ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart07g08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY108427.1| Zea mays PCO132322 mRNA sequence 180 2e-42
2gb|BT017829.1| Zea mays clone EL01N0508G07.c mRNA sequence 172 6e-40
3gb|AC016781.6| Oryza sativa (japonica cultivar-group) clone OSJN... 151 2e-33
4gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 151 2e-33
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 151 2e-33
6dbj|AK109347.2| Oryza sativa (japonica cultivar-group) cDNA clon... 151 2e-33
7dbj|AK102421.1| Oryza sativa (japonica cultivar-group) cDNA clon... 151 2e-33
8dbj|AK061364.1| Oryza sativa (japonica cultivar-group) cDNA clon... 151 2e-33
9ref|XM_462955.1| Oryza sativa (japonica cultivar-group), predic... 145 1e-31
10ref|NM_104861.1| Arabidopsis thaliana oligosaccharide transporte... 44 0.37
11dbj|AK176101.1| Arabidopsis thaliana mRNA for hypothetical prote... 44 0.37
12gb|AC005882.1|AC005882 Arabidopsis thaliana chromosome I BAC T13... 44 0.37
13gb|AC103975.9| Homo sapiens chromosome 15, clone RP11-1001M11, c... 42 1.5
14gb|AC022748.10| Homo sapiens chromosome 15, clone RP11-160C18, c... 42 1.5
15gb|AC157948.5| Mus musculus BAC clone RP23-197K17 from chromosom... 42 1.5
16gb|AC149283.2| Mus musculus BAC clone RP23-233O21 from 7, comple... 42 1.5
17ref|NM_101029.1| Arabidopsis thaliana oligosaccharide transporte... 40 5.8
18ref|XM_655563.1| Aspergillus nidulans FGSC A4 hypothetical prote... 40 5.8
19gb|AC125331.4| Mus musculus chromosome 7 clone RP23-11L1, comple... 40 5.8
20gb|AC122245.5| Mus musculus BAC clone RP23-151P21 from 18, compl... 40 5.8
21gb|AC122828.3| Mus musculus BAC clone RP23-215B8 from 13, comple... 40 5.8
22gb|AC087237.14| Homo sapiens 12p BAC RP11-405A12 (Roswell Park C... 40 5.8
23emb|BX294025.1|NCB16M17 Neurospora crassa DNA linkage group V BA... 40 5.8
24gb|AC011661.5|AC011661 Genomic sequence for Arabidopsis thaliana... 40 5.8
25emb|AL805923.6| Mouse DNA sequence from clone RP23-65B16 on chro... 40 5.8
26gb|AC159189.2| Mus musculus BAC clone RP24-159L17 from chromosom... 40 5.8 
>gb|AY108427.1| Zea mays PCO132322 mRNA sequence
          Length = 860

 Score =  180 bits (91), Expect = 2e-42
 Identities = 160/183 (87%)
 Strand = Plus / Minus

                                                                       
Query: 249 acctccagctactcggccagaaggtatgaatgctgtacccagtcttccagttatccaggt 308
           |||||||||| |||||  |||||||||||||||| || ||||||||||||||||| | ||
Sbjct: 513 acctccagctgctcgggaagaaggtatgaatgctatagccagtcttccagttatctaagt 454

                                                                       
Query: 309 aaaccaccttcctgactgcccaccacccgatcgccatgactgccagcattgcaaatcgct 368
           | | ||||||||| || ||||||||||||| | ||||||| || ||||| ||||  ||||
Sbjct: 453 agatcaccttcctaacagcccaccacccgaccaccatgacagcgagcatcgcaaggcgct 394

                                                                       
Query: 369 gtgtctgcaggctctccaccttcaccagcaagtgtgtgaccacagctatcatcaggccca 428
           ||||||||||||||||||||||||||| ||||||||| |||||||| ||||| || ||||
Sbjct: 393 gtgtctgcaggctctccaccttcaccaacaagtgtgtcaccacagcgatcatgagaccca 334

              
Query: 429 cga 431
           |||
Sbjct: 333 cga 331
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>gb|BT017829.1| Zea mays clone EL01N0508G07.c mRNA sequence
          Length = 1374

