = 458

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = -2

Query: 341 NVSSFQAGMVWGQKYFKGNYQRLAMAKAQIDPDDYFRNEQSIPP 210
           N S   A MV  + Y    Y RLA  K + DP++ FR+  +I P
Sbjct: 413 NNSEVTAEMV-AEVYKPEVYCRLAAVKREYDPENRFRHNYNIDP 455


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,335,006
Number of Sequences: 219361
Number of extensions: 890965
Number of successful extensions: 1808
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1806
length of database: 80,573,946
effective HSP length: 90
effective length of database: 60,831,456
effective search space used: 1459954944
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)