Clone Name | rbart07g10 |
---|---|
Clone Library Name | barley_pub |
>emb|AL138727.10| Human DNA sequence from clone RP1-144O21 on chromosome 6 Contains the 5' end of the MAP3K7IP2 gene for mitogen-activated protein kinase kinase kinase 7 interacting protein 2 (TAK1-binding protein 2)(TAB2, FLJ21885, KIAA0733) and a CpG island, complete sequence Length = 64096 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 354 ccacggccgccgccagcgccgc 375 |||||||||||||||||||||| Sbjct: 57155 ccacggccgccgccagcgccgc 57176
>emb|BX000348.22| Zebrafish DNA sequence from clone DKEY-94L16 in linkage group 12, complete sequence Length = 158133 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 297 aattaattaattactcgcccca 318 |||||||||||||||||||||| Sbjct: 39785 aattaattaattactcgcccca 39764
>gb|AC024451.8| Homo sapiens chromosome 11, clone RP11-697N18, complete sequence Length = 159791 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 83 tatacacaggaaggaacatgag 104 |||||||||||||||||||||| Sbjct: 80857 tatacacaggaaggaacatgag 80836
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 44.1 bits (22), Expect = 0.40 Identities = 28/30 (93%) Strand = Plus / Minus Query: 236 tctatccacaagcaaaaggcacaagaatat 265 |||||||||||||||||||| |||||||| Sbjct: 20799563 tctatccacaagcaaaaggctaaagaatat 20799534
>gb|AC117381.5| Homo sapiens 3 BAC RP11-783D3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 205933 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 62 ctaacaaaaaggaaggtgtttt 83 |||||||||||||||||||||| Sbjct: 32062 ctaacaaaaaggaaggtgtttt 32083
>dbj|AP006067.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0569E11 Length = 157319 Score = 44.1 bits (22), Expect = 0.40 Identities = 28/30 (93%) Strand = Plus / Minus Query: 236 tctatccacaagcaaaaggcacaagaatat 265 |||||||||||||||||||| |||||||| Sbjct: 74592 tctatccacaagcaaaaggctaaagaatat 74563
>dbj|AK068084.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013131N11, full insert sequence Length = 1626 Score = 44.1 bits (22), Expect = 0.40 Identities = 28/30 (93%) Strand = Plus / Minus Query: 236 tctatccacaagcaaaaggcacaagaatat 265 |||||||||||||||||||| |||||||| Sbjct: 1391 tctatccacaagcaaaaggctaaagaatat 1362
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 339 acgacaccagcaaggccacggc 360 |||||||||||||||||||||| Sbjct: 5603497 acgacaccagcaaggccacggc 5603518
>gb|DQ314877.1| Homo sapiens mitogen-activated protein kinase kinase kinase 7 interacting protein 2 (MAP3K7IP2) gene, complete cds Length = 97056 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 354 ccacggccgccgccagcgccgc 375 |||||||||||||||||||||| Sbjct: 1943 ccacggccgccgccagcgccgc 1922
>ref|XM_480219.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1923 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 337 cgacgacaccagcaaggccac 357 ||||||||||||||||||||| Sbjct: 537 cgacgacaccagcaaggccac 557
>ref|XM_463067.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1318 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 351 aggccacggccgccgccagcgccgc 375 |||||||||||||||||| |||||| Sbjct: 94 aggccacggccgccgccatcgccgc 70
>gb|AE006375.1| Lactococcus lactis subsp. lactis IL1403 section 137 of 218 of the complete genome Length = 11711 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 245 aagcaaaaggcacaagaatat 265 ||||||||||||||||||||| Sbjct: 4692 aagcaaaaggcacaagaatat 4672
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 351 aggccacggccgccgccagcgccgc 375 |||||||||||||||||| |||||| Sbjct: 21306139 aggccacggccgccgccatcgccgc 21306115 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 349 caaggccacggccgccgcca 368 |||||||||||||||||||| Sbjct: 35771170 caaggccacggccgccgcca 35771189
>gb|AC113599.10| Mus musculus chromosome 18, clone RP23-5D23, complete sequence Length = 217989 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 366 ccagcgccgctctgagcgccgcccccgcc 394 |||||||| ||||| |||||||||||||| Sbjct: 62690 ccagcgccactctgtgcgccgcccccgcc 62662
>gb|AC133333.5| Oryza sativa chromosome 3 BAC OJ1785_A05 genomic sequence, complete sequence Length = 174910 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 351 aggccacggccgccgccagcgccgc 375 |||||||||||||||||| |||||| Sbjct: 162054 aggccacggccgccgccatcgccgc 162030