 Score =  172 bits (87), Expect = 6e-40
 Identities = 159/183 (86%)
 Strand = Plus / Minus

                                                                        
Query: 249  acctccagctactcggccagaaggtatgaatgctgtacccagtcttccagttatccaggt 308
            |||||||||| |||||  |||||||||||||||| || ||||||||||||||||| | ||
Sbjct: 1055 acctccagctgctcgggaagaaggtatgaatgctatagccagtcttccagttatctaagt 996

                                                                        
Query: 309  aaaccaccttcctgactgcccaccacccgatcgccatgactgccagcattgcaaatcgct 368
            | | ||||||||| || ||||||||||||| | ||||||| || ||||| ||||  ||||
Sbjct: 995  agatcaccttcctaacagcccaccacccgaccaccatgacagcgagcatcgcaaggcgct 936

                                                                        
Query: 369  gtgtctgcaggctctccaccttcaccagcaagtgtgtgaccacagctatcatcaggccca 428
            | ||||||||||||||||||||||||| ||||||||| |||||||| ||||| || ||||
Sbjct: 935  gcgtctgcaggctctccaccttcaccaacaagtgtgtcaccacagcgatcatgagaccca 876

               
Query: 429  cga 431
            |||
Sbjct: 875  cga 873
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>gb|AC016781.6| Oryza sativa (japonica cultivar-group) clone OSJNBa0084C09, complete
             sequence
          Length = 151269

 Score =  151 bits (76), Expect = 2e-33
 Identities = 160/188 (85%)
 Strand = Plus / Plus

                                                                         
Query: 244   catttacctccagctactcggccagaaggtatgaatgctgtacccagtcttccagttatc 303
             ||||||||||||||| || |||||||||||||||||||| || |||||||||||||||||
Sbjct: 94535 catttacctccagctgctgggccagaaggtatgaatgctatatccagtcttccagttatc 94594

                                                                         
Query: 304   caggtaaaccaccttcctgactgcccaccacccgatcgccatgactgccagcattgcaaa 363
             ||    || ||||||| | |||||||||||||| ||   |||||| |||||||| | |||
Sbjct: 94595 caaaagaatcaccttcttcactgcccaccacccaattatcatgaccgccagcatcgtaaa 94654

                                                                         
Query: 364   tcgctgtgtctgcaggctctccaccttcaccagcaagtgtgtgaccacagctatcatcag 423
              |||||  ||||||||||||||||| |||||||||||||||| ||||  || ||||| ||
Sbjct: 94655 acgctggatctgcaggctctccaccctcaccagcaagtgtgtcaccatggcgatcatgag 94714

                     
Query: 424   gcccacga 431
              |||||||
Sbjct: 94715 ccccacga 94722
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  151 bits (76), Expect = 2e-33
 Identities = 160/188 (85%)
 Strand = Plus / Plus

                                                                            
Query: 244      catttacctccagctactcggccagaaggtatgaatgctgtacccagtcttccagttatc 303
                ||||||||||||||| || |||||||||||||||||||| || |||||||||||||||||
Sbjct: 20176451 catttacctccagctgctgggccagaaggtatgaatgctatatccagtcttccagttatc 20176510

                                                                            
Query: 304      caggtaaaccaccttcctgactgcccaccacccgatcgccatgactgccagcattgcaaa 363
                ||    || ||||||| | |||||||||||||| ||   |||||| |||||||| | |||
Sbjct: 20176511 caaaagaatcaccttcttcactgcccaccacccaattatcatgaccgccagcatcgtaaa 20176570

                                                                            
Query: 364      tcgctgtgtctgcaggctctccaccttcaccagcaagtgtgtgaccacagctatcatcag 423
                 |||||  ||||||||||||||||| |||||||||||||||| ||||  || ||||| ||
Sbjct: 20176571 acgctggatctgcaggctctccaccctcaccagcaagtgtgtcaccatggcgatcatgag 20176630

                        
Query: 424      gcccacga 431
                 |||||||
Sbjct: 20176631 ccccacga 20176638
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  151 bits (76), Expect = 2e-33
 Identities = 160/188 (85%)
 Strand = Plus / Plus

