Clone Name | rbart07h06 |
---|---|
Clone Library Name | barley_pub |
>gb|BT009387.1| Triticum aestivum clone wlm96.pk035.d7:fis, full insert mRNA sequence Length = 1805 Score = 319 bits (161), Expect = 3e-84 Identities = 195/206 (94%), Gaps = 4/206 (1%) Strand = Plus / Minus Query: 144 ttagctaccatgtacacaaaaga----gctagcggcccattttgctgttcgatcacctgc 199 ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| Sbjct: 1660 ttagctaccatgtacacaaaagaaagagctagcggcccattttgctgatcgatcacctgc 1601 Query: 200 tattggcaaatggcgggatgctctgctcgttcctgaagtagtcgtcggggtcgatctggg 259 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1600 tgttggcaaatggcgggatgctctgctcgttcctgaagtagtcgtcggggtcgatctggc 1541 Query: 260 ccttggccatcgccagcctctggtagttacccttgaagtacttctggccccagaccatcc 319 ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 1540 ccttggccatcgcgagcctctggtagttgcccttgaagtacttctggccccagaccatcc 1481 Query: 320 cggcctggaagctgctgacgttgccg 345 |||||||| ||||||| ||||||||| Sbjct: 1480 cggcctggtagctgctcacgttgccg 1455 Score = 77.8 bits (39), Expect = 2e-11 Identities = 57/63 (90%) Strand = Plus / Minus Query: 79 attgtggtaagcaatcacaaaccagcatcaacaaatacatgtaccaataaagttaaatat 138 |||||||||||||||| ||||||| |||||||||||||||||| ||||||| ||||| | Sbjct: 1740 attgtggtaagcaatctcaaaccaatatcaacaaatacatgtacaaataaagataaatgt 1681 Query: 139 gta 141 ||| Sbjct: 1680 gta 1678
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 139 bits (70), Expect = 7e-30 Identities = 115/130 (88%) Strand = Plus / Plus Query: 210 tggcgggatgctctgctcgttcctgaagtagtcgtcggggtcgatctgggccttggccat 269 |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| Sbjct: 20485045 tggcgggatgctctgctcgttcctgaagtagtcgtcggcgtcgatctgcgccttggccat 20485104 Query: 270 cgccagcctctggtagttacccttgaagtacttctggccccagaccatcccggcctggaa 329 || |||| ||||||||| ||| |||||||||||| ||||| ||| | ||||| | | | Sbjct: 20485105 ggcgagccgctggtagttccccctgaagtacttctccccccacaccttgccggcgtcgta 20485164 Query: 330 gctgctgacg 339 |||||||||| Sbjct: 20485165 gctgctgacg 20485174 Score = 75.8 bits (38), Expect = 8e-11 Identities = 38/38 (100%) Strand = Plus / Plus Query: 206 caaatggcgggatgctctgctcgttcctgaagtagtcg 243 |||||||||||||||||||||||||||||||||||||| Sbjct: 20436758 caaatggcgggatgctctgctcgttcctgaagtagtcg 20436795 Score = 63.9 bits (32), Expect = 3e-07 Identities = 86/104 (82%) Strand = Plus / Plus Query: 208 aatggcgggatgctctgctcgttcctgaagtagtcgtcggggtcgatctgggccttggcc 267 ||||| || ||||||||||||||||||||| ||||| ||| || | || |||||| | | Sbjct: 20420267 aatggaggaatgctctgctcgttcctgaagaagtcggtgggatccaccttggccttcgtc 20420326 Query: 268 atcgccagcctctggtagttacccttgaagtacttctggcccca 311 | || ||||||| | |||| |||||||||||||||| |||||| Sbjct: 20420327 ctggcgagcctctcgaagttgcccttgaagtacttctcgcccca 20420370 Score = 58.0 bits (29), Expect = 2e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 211 ggcgggatgctctgctcgttcctgaagtagtcg 243 |||||||||||||||||||||| |||||||||| Sbjct: 20460574 ggcgggatgctctgctcgttccggaagtagtcg 20460606 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 217 atgctctgctcgttcctgaagtagt 241 ||||||||||||||| ||||||||| Sbjct: 20403507 atgctctgctcgttcttgaagtagt 20403531
