ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart07g08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SYNPO_MOUSE (Q8CC35) Synaptopodin 32 0.65
2AMY6_HORVU (P04750) Alpha-amylase type B isozyme precursor (EC 3... 32 0.85
3SYNPO_RAT (Q9Z327) Synaptopodin 32 0.85
4AMY3_HORVU (P04747) Alpha-amylase type B isozyme precursor (EC 3... 32 0.85
5AMY2_HORVU (P04063) Alpha-amylase type B isozyme precursor (EC 3... 32 0.85
6AMY4_HORVU (P04748) Alpha-amylase type B isozyme (EC 3.2.1.1) (1... 32 0.85
7AMC2_ORYSA (P27941) Alpha-amylase isozyme C2 precursor (EC 3.2.1... 31 1.5
8AM2A_ORYSA (P27935) Alpha-amylase isozyme 2A precursor (EC 3.2.1... 31 1.5
9AMY1_ORYSA (P17654) Alpha-amylase precursor (EC 3.2.1.1) (1,4-al... 30 2.5
10G3OX2_ARATH (Q9ZT84) Gibberellin 3-beta-dioxygenase 2 (EC 1.14.1... 30 2.5
11ZN161_HUMAN (Q14119) Zinc finger protein 161 (Putative transcrip... 30 3.2
12UDG_RHIME (O54068) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UD... 29 5.5
13BLK_HUMAN (P51451) Tyrosine-protein kinase BLK (EC 2.7.10.2) (B ... 29 5.5
14AMY1_HORVU (P00693) Alpha-amylase type A isozyme precursor (EC 3... 28 7.2
15FA12_CAVPO (Q04962) Coagulation factor XII precursor (EC 3.4.21.... 28 7.2
16PTN23_RAT (O88902) Tyrosine-protein phosphatase non-receptor typ... 28 7.2
17BAT2_RAT (Q6MG48) Large proline-rich protein BAT2 (HLA-B-associa... 28 9.4

>SYNPO_MOUSE (Q8CC35) Synaptopodin|
          Length = 929

 Score = 32.0 bits (71), Expect = 0.65
 Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 8/94 (8%)
 Frame = +1

Query: 85   SIFHNKAPEN*NAKLGSTKLQPK*CSISVWSIW--------MDDSTSSATKERSIDGRLG 240
            S++H   PEN   +   TK QP     S++++            +TSS T  R++  R  
Sbjct: 773  SLYHGYLPENGVLRPEPTKQQPYQMRPSLYALSPVKEPAKASSRATSSRTPSRTVSPRAA 832

Query: 241  QHLPPATRPEGMNAVPSLPVIQVNHLPDCPPPDR 342
                PA +P  ++ VP+LP   +   P  P P R
Sbjct: 833  S---PA-KPSSLDLVPNLPRAGLPPSPALPRPSR 862



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>AMY6_HORVU (P04750) Alpha-amylase type B isozyme precursor (EC 3.2.1.1)|
           (1,4-alpha-D-glucan glucanohydrolase) (Clones GRAMY56
           and 963)
          Length = 429

 Score = 31.6 bits (70), Expect = 0.85
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 339 IGWWAVRKVVYLDNWKTGYSIHTFWP 262
           IGWW  + V ++DN  TG + H  WP
Sbjct: 300 IGWWPAKAVTFVDNHDTGSTQH-MWP 324



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>SYNPO_RAT (Q9Z327) Synaptopodin|
          Length = 931

 Score = 31.6 bits (70), Expect = 0.85
 Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 4/90 (4%)
 Frame = +1

Query: 85   SIFHNKAPEN*NAKLGSTKLQPK*CSISVWSIWMDDS----TSSATKERSIDGRLGQHLP 252
            S++H   PEN   +   TK QP     S++++         +S AT  R+    +     
Sbjct: 775  SLYHGYLPENGVLRPEPTKQQPHQMRPSLYALSPVKEPAKISSRATSSRASSRTVSPRAA 834