>emb|Z70753.1|CEF40F9 Caenorhabditis elegans Cosmid F40F9, complete sequence Length = 36012 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 52 cgaaaaatttctaacaaaaag 72 ||||||||||||||||||||| Sbjct: 4840 cgaaaaatttctaacaaaaag 4860
>gb|DQ352866.1| Tetramorium hispidum voucher CS0278 abdominal-A (AbdA) gene, partial cds Length = 648 Score = 42.1 bits (21), Expect = 1.6 Identities = 39/45 (86%) Strand = Plus / Plus Query: 354 ccacggccgccgccagcgccgctctgagcgccgcccccgccgtcg 398 ||||||||||| ||||||| || ||| ||||||| ||||||||| Sbjct: 365 ccacggccgcctccagcgctgccctggccgccgccgccgccgtcg 409
>gb|AC025586.4| Genomic sequence for Mus musculus, clone RP23-320C8, complete sequence Length = 185386 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 291 caagctaattaattaattact 311 ||||||||||||||||||||| Sbjct: 30731 caagctaattaattaattact 30711
>ref|NM_073100.3| Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-120) (tag-120) mRNA, complete cds Length = 1050 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 52 cgaaaaatttctaacaaaaag 72 ||||||||||||||||||||| Sbjct: 916 cgaaaaatttctaacaaaaag 896
>ref|NM_171511.3| Caenorhabditis elegans X-BoX promoter element regulated family member (xbx-6) (xbx-6) mRNA, complete cds Length = 1150 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 52 cgaaaaatttctaacaaaaag 72 ||||||||||||||||||||| Sbjct: 1038 cgaaaaatttctaacaaaaag 1058
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 337 cgacgacaccagcaaggccac 357 ||||||||||||||||||||| Sbjct: 3726862 cgacgacaccagcaaggccac 3726882
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 351 aggccacggccgccgccagcgccgc 375 |||||||||||||||||| |||||| Sbjct: 21299168 aggccacggccgccgccatcgccgc 21299144 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 349 caaggccacggccgccgcca 368 |||||||||||||||||||| Sbjct: 35861300 caaggccacggccgccgcca 35861319
>gb|AC104770.10| Homo sapiens chromosome 17, clone RP11-960B9, complete sequence Length = 188574 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 76 ggtgttttatacacaggaagg 96 ||||||||||||||||||||| Sbjct: 66183 ggtgttttatacacaggaagg 66203
>dbj|AP005847.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ9990_A01 Length = 101684 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 337 cgacgacaccagcaaggccac 357 ||||||||||||||||||||| Sbjct: 50359 cgacgacaccagcaaggccac 50379
>dbj|AK099233.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013098D10, full insert sequence Length = 1298 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 351 aggccacggccgccgccagcgccgc 375 |||||||||||||||||| |||||| Sbjct: 94 aggccacggccgccgccatcgccgc 70
>dbj|AK071725.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023113B05, full insert sequence Length = 1923 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 337 cgacgacaccagcaaggccac 357 ||||||||||||||||||||| Sbjct: 537 cgacgacaccagcaaggccac 557
>dbj|AK064786.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000B17, full insert sequence Length = 1318 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 351 aggccacggccgccgccagcgccgc 375 |||||||||||||||||| |||||| Sbjct: 94 aggccacggccgccgccatcgccgc 70
>emb|CT030637.9| Mouse DNA sequence from clone RP23-123H11 on chromosome 14, complete sequence Length = 239552 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 248 caaaaggcacaagaatatgattctc 272 ||||||||||||| ||||||||||| Sbjct: 87051 caaaaggcacaaggatatgattctc 87075
>emb|AL592422.11| Mouse DNA sequence from clone RP23-218O16 on chromosome 11, complete sequence Length = 205668 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 291 caagctaattaattaattact 311 ||||||||||||||||||||| Sbjct: 116090 caagctaattaattaattact 116070
>dbj|AB005290.1| Oryza sativa (japonica cultivar-group) mRNA for plastid RNA polymerase sigma factor, complete cds Length = 2026 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 337 cgacgacaccagcaaggccac 357 ||||||||||||||||||||| Sbjct: 642 cgacgacaccagcaaggccac 662