>dbj|AP003686.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0659D09 Length = 168253 Score = 139 bits (70), Expect = 7e-30 Identities = 115/130 (88%) Strand = Plus / Plus Query: 210 tggcgggatgctctgctcgttcctgaagtagtcgtcggggtcgatctgggccttggccat 269 |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| Sbjct: 57340 tggcgggatgctctgctcgttcctgaagtagtcgtcggcgtcgatctgcgccttggccat 57399 Query: 270 cgccagcctctggtagttacccttgaagtacttctggccccagaccatcccggcctggaa 329 || |||| ||||||||| ||| |||||||||||| ||||| ||| | ||||| | | | Sbjct: 57400 ggcgagccgctggtagttccccctgaagtacttctccccccacaccttgccggcgtcgta 57459 Query: 330 gctgctgacg 339 |||||||||| Sbjct: 57460 gctgctgacg 57469 Score = 75.8 bits (38), Expect = 8e-11 Identities = 38/38 (100%) Strand = Plus / Plus Query: 206 caaatggcgggatgctctgctcgttcctgaagtagtcg 243 |||||||||||||||||||||||||||||||||||||| Sbjct: 9053 caaatggcgggatgctctgctcgttcctgaagtagtcg 9090 Score = 58.0 bits (29), Expect = 2e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 211 ggcgggatgctctgctcgttcctgaagtagtcg 243 |||||||||||||||||||||| |||||||||| Sbjct: 32869 ggcgggatgctctgctcgttccggaagtagtcg 32901
>dbj|AK109673.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-145-B05, full insert sequence Length = 1972 Score = 139 bits (70), Expect = 7e-30 Identities = 115/130 (88%) Strand = Plus / Minus Query: 210 tggcgggatgctctgctcgttcctgaagtagtcgtcggggtcgatctgggccttggccat 269 |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| Sbjct: 1627 tggcgggatgctctgctcgttcctgaagtagtcgtcggcgtcgatctgcgccttggccat 1568 Query: 270 cgccagcctctggtagttacccttgaagtacttctggccccagaccatcccggcctggaa 329 || |||| ||||||||| ||| |||||||||||| ||||| ||| | ||||| | | | Sbjct: 1567 ggcgagccgctggtagttccccctgaagtacttctccccccacaccttgccggcgtcgta 1508 Query: 330 gctgctgacg 339 |||||||||| Sbjct: 1507 gctgctgacg 1498
>gb|AY451241.1| Cynodon dactylon FAD-linked oxidoreductase BG60 mRNA, complete cds Length = 1569 Score = 97.6 bits (49), Expect = 2e-17 Identities = 85/97 (87%) Strand = Plus / Minus Query: 208 aatggcgggatgctctgctcgttcctgaagtagtcgtcggggtcgatctgggccttggcc 267 |||||||||||||||||||| |||||||||||||| ||||||||||||| |||||| | Sbjct: 1562 aatggcgggatgctctgctcattcctgaagtagtcttcggggtcgatcttacccttggtc 1503 Query: 268 atcgccagcctctggtagttacccttgaagtacttct 304 | || ||||||| | |||| |||||||||||||||| Sbjct: 1502 ctggcgagcctctcgaagttgcccttgaagtacttct 1466
>emb|AJ512488.2|PPR512488 Phleum pratense partial phlp4 gene for pollen allergen Phl p 4, allele B1 Length = 1580 Score = 89.7 bits (45), Expect = 6e-15 Identities = 90/105 (85%) Strand = Plus / Minus Query: 211 ggcgggatgctctgctcgttcctgaagtagtcgtcggggtcgatctgggccttggccatc 270 ||||||||||||||||||||||||||||||||| || |||| || | |||||| || Sbjct: 1508 ggcgggatgctctgctcgttcctgaagtagtcggtaggatcgaccttgcccttggtaatg 1449 Query: 271 gccagcctctggtagttacccttgaagtacttctggccccagacc 315 || ||||||| | |||| ||||||||||| ||||||||||||||| Sbjct: 1448 gcgagcctctcgaagttgcccttgaagtatttctggccccagacc 1404
>gb|DQ251188.1| Phleum pratense major pollen allergen Phl p 4 precursor, mRNA, complete cds Length = 1741 Score = 89.7 bits (45), Expect = 6e-15 Identities = 90/105 (85%) Strand = Plus / Minus Query: 211 ggcgggatgctctgctcgttcctgaagtagtcgtcggggtcgatctgggccttggccatc 270 ||||||||||||||||||||||||||||||||| || |||| || | |||||| || Sbjct: 1594 ggcgggatgctctgctcgttcctgaagtagtcggtaggatcgaccttgcccttggtaatg 1535 Query: 271 gccagcctctggtagttacccttgaagtacttctggccccagacc 315 || ||||||| | |||| ||||||||||| ||||||||||||||| Sbjct: 1534 gcgagcctctcgaagttgcccttgaagtatttctggccccagacc 1490
>gb|AY105422.1| Zea mays PCO091928 mRNA sequence Length = 664 Score = 87.7 bits (44), Expect = 2e-14 Identities = 92/108 (85%) Strand = Plus / Minus Query: 208 aatggcgggatgctctgctcgttcctgaagtagtcgtcggggtcgatctgggccttggcc 267 |||||||||||||||||||||||||||||||||||| |||||| | || |||||| | | Sbjct: 144 aatggcgggatgctctgctcgttcctgaagtagtcgcaggggtccaccttggccttagtc 85 Query: 268 atcgccagcctctggtagttacccttgaagtacttctggccccagacc 315 | || ||||||| | |||| || ||| ||||||||| |||||||||| Sbjct: 84 ctggcgagcctctcgaagttgccattgtagtacttctcgccccagacc 37