Query: 253  PATRPEGMNAVPSLPVIQVNHLPDCPPPDR 342
               +P  ++ VP+LP   +   P  P P R
Sbjct: 835  SPAKPSSLDLVPNLPRAGLPPSPALPRPSR 864



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>AMY3_HORVU (P04747) Alpha-amylase type B isozyme precursor (EC 3.2.1.1)|
           (1,4-alpha-D-glucan glucanohydrolase) (Clone PHV19)
           (Fragment)
          Length = 368

 Score = 31.6 bits (70), Expect = 0.85
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 339 IGWWAVRKVVYLDNWKTGYSIHTFWP 262
           IGWW  + V ++DN  TG + H  WP
Sbjct: 298 IGWWPAKAVTFVDNHDTGSTQH-MWP 322



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>AMY2_HORVU (P04063) Alpha-amylase type B isozyme precursor (EC 3.2.1.1)|
           (1,4-alpha-D-glucan glucanohydrolase) (AMY2-2) (High pI
           alpha-amylase)
          Length = 427

 Score = 31.6 bits (70), Expect = 0.85
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 339 IGWWAVRKVVYLDNWKTGYSIHTFWP 262
           IGWW  + V ++DN  TG + H  WP
Sbjct: 298 IGWWPAKAVTFVDNHDTGSTQH-MWP 322



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>AMY4_HORVU (P04748) Alpha-amylase type B isozyme (EC 3.2.1.1)|
           (1,4-alpha-D-glucan glucanohydrolase) (Clone 103)
           (Fragment)
          Length = 153

 Score = 31.6 bits (70), Expect = 0.85
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 339 IGWWAVRKVVYLDNWKTGYSIHTFWP 262
           IGWW  + V ++DN  TG + H  WP
Sbjct: 24  IGWWPAKAVTFVDNHDTGSTQH-MWP 48



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>AMC2_ORYSA (P27941) Alpha-amylase isozyme C2 precursor (EC 3.2.1.1)|
           (1,4-alpha-D-glucan glucanohydrolase)
          Length = 445

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 339 IGWWAVRKVVYLDNWKTGYSIHTFWP 262
           IGWW  + V ++DN  TG S    WP
Sbjct: 299 IGWWPAKAVTFVDNHDTG-STQQMWP 323



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>AM2A_ORYSA (P27935) Alpha-amylase isozyme 2A precursor (EC 3.2.1.1)|
           (1,4-alpha-D-glucan glucanohydrolase)
          Length = 445

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 339 IGWWAVRKVVYLDNWKTGYSIHTFWP 262
           IGWW  + V ++DN  TG S    WP
Sbjct: 299 IGWWPAKAVTFVDNHDTG-STQQMWP 323



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>AMY1_ORYSA (P17654) Alpha-amylase precursor (EC 3.2.1.1) (1,4-alpha-D-glucan|
           glucanohydrolase) (Isozyme 1B)
          Length = 434

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 339 IGWWAVRKVVYLDNWKTGYSIHTFWP 262
           IGWW  +   ++DN  TG + H  WP
Sbjct: 305 IGWWPAKATTFVDNHDTGSTQH-LWP 329



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>G3OX2_ARATH (Q9ZT84) Gibberellin 3-beta-dioxygenase 2 (EC 1.14.11.15)|
           (Gibberellin 3 beta-hydroxylase 2) (GA 3-oxidase 2)
           (AtGA3ox2)
          Length = 347

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +1

Query: 298 VIQVNHLPDCPPPDR 342
           VIQ+NH P CP PDR
Sbjct: 204 VIQLNHYPKCPEPDR 218



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>ZN161_HUMAN (Q14119) Zinc finger protein 161 (Putative transcription factor|
           DB1)
          Length = 516

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 14/52 (26%), Positives = 20/52 (38%)
 Frame = +1