                                                                            
Query: 244      catttacctccagctactcggccagaaggtatgaatgctgtacccagtcttccagttatc 303
                ||||||||||||||| || |||||||||||||||||||| || |||||||||||||||||
Sbjct: 20169478 catttacctccagctgctgggccagaaggtatgaatgctatatccagtcttccagttatc 20169537

                                                                            
Query: 304      caggtaaaccaccttcctgactgcccaccacccgatcgccatgactgccagcattgcaaa 363
                ||    || ||||||| | |||||||||||||| ||   |||||| |||||||| | |||
Sbjct: 20169538 caaaagaatcaccttcttcactgcccaccacccaattatcatgaccgccagcatcgtaaa 20169597

                                                                            
Query: 364      tcgctgtgtctgcaggctctccaccttcaccagcaagtgtgtgaccacagctatcatcag 423
                 |||||  ||||||||||||||||| |||||||||||||||| ||||  || ||||| ||
Sbjct: 20169598 acgctggatctgcaggctctccaccctcaccagcaagtgtgtcaccatggcgatcatgag 20169657

                        
Query: 424      gcccacga 431
                 |||||||
Sbjct: 20169658 ccccacga 20169665
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>dbj|AK109347.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-G06, full
            insert sequence
          Length = 1273

 Score =  151 bits (76), Expect = 2e-33
 Identities = 160/188 (85%)
 Strand = Plus / Minus

                                                                        
Query: 244  catttacctccagctactcggccagaaggtatgaatgctgtacccagtcttccagttatc 303
            ||||||||||||||| || |||||||||||||||||||| || |||||||||||||||||
Sbjct: 1032 catttacctccagctgctgggccagaaggtatgaatgctatatccagtcttccagttatc 973

                                                                        
Query: 304  caggtaaaccaccttcctgactgcccaccacccgatcgccatgactgccagcattgcaaa 363
            ||    || ||||||| | |||||||||||||| ||   |||||| |||||||| | |||
Sbjct: 972  caaaagaatcaccttcttcactgcccaccacccaattatcatgaccgccagcatcgtaaa 913

                                                                        
Query: 364  tcgctgtgtctgcaggctctccaccttcaccagcaagtgtgtgaccacagctatcatcag 423
             |||||  ||||||||||||||||| |||||||||||||||| ||||  || ||||| ||
Sbjct: 912  acgctggatctgcaggctctccaccctcaccagcaagtgtgtcaccatggcgatcatgag 853

                    
Query: 424  gcccacga 431
             |||||||
Sbjct: 852  ccccacga 845
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>dbj|AK102421.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033093D18, full
            insert sequence
          Length = 1398

 Score =  151 bits (76), Expect = 2e-33
 Identities = 160/188 (85%)
 Strand = Plus / Minus

                                                                        
Query: 244  catttacctccagctactcggccagaaggtatgaatgctgtacccagtcttccagttatc 303
            ||||||||||||||| || |||||||||||||||||||| || |||||||||||||||||
Sbjct: 1052 catttacctccagctgctgggccagaaggtatgaatgctatatccagtcttccagttatc 993

                                                                        
Query: 304  caggtaaaccaccttcctgactgcccaccacccgatcgccatgactgccagcattgcaaa 363
            ||    || ||||||| | |||||||||||||| ||   |||||| |||||||| | |||
Sbjct: 992  caaaagaatcaccttcttcactgcccaccacccaattatcatgaccgccagcatcgtaaa 933

                                                                        
Query: 364  tcgctgtgtctgcaggctctccaccttcaccagcaagtgtgtgaccacagctatcatcag 423
             |||||  ||||||||||||||||| |||||||||||||||| ||||  || ||||| ||
Sbjct: 932  acgctggatctgcaggctctccaccctcaccagcaagtgtgtcaccatggcgatcatgag 873

                    
Query: 424  gcccacga 431
             |||||||
Sbjct: 872  ccccacga 865
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>dbj|AK061364.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-D03, full
            insert sequence
          Length = 1328