>emb|AJ512487.2|PPR512487 Phleum pratense partial phlp4 gene for pollen allergen Phl p 4, allele A1 Length = 1567 Score = 83.8 bits (42), Expect = 3e-13 Identities = 90/106 (84%) Strand = Plus / Minus Query: 211 ggcgggatgctctgctcgttcctgaagtagtcgtcggggtcgatctgggccttggccatc 270 ||||||||||||||||||||||||||||||||| ||| || | || | |||||| || Sbjct: 1508 ggcgggatgctctgctcgttcctgaagtagtcggtgggatccaccttgcccttggtgatg 1449 Query: 271 gccagcctctggtagttacccttgaagtacttctggccccagacca 316 || ||||||||| | || ||||||||||| ||||||||||| |||| Sbjct: 1448 gcgagcctctggaaattgcccttgaagtatttctggccccacacca 1403
>emb|AJ862834.1| Hordeum vulgare partial horv4 gene for pollen allergen Hor v 4 Length = 1608 Score = 81.8 bits (41), Expect = 1e-12 Identities = 86/101 (85%) Strand = Plus / Minus Query: 211 ggcgggatgctctgctcgttcctgaagtagtcgtcggggtcgatctgggccttggccatc 270 |||||||||||||||||||||||||||||||| | ||| || | || | |||||| || Sbjct: 1541 ggcgggatgctctgctcgttcctgaagtagtcctggggatccaccttgcccttggtgatg 1482 Query: 271 gccagcctctggtagttacccttgaagtacttctggcccca 311 || ||||| ||| |||| |||||||||||||||| |||||| Sbjct: 1481 gcgagcctttggaagttgcccttgaagtacttctcgcccca 1441
>emb|AJ862831.1| Secale cereale partial secc4 gene for pollen allergen Sec c 4, allele B Length = 1644 Score = 81.8 bits (41), Expect = 1e-12 Identities = 89/105 (84%) Strand = Plus / Minus Query: 211 ggcgggatgctctgctcgttcctgaagtagtcgtcggggtcgatctgggccttggccatc 270 |||||||||||||||||||||||||||||||| | || || | || | |||||| || Sbjct: 1547 ggcgggatgctctgctcgttcctgaagtagtcctgaggatccaccttgcccttggtaatg 1488 Query: 271 gccagcctctggtagttacccttgaagtacttctggccccagacc 315 || ||||| ||| |||| |||||||||||||||| |||||||||| Sbjct: 1487 gcgagcctttggaagttgcccttgaagtacttctcgccccagacc 1443
>emb|AJ862832.1| Triticum aestivum partial tria4 gene for pollen allergen Tri a 4, allele A Length = 1603 Score = 73.8 bits (37), Expect = 3e-10 Identities = 85/101 (84%) Strand = Plus / Minus Query: 211 ggcgggatgctctgctcgttcctgaagtagtcgtcggggtcgatctgggccttggccatc 270 |||||||||||||||||||||||||||||||| | || || | || | |||||| || Sbjct: 1538 ggcgggatgctctgctcgttcctgaagtagtcctgaggatccaccttgcccttggtaata 1479 Query: 271 gccagcctctggtagttacccttgaagtacttctggcccca 311 || ||||| ||| |||| |||||||||||||||| |||||| Sbjct: 1478 gcgagcctttggaagttgcccttgaagtacttctcgcccca 1438
>emb|AJ862830.1| Secale cereale partial secc4 gene for pollen allergen Sec c 4, allele A Length = 1603 Score = 69.9 bits (35), Expect = 5e-09 Identities = 80/95 (84%) Strand = Plus / Minus Query: 210 tggcgggatgctctgctcgttcctgaagtagtcgtcggggtcgatctgggccttggccat 269 ||||||||||||||||||||||||||||||||| | || || | || | |||||| || Sbjct: 1539 tggcgggatgctctgctcgttcctgaagtagtcctgaggatccaccttgcccttggtaat 1480 Query: 270 cgccagcctctggtagttacccttgaagtacttct 304 || ||||| ||| |||| |||||||||||||||| Sbjct: 1479 ggcgagcctttggaagttgcccttgaagtacttct 1445
>dbj|AP004731.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0016D02 Length = 157822 Score = 63.9 bits (32), Expect = 3e-07 Identities = 86/104 (82%) Strand = Plus / Plus Query: 208 aatggcgggatgctctgctcgttcctgaagtagtcgtcggggtcgatctgggccttggcc 267 ||||| || ||||||||||||||||||||| ||||| ||| || | || |||||| | | Sbjct: 143662 aatggaggaatgctctgctcgttcctgaagaagtcggtgggatccaccttggccttcgtc 143721 Query: 268 atcgccagcctctggtagttacccttgaagtacttctggcccca 311 | || ||||||| | |||| |||||||||||||||| |||||| Sbjct: 143722 ctggcgagcctctcgaagttgcccttgaagtacttctcgcccca 143765 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 217 atgctctgctcgttcctgaagtagt 241 ||||||||||||||| ||||||||| Sbjct: 126902 atgctctgctcgttcttgaagtagt 126926