>ref|XM_470465.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1083 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 349 caaggccacggccgccgcca 368 |||||||||||||||||||| Sbjct: 103 caaggccacggccgccgcca 122
>gb|BT016583.1| Zea mays clone Contig416 mRNA sequence Length = 1348 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 359 gccgccgccagcgccgctct 378 |||||||||||||||||||| Sbjct: 95 gccgccgccagcgccgctct 76
>gb|CP000145.1| Rhodobacter sphaeroides 2.4.1 plasmid B, complete sequence Length = 114178 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 357 cggccgccgccagcgccgct 376 |||||||||||||||||||| Sbjct: 112522 cggccgccgccagcgccgct 112541
>gb|AC128647.8| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0062G19, complete sequence Length = 92392 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 349 caaggccacggccgccgcca 368 |||||||||||||||||||| Sbjct: 25109 caaggccacggccgccgcca 25128
>ref|XM_369905.1| Magnaporthe grisea 70-15 hypothetical protein (MG06420.4) partial mRNA Length = 1527 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 356 acggccgccgccagcgccgc 375 |||||||||||||||||||| Sbjct: 349 acggccgccgccagcgccgc 368
>ref|XM_415718.1| PREDICTED: Gallus gallus similar to hypothetical protein FLJ20315 (LOC417470), mRNA Length = 7051 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 354 ccacggccgccgccagcgcc 373 |||||||||||||||||||| Sbjct: 901 ccacggccgccgccagcgcc 882
>ref|XM_868170.1| PREDICTED: Bos taurus similar to G protein-coupled receptor kinase-interactor 2 isoform 3, transcript variant 2 (LOC516048), mRNA Length = 2626 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 357 cggccgccgccagcgccgct 376 |||||||||||||||||||| Sbjct: 48 cggccgccgccagcgccgct 67
>ref|XM_594180.2| PREDICTED: Bos taurus similar to G protein-coupled receptor kinase-interactor 2 isoform 3, transcript variant 1 (LOC516048), mRNA Length = 2164 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 357 cggccgccgccagcgccgct 376 |||||||||||||||||||| Sbjct: 48 cggccgccgccagcgccgct 67
>ref|XM_881321.1| PREDICTED: Bos taurus similar to G protein-coupled receptor kinase-interactor 2 isoform 3, transcript variant 9 (LOC516048), mRNA Length = 2053 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 357 cggccgccgccagcgccgct 376 |||||||||||||||||||| Sbjct: 48 cggccgccgccagcgccgct 67
>ref|XM_881305.1| PREDICTED: Bos taurus similar to G protein-coupled receptor kinase-interactor 2 isoform 3, transcript variant 8 (LOC516048), mRNA Length = 2344 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 357 cggccgccgccagcgccgct 376 |||||||||||||||||||| Sbjct: 48 cggccgccgccagcgccgct 67
>ref|XM_881289.1| PREDICTED: Bos taurus similar to G protein-coupled receptor kinase-interactor 2 isoform 3, transcript variant 7 (LOC516048), mRNA Length = 2197 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 357 cggccgccgccagcgccgct 376 |||||||||||||||||||| Sbjct: 48 cggccgccgccagcgccgct 67
>ref|XM_881268.1| PREDICTED: Bos taurus similar to G protein-coupled receptor kinase-interactor 2 isoform 3, transcript variant 6 (LOC516048), mRNA Length = 2284 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 357 cggccgccgccagcgccgct 376 |||||||||||||||||||| Sbjct: 48 cggccgccgccagcgccgct 67
>ref|XM_881238.1| PREDICTED: Bos taurus similar to G protein-coupled receptor kinase-interactor 2 isoform 3, transcript variant 4 (LOC516048), mRNA Length = 2200 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 357 cggccgccgccagcgccgct 376 |||||||||||||||||||| Sbjct: 48 cggccgccgccagcgccgct 67
>ref|XM_881221.1| PREDICTED: Bos taurus similar to G protein-coupled receptor kinase-interactor 2 isoform 3, transcript variant 3 (LOC516048), mRNA Length = 2323 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 357 cggccgccgccagcgccgct 376 |||||||||||||||||||| Sbjct: 48 cggccgccgccagcgccgct 67
>gb|AC098571.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1126_B10, complete sequence Length = 127304 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 355 cacggccgccgccagcgccg 374 |||||||||||||||||||| Sbjct: 51648 cacggccgccgccagcgccg 51667