Query: 259 TRPEGMNAVPSLPVIQVNHLPDCPPPDRHDCQHCKSLCLQALHLHQQVCDHS 414
           T P    +  ++PV Q    P  P    H C+ C        HL++    HS
Sbjct: 146 TNPSSSASTTAMPVTQSVKKPSKPVKKNHACEMCGKAFRDVYHLNRHKLSHS 197



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>UDG_RHIME (O54068) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc|
           dehydrogenase) (UDP-GlcDH) (UDPGDH)
          Length = 437

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 13/47 (27%), Positives = 28/47 (59%)
 Frame = -1

Query: 302 ITGRLGTAFIPSGRVAGGKCCPNRPSMLLSFVAEDVESSIQIDHTEI 162
           + GR+G+ F+ +G   GG C P + ++ L   A+D ++ +++  T +
Sbjct: 246 LDGRIGSKFLHAGPGYGGSCFP-KDTLALVKTAQDHDTPVRLVETTV 291



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>BLK_HUMAN (P51451) Tyrosine-protein kinase BLK (EC 2.7.10.2) (B lymphocyte|
           kinase) (p55-BLK)
          Length = 504

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +1

Query: 193 STSSATKERSIDGR-LGQHLPPATRPEGMNAVPSLPVIQVNHLPDCPPPDRH 345
           S+    KE+ I  +  GQ  P     +  +A P  P++  NHL   PPPD H
Sbjct: 4   SSKKPDKEKPIKEKDKGQWSPLKVSAQDKDAPPLPPLVVFNHLTP-PPPDEH 54



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>AMY1_HORVU (P00693) Alpha-amylase type A isozyme precursor (EC 3.2.1.1)|
           (1,4-alpha-D-glucan glucanohydrolase) (AMY1) (Low pI
           alpha-amylase)
          Length = 438

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 339 IGWWAVRKVVYLDNWKTGYSIHTFWP 262
           +GWW  +   ++DN  TG S    WP
Sbjct: 300 MGWWPAKAATFVDNHDTG-STQAMWP 324



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>FA12_CAVPO (Q04962) Coagulation factor XII precursor (EC 3.4.21.38) (Hageman|
           factor) (HAF) [Contains: Coagulation factor XIIa heavy
           chain; Coagulation factor XIIa light chain] (Fragment)
          Length = 603

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = +1

Query: 337 DRHD--CQHCKSLCLQALHLHQQVCDHSY 417
           DRH+  C+HC++L + +  LH+     SY
Sbjct: 416 DRHNQSCEHCQTLAVHSYRLHEAFSPSSY 444



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>PTN23_RAT (O88902) Tyrosine-protein phosphatase non-receptor type 23 (EC|
            3.1.3.48) (His-domain-containing protein tyrosine
            phosphatase) (HD-PTP) (Protein tyrosine phosphatase TD14)
            (PTP-TD14) (Fragment)
          Length = 1499

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +1

Query: 247  LPPATRPEGMNAVPSLPVIQVNHLPDCPPPD 339
            LPPA+ PE   A PS P    + LP+ P P+
Sbjct: 1392 LPPASLPEPTPAPPSSPPPPSSPLPEPPQPE 1422



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>BAT2_RAT (Q6MG48) Large proline-rich protein BAT2 (HLA-B-associated|
           transcript 2)
          Length = 2161

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
 Frame = +1

Query: 190 DSTSSATKERSIDGRLG----QHLPPATRPEGMNAVPSLPVIQVNHLPDCPPPDRH 345
           DS S+A +E   DG+ G      LPP       N+ PS        +P  PPP  H
Sbjct: 360 DSQSAAGEEPETDGKKGTSPGSELPPPKTAWTENSRPSETEPAAPPIPKPPPPPPH 415


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,307,935
Number of Sequences: 219361
Number of extensions: 1409741
Number of successful extensions: 3978
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 3822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3976
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2453576370
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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