ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart07g08 |
|---|---|
| Clone Library Name | barley_pub |
>SYNPO_MOUSE (Q8CC35) Synaptopodin| Length = 929 Score = 32.0 bits (71), Expect = 0.65 Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 8/94 (8%) Frame = +1 Query: 85 SIFHNKAPEN*NAKLGSTKLQPK*CSISVWSIW--------MDDSTSSATKERSIDGRLG 240 S++H PEN + TK QP S++++ +TSS T R++ R Sbjct: 773 SLYHGYLPENGVLRPEPTKQQPYQMRPSLYALSPVKEPAKASSRATSSRTPSRTVSPRAA 832 Query: 241 QHLPPATRPEGMNAVPSLPVIQVNHLPDCPPPDR 342 PA +P ++ VP+LP + P P P R Sbjct: 833 S---PA-KPSSLDLVPNLPRAGLPPSPALPRPSR 862
>AMY6_HORVU (P04750) Alpha-amylase type B isozyme precursor (EC 3.2.1.1)| (1,4-alpha-D-glucan glucanohydrolase) (Clones GRAMY56 and 963) Length = 429 Score = 31.6 bits (70), Expect = 0.85 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = -3 Query: 339 IGWWAVRKVVYLDNWKTGYSIHTFWP 262 IGWW + V ++DN TG + H WP Sbjct: 300 IGWWPAKAVTFVDNHDTGSTQH-MWP 324
>SYNPO_RAT (Q9Z327) Synaptopodin| Length = 931 Score = 31.6 bits (70), Expect = 0.85 Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 4/90 (4%) Frame = +1 Query: 85 SIFHNKAPEN*NAKLGSTKLQPK*CSISVWSIWMDDS----TSSATKERSIDGRLGQHLP 252 S++H PEN + TK QP S++++ +S AT R+ + Sbjct: 775 SLYHGYLPENGVLRPEPTKQQPHQMRPSLYALSPVKEPAKISSRATSSRASSRTVSPRAA 834 Query: 253 PATRPEGMNAVPSLPVIQVNHLPDCPPPDR 342 +P ++ VP+LP + P P P R Sbjct: 835 SPAKPSSLDLVPNLPRAGLPPSPALPRPSR 864
>AMY3_HORVU (P04747) Alpha-amylase type B isozyme precursor (EC 3.2.1.1)| (1,4-alpha-D-glucan glucanohydrolase) (Clone PHV19) (Fragment) Length = 368 Score = 31.6 bits (70), Expect = 0.85 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = -3 Query: 339 IGWWAVRKVVYLDNWKTGYSIHTFWP 262 IGWW + V ++DN TG + H WP Sbjct: 298 IGWWPAKAVTFVDNHDTGSTQH-MWP 322
>AMY2_HORVU (P04063) Alpha-amylase type B isozyme precursor (EC 3.2.1.1)| (1,4-alpha-D-glucan glucanohydrolase) (AMY2-2) (High pI alpha-amylase) Length = 427 Score = 31.6 bits (70), Expect = 0.85 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = -3 Query: 339 IGWWAVRKVVYLDNWKTGYSIHTFWP 262 IGWW + V ++DN TG + H WP Sbjct: 298 IGWWPAKAVTFVDNHDTGSTQH-MWP 322
>AMY4_HORVU (P04748) Alpha-amylase type B isozyme (EC 3.2.1.1)| (1,4-alpha-D-glucan glucanohydrolase) (Clone 103) (Fragment) Length = 153 Score = 31.6 bits (70), Expect = 0.85 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = -3 Query: 339 IGWWAVRKVVYLDNWKTGYSIHTFWP 262 IGWW + V ++DN TG + H WP Sbjct: 24 IGWWPAKAVTFVDNHDTGSTQH-MWP 48
>AMC2_ORYSA (P27941) Alpha-amylase isozyme C2 precursor (EC 3.2.1.1)| (1,4-alpha-D-glucan glucanohydrolase) Length = 445 Score = 30.8 bits (68), Expect = 1.5 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = -3 Query: 339 IGWWAVRKVVYLDNWKTGYSIHTFWP 262 IGWW + V ++DN TG S WP Sbjct: 299 IGWWPAKAVTFVDNHDTG-STQQMWP 323
>AM2A_ORYSA (P27935) Alpha-amylase isozyme 2A precursor (EC 3.2.1.1)| (1,4-alpha-D-glucan glucanohydrolase) Length = 445 Score = 30.8 bits (68), Expect = 1.5 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = -3 Query: 339 IGWWAVRKVVYLDNWKTGYSIHTFWP 262 IGWW + V ++DN TG S WP Sbjct: 299 IGWWPAKAVTFVDNHDTG-STQQMWP 323
>AMY1_ORYSA (P17654) Alpha-amylase precursor (EC 3.2.1.1) (1,4-alpha-D-glucan| glucanohydrolase) (Isozyme 1B) Length = 434 Score = 30.0 bits (66), Expect = 2.5 Identities = 11/26 (42%), Positives = 15/26 (57%) Frame = -3 Query: 339 IGWWAVRKVVYLDNWKTGYSIHTFWP 262 IGWW + ++DN TG + H WP Sbjct: 305 IGWWPAKATTFVDNHDTGSTQH-LWP 329