>gb|AC024209.1| Caenorhabditis elegans cosmid Y75D11A, complete sequence Length = 33011 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 264 atgattctcatcacgtcctc 283 |||||||||||||||||||| Sbjct: 2066 atgattctcatcacgtcctc 2047
>gb|AY514490.1| Homo sapiens cytochrome P450, family 2, subfamily C, polypeptide 8 (CYP2C8) gene, complete cds Length = 36587 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 109 aagatttgggagagataaat 128 |||||||||||||||||||| Sbjct: 24445 aagatttgggagagataaat 24464
>gb|AY243801.1| Zea mays aquaporin (PIP2-1) mRNA, complete cds Length = 1133 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 359 gccgccgccagcgccgctct 378 |||||||||||||||||||| Sbjct: 43 gccgccgccagcgccgctct 24
>emb|CR956640.5| Pig DNA sequence from clone CH242-155M9 on chromosome 17, complete sequence Length = 182043 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 168 aaaaatatgcagcacaagta 187 |||||||||||||||||||| Sbjct: 69466 aaaaatatgcagcacaagta 69447
>gb|AC104095.4| Mus musculus BAC clone RP23-403G12 from chromosome 19, complete sequence Length = 187859 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 290 tcaagctaattaattaatta 309 |||||||||||||||||||| Sbjct: 104809 tcaagctaattaattaatta 104790
>ref|XM_718796.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY03699) partial mRNA Length = 885 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 183 aagtatactactagtataaa 202 |||||||||||||||||||| Sbjct: 364 aagtatactactagtataaa 383
>ref|XM_545906.2| PREDICTED: Canis familiaris similar to SH3 domain and tetratricopeptide repeats 1 (LOC488788), mRNA Length = 4449 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 354 ccacggccgccgccagcgcc 373 |||||||||||||||||||| Sbjct: 4243 ccacggccgccgccagcgcc 4224
>ref|XM_846280.1| PREDICTED: Canis familiaris similar to CG4497-PA (LOC609077), mRNA Length = 990 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 375 ctctgagcgccgcccccgcc 394 |||||||||||||||||||| Sbjct: 93 ctctgagcgccgcccccgcc 112
>emb|AL359672.19| Human DNA sequence from clone RP11-208C17 on chromosome 10 Contains the CYP2C9 gene for cytochrome P450 family 2 subfamily C polypeptide 9, a mitochondrial NADH dehydrogenase 4 (MTND4) pseudogene, a pseudogene similar to part of cytochrome P450 family 2 subfamily C, a novel pseudogene and the CYP2C8 gene for cytochrome P450 family 2 subfamily C polypeptide 8, complete sequence Length = 143181 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 109 aagatttgggagagataaat 128 |||||||||||||||||||| Sbjct: 118207 aagatttgggagagataaat 118188
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 411 cgccgttctcgccggtcgccaggc 434 ||||||||||| |||||||||||| Sbjct: 2416206 cgccgttctcggcggtcgccaggc 2416229
>gb|AF521085.1| Streptomyces nanchangensis NS3226 polyether ionophore nanchangmycin biosynthetic gene cluster, complete sequence Length = 132544 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 353 gccacggccgccgccagcgc 372 |||||||||||||||||||| Sbjct: 28670 gccacggccgccgccagcgc 28651
>emb|CR381704.5| Zebrafish DNA sequence from clone CH211-202F6 in linkage group 14, complete sequence Length = 130789 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 caaaaaggaaggtgttttat 85 |||||||||||||||||||| Sbjct: 93670 caaaaaggaaggtgttttat 93651
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 359 gccgccgccagcgccgctct 378 |||||||||||||||||||| Sbjct: 6924038 gccgccgccagcgccgctct 6924019
>emb|BX324195.8| Zebrafish DNA sequence from clone CH211-288O15 in linkage group 14, complete sequence Length = 156128 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 66 caaaaaggaaggtgttttat 85 |||||||||||||||||||| Sbjct: 85958 caaaaaggaaggtgttttat 85977
>gb|AC104608.7| Drosophila melanogaster X BAC RP98-35A18 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 174893 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 290 tcaagctaattaattaatta 309 |||||||||||||||||||| Sbjct: 139650 tcaagctaattaattaatta 139631