 Score =  151 bits (76), Expect = 2e-33
 Identities = 160/188 (85%)
 Strand = Plus / Minus

                                                                        
Query: 244  catttacctccagctactcggccagaaggtatgaatgctgtacccagtcttccagttatc 303
            ||||||||||||||| || |||||||||||||||||||| || |||||||||||||||||
Sbjct: 1047 catttacctccagctgctgggccagaaggtatgaatgctatatccagtcttccagttatc 988

                                                                        
Query: 304  caggtaaaccaccttcctgactgcccaccacccgatcgccatgactgccagcattgcaaa 363
            ||    || ||||||| | |||||||||||||| ||   |||||| |||||||| | |||
Sbjct: 987  caaaagaatcaccttcttcactgcccaccacccaattatcatgaccgccagcatcgtaaa 928

                                                                        
Query: 364  tcgctgtgtctgcaggctctccaccttcaccagcaagtgtgtgaccacagctatcatcag 423
             |||||  ||||||||||||||||| |||||||||||||||| ||||  || ||||| ||
Sbjct: 927  acgctggatctgcaggctctccaccctcaccagcaagtgtgtcaccatggcgatcatgag 868

                    
Query: 424  gcccacga 431
             |||||||
Sbjct: 867  ccccacga 860
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>ref|XM_462955.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1011

 Score =  145 bits (73), Expect = 1e-31
 Identities = 157/185 (84%)
 Strand = Plus / Minus

                                                                        
Query: 247  ttacctccagctactcggccagaaggtatgaatgctgtacccagtcttccagttatccag 306
            |||||||||||| || |||||||||||||||||||| || ||||||||||||||||||| 
Sbjct: 1011 ttacctccagctgctgggccagaaggtatgaatgctatatccagtcttccagttatccaa 952

                                                                        
Query: 307  gtaaaccaccttcctgactgcccaccacccgatcgccatgactgccagcattgcaaatcg 366
               || ||||||| | |||||||||||||| ||   |||||| |||||||| | ||| ||
Sbjct: 951  aagaatcaccttcttcactgcccaccacccaattatcatgaccgccagcatcgtaaaacg 892

                                                                        
Query: 367  ctgtgtctgcaggctctccaccttcaccagcaagtgtgtgaccacagctatcatcaggcc 426
            |||  ||||||||||||||||| |||||||||||||||| ||||  || ||||| || ||
Sbjct: 891  ctggatctgcaggctctccaccctcaccagcaagtgtgtcaccatggcgatcatgagccc 832

                 
Query: 427  cacga 431
            |||||
Sbjct: 831  cacga 827
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>ref|NM_104861.1| Arabidopsis thaliana oligosaccharide transporter AT1G61790 mRNA,
            complete cds
          Length = 1041

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 287  ccagtcttccagttatccaggtaaac 312
            ||||||||||||||||||| ||||||
Sbjct: 1001 ccagtcttccagttatccaagtaaac 976
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>dbj|AK176101.1| Arabidopsis thaliana mRNA for hypothetical protein, partial cds,
           clone: RAFL22-88-K11
          Length = 345

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 287 ccagtcttccagttatccaggtaaac 312
           ||||||||||||||||||| ||||||
Sbjct: 77  ccagtcttccagttatccaagtaaac 52
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>gb|AC005882.1|AC005882 Arabidopsis thaliana chromosome I BAC T13M11 genomic sequence, complete
             sequence
          Length = 87394

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 287   ccagtcttccagttatccaggtaaac 312
             ||||||||||||||||||| ||||||
Sbjct: 67285 ccagtcttccagttatccaagtaaac 67260
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>gb|AC103975.9| Homo sapiens chromosome 15, clone RP11-1001M11, complete sequence
          Length = 213676

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 309   aaaccaccttcctgactgccc 329
             |||||||||||||||||||||
Sbjct: 22849 aaaccaccttcctgactgccc 22869
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>gb|AC022748.10| Homo sapiens chromosome 15, clone RP11-160C18, complete sequence
          Length = 163642