>G3OX2_ARATH (Q9ZT84) Gibberellin 3-beta-dioxygenase 2 (EC 1.14.11.15)| (Gibberellin 3 beta-hydroxylase 2) (GA 3-oxidase 2) (AtGA3ox2) Length = 347 Score = 30.0 bits (66), Expect = 2.5 Identities = 11/15 (73%), Positives = 12/15 (80%) Frame = +1 Query: 298 VIQVNHLPDCPPPDR 342 VIQ+NH P CP PDR Sbjct: 204 VIQLNHYPKCPEPDR 218
>ZN161_HUMAN (Q14119) Zinc finger protein 161 (Putative transcription factor| DB1) Length = 516 Score = 29.6 bits (65), Expect = 3.2 Identities = 14/52 (26%), Positives = 20/52 (38%) Frame = +1 Query: 259 TRPEGMNAVPSLPVIQVNHLPDCPPPDRHDCQHCKSLCLQALHLHQQVCDHS 414 T P + ++PV Q P P H C+ C HL++ HS Sbjct: 146 TNPSSSASTTAMPVTQSVKKPSKPVKKNHACEMCGKAFRDVYHLNRHKLSHS 197
>UDG_RHIME (O54068) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc| dehydrogenase) (UDP-GlcDH) (UDPGDH) Length = 437 Score = 28.9 bits (63), Expect = 5.5 Identities = 13/47 (27%), Positives = 28/47 (59%) Frame = -1 Query: 302 ITGRLGTAFIPSGRVAGGKCCPNRPSMLLSFVAEDVESSIQIDHTEI 162 + GR+G+ F+ +G GG C P + ++ L A+D ++ +++ T + Sbjct: 246 LDGRIGSKFLHAGPGYGGSCFP-KDTLALVKTAQDHDTPVRLVETTV 291
>BLK_HUMAN (P51451) Tyrosine-protein kinase BLK (EC 2.7.10.2) (B lymphocyte| kinase) (p55-BLK) Length = 504 Score = 28.9 bits (63), Expect = 5.5 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%) Frame = +1 Query: 193 STSSATKERSIDGR-LGQHLPPATRPEGMNAVPSLPVIQVNHLPDCPPPDRH 345 S+ KE+ I + GQ P + +A P P++ NHL PPPD H Sbjct: 4 SSKKPDKEKPIKEKDKGQWSPLKVSAQDKDAPPLPPLVVFNHLTP-PPPDEH 54
>AMY1_HORVU (P00693) Alpha-amylase type A isozyme precursor (EC 3.2.1.1)| (1,4-alpha-D-glucan glucanohydrolase) (AMY1) (Low pI alpha-amylase) Length = 438 Score = 28.5 bits (62), Expect = 7.2 Identities = 10/26 (38%), Positives = 14/26 (53%) Frame = -3 Query: 339 IGWWAVRKVVYLDNWKTGYSIHTFWP 262 +GWW + ++DN TG S WP Sbjct: 300 MGWWPAKAATFVDNHDTG-STQAMWP 324
>FA12_CAVPO (Q04962) Coagulation factor XII precursor (EC 3.4.21.38) (Hageman| factor) (HAF) [Contains: Coagulation factor XIIa heavy chain; Coagulation factor XIIa light chain] (Fragment) Length = 603 Score = 28.5 bits (62), Expect = 7.2 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 2/29 (6%) Frame = +1 Query: 337 DRHD--CQHCKSLCLQALHLHQQVCDHSY 417 DRH+ C+HC++L + + LH+ SY Sbjct: 416 DRHNQSCEHCQTLAVHSYRLHEAFSPSSY 444
>PTN23_RAT (O88902) Tyrosine-protein phosphatase non-receptor type 23 (EC| 3.1.3.48) (His-domain-containing protein tyrosine phosphatase) (HD-PTP) (Protein tyrosine phosphatase TD14) (PTP-TD14) (Fragment) Length = 1499 Score = 28.5 bits (62), Expect = 7.2 Identities = 14/31 (45%), Positives = 18/31 (58%) Frame = +1 Query: 247 LPPATRPEGMNAVPSLPVIQVNHLPDCPPPD 339 LPPA+ PE A PS P + LP+ P P+ Sbjct: 1392 LPPASLPEPTPAPPSSPPPPSSPLPEPPQPE 1422
>BAT2_RAT (Q6MG48) Large proline-rich protein BAT2 (HLA-B-associated| transcript 2) Length = 2161 Score = 28.1 bits (61), Expect = 9.4 Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 4/56 (7%) Frame = +1 Query: 190 DSTSSATKERSIDGRLG----QHLPPATRPEGMNAVPSLPVIQVNHLPDCPPPDRH 345 DS S+A +E DG+ G LPP N+ PS +P PPP H Sbjct: 360 DSQSAAGEEPETDGKKGTSPGSELPPPKTAWTENSRPSETEPAAPPIPKPPPPPPH 415 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 65,307,935 Number of Sequences: 219361 Number of extensions: 1409741 Number of successful extensions: 3978 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 3822 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3976 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2453576370 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