>dbj|AK072611.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023133A01, full insert sequence Length = 2030 Score = 63.9 bits (32), Expect = 3e-07 Identities = 86/104 (82%) Strand = Plus / Minus Query: 208 aatggcgggatgctctgctcgttcctgaagtagtcgtcggggtcgatctgggccttggcc 267 ||||| || ||||||||||||||||||||| ||||| ||| || | || |||||| | | Sbjct: 1599 aatggaggaatgctctgctcgttcctgaagaagtcggtgggatccaccttggccttcgtc 1540 Query: 268 atcgccagcctctggtagttacccttgaagtacttctggcccca 311 | || ||||||| | |||| |||||||||||||||| |||||| Sbjct: 1539 ctggcgagcctctcgaagttgcccttgaagtacttctcgcccca 1496
>dbj|AK073505.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046H14, full insert sequence Length = 1813 Score = 58.0 bits (29), Expect = 2e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 211 ggcgggatgctctgctcgttcctgaagtagtcg 243 |||||||||||||||||||||| |||||||||| Sbjct: 1613 ggcgggatgctctgctcgttccggaagtagtcg 1581
>gb|AC133608.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0085G12, complete sequence Length = 121470 Score = 54.0 bits (27), Expect = 3e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 210 tggcgggatgctctgctcgttcctgaagtagtcgtcggg 248 ||||||||||||||||||||| | |||||||||| |||| Sbjct: 73145 tggcgggatgctctgctcgttgcggaagtagtcgccggg 73183
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 54.0 bits (27), Expect = 3e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 210 tggcgggatgctctgctcgttcctgaagtagtcgtcggg 248 ||||||||||||||||||||| | |||||||||| |||| Sbjct: 17005538 tggcgggatgctctgctcgttgcggaagtagtcgccggg 17005576
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 54.0 bits (27), Expect = 3e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 210 tggcgggatgctctgctcgttcctgaagtagtcgtcggg 248 ||||||||||||||||||||| | |||||||||| |||| Sbjct: 17100190 tggcgggatgctctgctcgttgcggaagtagtcgccggg 17100228
>emb|AJ862833.1| Triticum aestivum partial tria4 gene for pollen allergen Tri a 4, allele B Length = 1603 Score = 50.1 bits (25), Expect = 0.005 Identities = 82/101 (81%) Strand = Plus / Minus Query: 211 ggcgggatgctctgctcgttcctgaagtagtcgtcggggtcgatctgggccttggccatc 270 ||||||||||| ||||| |||||||||||||| | || || | || | |||||| || Sbjct: 1538 ggcgggatgctttgctcattcctgaagtagtcctgaggatctaccttgcccttggtaatg 1479 Query: 271 gccagcctctggtagttacccttgaagtacttctggcccca 311 || ||||| ||| |||| | |||||||||||||| |||||| Sbjct: 1478 gcgagcctttggaagttgctcttgaagtacttctcgcccca 1438
>gb|BT009471.1| Triticum aestivum clone wr1.pk0028.b10:fis, full insert mRNA sequence Length = 588 Score = 50.1 bits (25), Expect = 0.005 Identities = 28/29 (96%) Strand = Plus / Minus Query: 214 gggatgctctgctcgttcctgaagtagtc 242 ||||||||||||||||| ||||||||||| Sbjct: 387 gggatgctctgctcgtttctgaagtagtc 359
>dbj|AP004897.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT01P23, TM0047a, complete sequence Length = 16512 Score = 46.1 bits (23), Expect = 0.074 Identities = 29/31 (93%) Strand = Plus / Minus Query: 284 agttacccttgaagtacttctggccccagac 314 |||| |||||||||||||||| ||||||||| Sbjct: 4817 agtttcccttgaagtacttcttgccccagac 4787
