>DYHB_CHLRE (Q39565) Dynein beta chain, flagellar outer arm|
          Length = 4568

 Score = 32.3 bits (72), Expect = 0.62
 Identities = 22/67 (32%), Positives = 31/67 (46%)
 Frame = +3

Query: 261  KIRLAQSGKREGKTCRNYVCNQRXXXXXXXXXXXXCLFLRCALDACFIPLIRSQRSSSGT 440
            ++R  QS K   KTC+  +C+              CL +    D CFI L ++QR   G 
Sbjct: 1858 QLRYIQSEKT--KTCQVNICDAEIAYSYEYIGNCGCLCITPLTDRCFITLTQAQRLVLGG 1915

Query: 441  SPYARPA 461
            +P A PA
Sbjct: 1916 AP-AGPA 1921

>SYI_BORPE (Q7VXK3) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 953

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +2

Query: 116 GNYLPVSKACARARVYY--HITRXRKNFICLHALTCSLNRYICRKFDKDA 259
           G +LPV++  ++AR Y    I R RK+F  L  L    N Y+   F  +A
Sbjct: 110 GKHLPVTEVQSKARAYALEQIDRQRKDFKRLGVLGDWHNPYLTMNFSNEA 159

>SYI_BORPA (Q7W8Z2) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 953

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +2

Query: 116 GNYLPVSKACARARVYY--HITRXRKNFICLHALTCSLNRYICRKFDKDA 259
           G +LPV++  ++AR Y    I R RK+F  L  L    N Y+   F  +A
Sbjct: 110 GKHLPVTEVQSKARAYALEQIDRQRKDFKRLGVLGDWHNPYLTMNFSNEA 159

>SYI_BORBR (Q7WKD5) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 953

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +2

Query: 116 GNYLPVSKACARARVYY--HITRXRKNFICLHALTCSLNRYICRKFDKDA 259
           G +LPV++  ++AR Y    I R RK+F  L  L    N Y+   F  +A
Sbjct: 110 GKHLPVTEVQSKARAYALEQIDRQRKDFKRLGVLGDWHNPYLTMNFSNEA 159

>NH121_CAEEL (Q9TZ99) Nuclear hormone receptor family member nhr-121|
          Length = 461

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
 Frame = +2

Query: 116 GNYLPVSKACARARVYYHITRXRKNFICLHALTCSLN---RYICR 241
           G +   +   A A  +       +NF+C H  TC +N   R ICR
Sbjct: 31  GYHFNAASCSACAAFFRRTVTLNRNFVCTHQNTCRVNYAMRVICR 75


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,767,177
Number of Sequences: 219361
Number of extensions: 1262846
Number of successful extensions: 2878
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2874
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 3026354448
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)