>gb|AE005710.1| Caulobacter crescentus CB15 section 36 of 359 of the complete genome Length = 11283 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 343 caccagcaaggccacggccgccgc 366 ||||||| |||||||||||||||| Sbjct: 7334 caccagcgaggccacggccgccgc 7311
>gb|AC091699.6| Homo sapiens chromosome 10 clone RP11-296D9, complete sequence Length = 196856 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 291 caagctaattaattaattac 310 |||||||||||||||||||| Sbjct: 166545 caagctaattaattaattac 166526
>gb|AC022026.7| Homo sapiens chromosome 10 clone RP11-506B4, complete sequence Length = 170834 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 291 caagctaattaattaattac 310 |||||||||||||||||||| Sbjct: 50708 caagctaattaattaattac 50689
>gb|AC113405.2| Homo sapiens chromosome 5 clone RP11-467C9, complete sequence Length = 134319 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 acagcatgtgacaagaggaa 47 |||||||||||||||||||| Sbjct: 20340 acagcatgtgacaagaggaa 20321
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 407 gcggcgccgttctcgccggtcgcc 430 ||||||||||||||| |||||||| Sbjct: 2950010 gcggcgccgttctcgtcggtcgcc 2949987
>ref|NM_075919.1| Caenorhabditis elegans Y75D11A.2 (Y75D11A.2) mRNA, complete cds Length = 543 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 264 atgattctcatcacgtcctc 283 |||||||||||||||||||| Sbjct: 284 atgattctcatcacgtcctc 265
>gb|AF281817.1|AF281817 Tupaia herpesvirus strain 2, complete genome Length = 195859 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 375 ctctgagcgccgcccccgccgtcg 398 |||||||||||||| ||||||||| Sbjct: 135035 ctctgagcgccgccgccgccgtcg 135012
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 355 cacggccgccgccagcgccg 374 |||||||||||||||||||| Sbjct: 28523955 cacggccgccgccagcgccg 28523974
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 291 caagctaattaattaattac 310 |||||||||||||||||||| Sbjct: 12064245 caagctaattaattaattac 12064226
>gb|AF326491.1|AF326491 Zea mays plasma membrane integral protein ZmPIP2-1 mRNA, complete cds Length = 1171 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 359 gccgccgccagcgccgctct 378 |||||||||||||||||||| Sbjct: 114 gccgccgccagcgccgctct 95
>emb|BX004830.7| Zebrafish DNA sequence from clone CH211-159I8 in linkage group 14, complete sequence Length = 201070 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 66 caaaaaggaaggtgttttat 85 |||||||||||||||||||| Sbjct: 149436 caaaaaggaaggtgttttat 149455
>gb|AC080164.6| Homo sapiens BAC clone RP11-550H11 from 2, complete sequence Length = 82954 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 aaatttctaacaaaaaggaa 75 |||||||||||||||||||| Sbjct: 16051 aaatttctaacaaaaaggaa 16070
>gb|AC154850.2| Mus musculus BAC clone RP23-36B4 from chromosome 9, complete sequence Length = 247708 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 234 tctctatccacaagcaaaag 253 |||||||||||||||||||| Sbjct: 148077 tctctatccacaagcaaaag 148058
>gb|AE004621.1| Pseudomonas aeruginosa PAO1, section 182 of 529 of the complete genome Length = 10565 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 408 cggcgccgttctcgccggtc 427 |||||||||||||||||||| Sbjct: 6050 cggcgccgttctcgccggtc 6031
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 6.3 Identities = 32/36 (88%) Strand = Plus / Plus Query: 359 gccgccgccagcgccgctctgagcgccgcccccgcc 394 ||||||||||||||||| | ||||| |||| ||||| Sbjct: 2170487 gccgccgccagcgccgcccagagcggcgccaccgcc 2170522
>dbj|AK179024.1| Mus musculus cDNA, clone:Y0G0108N04, strand:unspecified Length = 573 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 aaaaatttctaacaaaaagg 73 |||||||||||||||||||| Sbjct: 135 aaaaatttctaacaaaaagg 154
>dbj|AP005476.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0026D20 Length = 130634 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 291 caagctaattaattaattac 310 |||||||||||||||||||| Sbjct: 12550 caagctaattaattaattac 12531
>gb|AC024871.1|AC024871 Caenorhabditis elegans clone Y75D11A, complete sequence Length = 33011 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 264 atgattctcatcacgtcctc 283 |||||||||||||||||||| Sbjct: 2066 atgattctcatcacgtcctc 2047