>gb|CP000079.1| Leishmania major strain Friedlin chromosome 27, complete sequence Length = 1130447 Score = 44.1 bits (22), Expect = 0.29 Identities = 25/26 (96%) Strand = Plus / Minus Query: 243 gtcggggtcgatctgggccttggcca 268 |||| ||||||||||||||||||||| Sbjct: 178232 gtcgcggtcgatctgggccttggcca 178207
>ref|XM_868508.1| PREDICTED: Bos taurus similar to heterogeneous nuclear ribonucleoprotein U (LOC616476), mRNA Length = 3125 Score = 44.1 bits (22), Expect = 0.29 Identities = 22/22 (100%) Strand = Plus / Minus Query: 295 aagtacttctggccccagacca 316 |||||||||||||||||||||| Sbjct: 1189 aagtacttctggccccagacca 1168
>gb|AC093536.4| Homo sapiens chromosome 16 clone RP11-744D14, complete sequence Length = 199655 Score = 44.1 bits (22), Expect = 0.29 Identities = 22/22 (100%) Strand = Plus / Minus Query: 50 acaaatacatgtacacatattc 71 |||||||||||||||||||||| Sbjct: 52913 acaaatacatgtacacatattc 52892
>ref|XM_842911.1| Leishmania major strain Friedlin cysteine peptidase, clan CA, family C2 (LMJ_0306) partial mRNA Length = 18495 Score = 44.1 bits (22), Expect = 0.29 Identities = 25/26 (96%) Strand = Plus / Minus Query: 243 gtcggggtcgatctgggccttggcca 268 |||| ||||||||||||||||||||| Sbjct: 13347 gtcgcggtcgatctgggccttggcca 13322
>emb|AJ862835.1| Lolium perenne partial lolp4 gene for pollen allergen Lol p 4 Length = 1272 Score = 44.1 bits (22), Expect = 0.29 Identities = 37/42 (88%) Strand = Plus / Minus Query: 274 agcctctggtagttacccttgaagtacttctggccccagacc 315 ||||||| | ||||||||||||| || ||||| ||||||||| Sbjct: 1221 agcctctcgaagttacccttgaaatatttctgtccccagacc 1180
>gb|AC139724.1| Homo sapiens BAC clone RP11-1H20 from 4, complete sequence Length = 155873 Score = 44.1 bits (22), Expect = 0.29 Identities = 22/22 (100%) Strand = Plus / Plus Query: 48 atacaaatacatgtacacatat 69 |||||||||||||||||||||| Sbjct: 43499 atacaaatacatgtacacatat 43520
>emb|BX072554.8| Zebrafish DNA sequence from clone DKEY-61M24 in linkage group 7, complete sequence Length = 190879 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 301 ttctggccccagaccatcccg 321 ||||||||||||||||||||| Sbjct: 132831 ttctggccccagaccatcccg 132811
>gb|AC154324.2| Mus musculus BAC clone RP24-494E12 from chromosome 14, complete sequence Length = 198197 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 48 atacaaatacatgtacacata 68 ||||||||||||||||||||| Sbjct: 86864 atacaaatacatgtacacata 86844
>gb|AC021558.10| Homo sapiens chromosome 8, clone RP11-746L20, complete sequence Length = 171582 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 50 acaaatacatgtacacatatt 70 ||||||||||||||||||||| Sbjct: 41491 acaaatacatgtacacatatt 41471
>ref|XM_687263.1| PREDICTED: Danio rerio similar to predicted CDS, peptidase family A16 and RNA-directed DNA polymerase and Integrase, catalytic domain and Zn-finger, CCHC type (XC382) (LOC563900), mRNA Length = 10836 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 301 ttctggccccagaccatcccg 321 ||||||||||||||||||||| Sbjct: 8642 ttctggccccagaccatcccg 8662
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 289 cccttgaagtacttctggccccaga 313 |||| |||||||||||||||||||| Sbjct: 4035378 ccctcgaagtacttctggccccaga 4035354
>emb|BX323812.10| Zebrafish DNA sequence from clone CH211-150H8 in linkage group 2, complete sequence Length = 153556 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 301 ttctggccccagaccatcccg 321 ||||||||||||||||||||| Sbjct: 6242 ttctggccccagaccatcccg 6262
>dbj|AK105176.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-104-H12, full insert sequence Length = 1757 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 217 atgctctgctcgttcctgaagtagt 241 ||||||||||||||| ||||||||| Sbjct: 1629 atgctctgctcgttcttgaagtagt 1605
>gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, complete genome Length = 943016 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 216 gatgctctgctcgttcctga 235 |||||||||||||||||||| Sbjct: 328946 gatgctctgctcgttcctga 328965
>gb|AC114662.11| Mus musculus chromosome 1, clone RP24-170M24, complete sequence Length = 131587 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 ttagctaccatgtacacaaa 163 |||||||||||||||||||| Sbjct: 77235 ttagctaccatgtacacaaa 77254
>gb|AY973971.1| Leishmania major excreted/secreted protein 31 mRNA, complete cds Length = 3834 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 324 ctggaagctgctgacgttgc 343 |||||||||||||||||||| Sbjct: 3460 ctggaagctgctgacgttgc 3479
>gb|AC149299.1| Populus trichocarpa clone Pop1-037B22, complete sequence Length = 143392 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 214 gggatgctctgctcgttcctgaag 237 |||||||||||||| ||||||||| Sbjct: 72248 gggatgctctgctcattcctgaag 72225
>gb|AC108830.13| Mus musculus chromosome 8, clone RP23-232G11, complete sequence Length = 200841 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 49 tacaaatacatgtacacata 68 |||||||||||||||||||| Sbjct: 167036 tacaaatacatgtacacata 167017
>gb|AC123553.4| Mus musculus BAC clone RP24-566O21 from chromosome 3, complete sequence Length = 138553 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 50 acaaatacatgtacacatat 69 |||||||||||||||||||| Sbjct: 27375 acaaatacatgtacacatat 27356
>gb|AC128669.4| Mus musculus BAC clone RP24-115D21 from chromosome 17, complete sequence Length = 169571 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 50 acaaatacatgtacacatat 69 |||||||||||||||||||| Sbjct: 131641 acaaatacatgtacacatat 131660
>emb|AL512323.8| Human DNA sequence from clone RP13-445B20 on chromosome 6, complete sequence Length = 205043 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 50 acaaatacatgtacacatat 69 |||||||||||||||||||| Sbjct: 35244 acaaatacatgtacacatat 35225
>emb|AL157937.21| Human DNA sequence from clone RP11-408N14 on chromosome 9 Contains a novel gene, complete sequence Length = 153783 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 46 agatacaaatacatgtacacatat 69 ||||||| |||||||||||||||| Sbjct: 36625 agatacatatacatgtacacatat 36648
>emb|AJ584640.1| Bufo melanostictus partial mitochondrial genome Length = 16328 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 288 acccttgaagtacttctggc 307 |||||||||||||||||||| Sbjct: 4233 acccttgaagtacttctggc 4214
>gb|AC092819.2| Homo sapiens chromosome 8, clone RP11-716D16, complete sequence Length = 153310 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 126 taaagttaaatatgtaactt 145 |||||||||||||||||||| Sbjct: 36828 taaagttaaatatgtaactt 36809
>gb|AC020782.12| Homo sapiens chromosome 8, clone RP11-562L3, complete sequence Length = 104745 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 taaagttaaatatgtaactt 145 |||||||||||||||||||| Sbjct: 18401 taaagttaaatatgtaactt 18420
>gb|AC055710.10| Homo sapiens 3 BAC RP11-307E22 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 169964 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 107 caacaaatacatgtaccaat 126 |||||||||||||||||||| Sbjct: 90502 caacaaatacatgtaccaat 90483
>gb|AC099545.2| Homo sapiens chromosome 3 clone RP11-601G18, complete sequence Length = 158485 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 17 gtcgtgtaatttaattatagattt 40 |||||||||| ||||||||||||| Sbjct: 115908 gtcgtgtaatgtaattatagattt 115885