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 309    aaaccaccttcctgactgccc 329
              |||||||||||||||||||||
Sbjct: 120526 aaaccaccttcctgactgccc 120506
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>gb|AC157948.5| Mus musculus BAC clone RP23-197K17 from chromosome 7, complete
            sequence
          Length = 201846

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 379  gctctccaccttcaccagcaagtgt 403
            |||||| ||||||||||||||||||
Sbjct: 2447 gctctctaccttcaccagcaagtgt 2423
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>gb|AC149283.2| Mus musculus BAC clone RP23-233O21 from 7, complete sequence
          Length = 223763

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 379    gctctccaccttcaccagcaagtgt 403
              |||||| ||||||||||||||||||
Sbjct: 197849 gctctctaccttcaccagcaagtgt 197873
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>ref|NM_101029.1| Arabidopsis thaliana oligosaccharide transporter AT1G11560 mRNA,
           complete cds
          Length = 1032

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                       
Query: 287 ccagtcttccagttatccaggtaaaccaccttcctgactgccca 330
           ||||||||||| ||||||| |||||| || ||||| || |||||
Sbjct: 989 ccagtcttccaattatccaagtaaacaactttcctcacagccca 946
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>ref|XM_655563.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN3051.2), mRNA
          Length = 2367

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 68   ataaaatgactcggttctct 87
            ||||||||||||||||||||
Sbjct: 1584 ataaaatgactcggttctct 1565
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>gb|AC125331.4| Mus musculus chromosome 7 clone RP23-11L1, complete sequence
          Length = 255921

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 312    ccaccttcctgactgcccac 331
              ||||||||||||||||||||
Sbjct: 121813 ccaccttcctgactgcccac 121832
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>gb|AC122245.5| Mus musculus BAC clone RP23-151P21 from 18, complete sequence
          Length = 191988

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 200    cctctgcaacaaaggaaaga 219
              ||||||||||||||||||||
Sbjct: 146179 cctctgcaacaaaggaaaga 146160
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>gb|AC122828.3| Mus musculus BAC clone RP23-215B8 from 13, complete sequence
          Length = 198604

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 204    tgcaacaaaggaaagaagca 223
              ||||||||||||||||||||
Sbjct: 129467 tgcaacaaaggaaagaagca 129448
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>gb|AC087237.14| Homo sapiens 12p BAC RP11-405A12 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 166380

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 393    ccagcaagtgtgtgaccacagcta 416
              ||||||||||||| ||||||||||
Sbjct: 112713 ccagcaagtgtgtcaccacagcta 112736
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>emb|BX294025.1|NCB16M17 Neurospora crassa DNA linkage group V BAC clone B16M17
          Length = 78402

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 350   gccagcattgcaaatcgctgtgtc 373
             ||||||||||||| ||||||||||
Sbjct: 44258 gccagcattgcaagtcgctgtgtc 44281
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>gb|AC011661.5|AC011661 Genomic sequence for Arabidopsis thaliana BAC T23J18 from chromosome I,
             complete sequence
          Length = 84797

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                         
Query: 287   ccagtcttccagttatccaggtaaaccaccttcctgactgccca 330
             ||||||||||| ||||||| |||||| || ||||| || |||||
Sbjct: 67360 ccagtcttccaattatccaagtaaacaactttcctcacagccca 67317
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>emb|AL805923.6| Mouse DNA sequence from clone RP23-65B16 on chromosome 4, complete
              sequence
          Length = 182774

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 409    cacagctatcatcaggccca 428
              ||||||||||||||||||||
Sbjct: 100630 cacagctatcatcaggccca 100611
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>gb|AC159189.2| Mus musculus BAC clone RP24-159L17 from chromosome 6, complete sequence
          Length = 160884

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 410    acagctatcatcaggcccac 429
              ||||||||||||||||||||
Sbjct: 109099 acagctatcatcaggcccac 109080


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,870,709
Number of Sequences: 3902068
Number of extensions: 3870709
Number of successful extensions: 64067
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63991
Number of HSP's gapped (non-prelim): 69
length of query: 431
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 409
effective length of database: 17,147,199,772
effective search space: 7013204706748
effective search space used: 7013204706748
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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