>emb|Y14201.1|HVY14201 Hordeum vulgare mRNA for hypothetical protein, clone pBH6-12 Length = 829 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 acaagtatactactagtata 200 |||||||||||||||||||| Sbjct: 768 acaagtatactactagtata 749
>dbj|AK106030.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-D02, full insert sequence Length = 1173 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 349 caaggccacggccgccgcca 368 |||||||||||||||||||| Sbjct: 106 caaggccacggccgccgcca 125
>dbj|AK067858.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013123A10, full insert sequence Length = 998 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 349 caaggccacggccgccgcca 368 |||||||||||||||||||| Sbjct: 134 caaggccacggccgccgcca 153
>gb|AF172724.1|AF172724 Caulobacter crescentus structural maintenance of chromosomes protein homolog Smc (smc) gene, complete cds Length = 3701 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 343 caccagcaaggccacggccgccgc 366 ||||||| |||||||||||||||| Sbjct: 843 caccagcgaggccacggccgccgc 866
>dbj|AK061467.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-C12, full insert sequence Length = 1173 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 349 caaggccacggccgccgcca 368 |||||||||||||||||||| Sbjct: 106 caaggccacggccgccgcca 125
>dbj|AK060030.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-G09, full insert sequence Length = 973 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 349 caaggccacggccgccgcca 368 |||||||||||||||||||| Sbjct: 106 caaggccacggccgccgcca 125
>gb|AC108791.9| Mus musculus chromosome 1, clone RP24-292D18, complete sequence Length = 162007 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 79 gttttatacacaggaaggaa 98 |||||||||||||||||||| Sbjct: 46480 gttttatacacaggaaggaa 46461
>gb|AF152363.1|AF152363 Homo sapiens constitutive fragile region FRA3B sequence Length = 185763 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 107 tcaagatttgggagagataa 126 |||||||||||||||||||| Sbjct: 87014 tcaagatttgggagagataa 87033
>gb|AE003440.3| Drosophila melanogaster chromosome X, section 24 of 74 of the complete sequence Length = 342195 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 290 tcaagctaattaattaatta 309 |||||||||||||||||||| Sbjct: 327119 tcaagctaattaattaatta 327138
>gb|AC004230.1|AC004230 Homo sapiens Chromosome 11q12.2 PAC clone pDJ671j21, complete sequence Length = 102926 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 375 ctctgagcgccgcccccgcc 394 |||||||||||||||||||| Sbjct: 70872 ctctgagcgccgcccccgcc 70891
>gb|AC123702.11| Mus musculus chromosome 19, clone RP23-341D12, complete sequence Length = 154959 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 82 ttatacacaggaaggaacatgagc 105 |||||| ||||||||||||||||| Sbjct: 61391 ttatacccaggaaggaacatgagc 61414
>gb|AF010496.1|AF010496 Rhodobacter capsulatus strain SB1003, partial genome Length = 189370 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 352 ggccacggccgccgccagcgccgc 375 |||| ||||||||||||||||||| Sbjct: 8420 ggcctcggccgccgccagcgccgc 8397
>dbj|AP001363.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-864I4, complete sequence Length = 58001 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 375 ctctgagcgccgcccccgcc 394 |||||||||||||||||||| Sbjct: 43238 ctctgagcgccgcccccgcc 43257
>dbj|AP002990.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-838H22, complete sequence Length = 53000 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 375 ctctgagcgccgcccccgcc 394 |||||||||||||||||||| Sbjct: 5925 ctctgagcgccgcccccgcc 5944 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,466,148 Number of Sequences: 3902068 Number of extensions: 4466148 Number of successful extensions: 153975 Number of sequences better than 10.0: 92 Number of HSP's better than 10.0 without gapping: 94 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 152867 Number of HSP's gapped (non-prelim): 1108 length of query: 468 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 446 effective length of database: 17,147,199,772 effective search space: 7647651098312 effective search space used: 7647651098312 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)