>gb|DQ377355.1| Norops auratus voucher LACM148890 NADH dehydrogenase subunit 2 (ND2) gene, complete cds; tRNA-Trp, tRNA-Ala, tRNA-Asn, tRNA-Cys, and tRNA-Tyr genes, complete sequence; and cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial Length = 1431 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 288 acccttgaagtacttctggc 307 |||||||||||||||||||| Sbjct: 364 acccttgaagtacttctggc 345
>gb|DQ377354.1| Norops auratus voucher LACM148982 NADH dehydrogenase subunit 2 (ND2) gene, complete cds; tRNA-Trp, tRNA-Ala, tRNA-Asn, tRNA-Cys, and tRNA-Tyr genes, complete sequence; and cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial Length = 1432 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 288 acccttgaagtacttctggc 307 |||||||||||||||||||| Sbjct: 364 acccttgaagtacttctggc 345
>gb|DQ377353.1| Norops auratus voucher LACM148978 NADH dehydrogenase subunit 2 (ND2) gene, complete cds; tRNA-Trp, tRNA-Ala, tRNA-Asn, tRNA-Cys, and tRNA-Tyr genes, complete sequence; and cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial Length = 1432 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 288 acccttgaagtacttctggc 307 |||||||||||||||||||| Sbjct: 364 acccttgaagtacttctggc 345
>gb|DQ377352.1| Norops auratus voucher LACM148976 NADH dehydrogenase subunit 2 (ND2) gene, complete cds; tRNA-Trp, tRNA-Ala, tRNA-Asn, tRNA-Cys, and tRNA-Tyr genes, complete sequence; and cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial Length = 1431 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 288 acccttgaagtacttctggc 307 |||||||||||||||||||| Sbjct: 364 acccttgaagtacttctggc 345
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 253 atctgggccttggccatcgc 272 |||||||||||||||||||| Sbjct: 2508715 atctgggccttggccatcgc 2508734
>gb|AC153570.9| Mus musculus 10 BAC RP23-221F6 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 216030 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 48 atacaaatacatgtacacat 67 |||||||||||||||||||| Sbjct: 33578 atacaaatacatgtacacat 33597
>gb|AC009032.8| Homo sapiens chromosome 16 clone RP11-140H17, complete sequence Length = 184511 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 50 acaaatacatgtacacatat 69 |||||||||||||||||||| Sbjct: 28454 acaaatacatgtacacatat 28473
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 tgtaatttaattatagattt 40 |||||||||||||||||||| Sbjct: 884300 tgtaatttaattatagattt 884281
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 242 cgtcggggtcgatctgggcc 261 |||||||||||||||||||| Sbjct: 18335702 cgtcggggtcgatctgggcc 18335683
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 47 gatacaaatacatgtacacatatt 70 ||||||||||||| |||||||||| Sbjct: 13913283 gatacaaatacatatacacatatt 13913306
>gb|AC012321.8| Homo sapiens chromosome 16 clone RP11-311C24, complete sequence Length = 131694 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 50 acaaatacatgtacacatat 69 |||||||||||||||||||| Sbjct: 100131 acaaatacatgtacacatat 100150
>gb|AC073485.3| Homo sapiens BAC clone RP11-798J16 from 2, complete sequence Length = 140811 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 47 gatacaaatacatgtacacatatt 70 ||||||||||| |||||||||||| Sbjct: 73829 gatacaaatacttgtacacatatt 73852
>gb|AC022471.8|AC022471 Genomic Sequence For Homo sapiens Clone 202M16 From Chromosome VI, complete sequence Length = 92144 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 46 agatacaaatacatgtacacatat 69 ||||||| |||||||||||||||| Sbjct: 16422 agatacatatacatgtacacatat 16445
>dbj|AP003764.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1051E10 Length = 207782 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 47 gatacaaatacatgtacacatatt 70 ||||||||||||| |||||||||| Sbjct: 73585 gatacaaatacatatacacatatt 73608
>gb|AC158648.2| Mus musculus 6 BAC RP23-431M16 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 205189 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 50 acaaatacatgtacacatat 69 |||||||||||||||||||| Sbjct: 157123 acaaatacatgtacacatat 157142
>gb|AC155836.5| Mus musculus 6 BAC RP24-511F13 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 147664 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 50 acaaatacatgtacacatat 69 |||||||||||||||||||| Sbjct: 70219 acaaatacatgtacacatat 70238
>dbj|AP005841.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0052M16 Length = 145423 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 242 cgtcggggtcgatctgggcc 261 |||||||||||||||||||| Sbjct: 136915 cgtcggggtcgatctgggcc 136896
>emb|AL162872.4|CNS01RI5 Human chromosome 14 DNA sequence BAC R-764E10 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 173106 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 attatagatttgttcaagat 49 |||||||||||||||||||| Sbjct: 65222 attatagatttgttcaagat 65241
>gb|AF004525.1|AF004525 Bufo viridis CAS182601 NADH dehydrogenase subunit I (ND1) gene, partial cds, tRNAIle, tRNAGln and tRNAMet genes, complete sequence, and NADH dehydrogenase subunit II (ND2) gene, partial cds, mitochondrial genes for mitochondrial products Length = 1063 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 288 acccttgaagtacttctggc 307 |||||||||||||||||||| Sbjct: 917 acccttgaagtacttctggc 898
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 tgtaatttaattatagattt 40 |||||||||||||||||||| Sbjct: 884300 tgtaatttaattatagattt 884281
>emb|BX000505.1|CNS08CDV Oryza sativa chromosome 12, . BAC OJ1126_F08 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 134217 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 tgtaatttaattatagattt 40 |||||||||||||||||||| Sbjct: 21885 tgtaatttaattatagattt 21866
>gb|AC140369.2| Mus musculus BAC clone RP23-200L3 from 3, complete sequence Length = 191613 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 50 acaaatacatgtacacatat 69 |||||||||||||||||||| Sbjct: 37156 acaaatacatgtacacatat 37175
>emb|AJ851868.2| Mus musculus immunoglobulin heavy chain locus constant region and partial variable region, strain 129/Sv Length = 1382053 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 50 acaaatacatgtacacatat 69 |||||||||||||||||||| Sbjct: 1186406 acaaatacatgtacacatat 1186425
>gb|AC151905.4| Mus musculus BAC clone RP23-205J22 from chromosome 8, complete sequence Length = 214760 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 49 tacaaatacatgtacacata 68 |||||||||||||||||||| Sbjct: 110183 tacaaatacatgtacacata 110202 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,275,243 Number of Sequences: 3902068 Number of extensions: 3275243 Number of successful extensions: 74405 Number of sequences better than 10.0: 73 Number of HSP's better than 10.0 without gapping: 73 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 74041 Number of HSP's gapped (non-prelim): 356 length of query: 345 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 323 effective length of database: 17,147,199,772 effective search space: 5538545526356 effective search space used: 5538545526356 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)