>BSC2_YEAST (Q05611) Bypass of stop codon protein 2|
          Length = 235

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
 Frame = -2

Query: 172 RILSL*WHCAYTKE---GL-VMY*I--LLCFINVISVLYTHLILSMRDCFDVLC 29
           ++LSL WHC    E   GL +M+ I  L+C + VI +L   +IL   D F  +C
Sbjct: 46  KVLSLTWHCGILSEIRSGLMLMFGIFQLMCSLGVIVLLLPIIILDAIDLFLYMC 99

>LAP1_DROME (Q9V780) Protein lap1|
          Length = 849

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = -1

Query: 332 TLFMLPLPLTRLNDRPEVHPVMNVYVFMYALQRAQHENSGGRLCVA 195
           T FMLP    ++N           Y F+YA Q+  H +   R+C A
Sbjct: 415 TCFMLPQVTFKMNSIQAQQQAQEQYEFVYANQQQPHASPSRRICFA 460

>GLND_PASMU (Q9CNH1) [Protein-PII] uridylyltransferase (EC 2.7.7.59) (PII|
           uridylyl-transferase) (Uridylyl-removing enzyme) (UTase)
          Length = 864

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 18/69 (26%), Positives = 28/69 (40%)
 Frame = +3

Query: 231 RSLQGIHKYIYIHNWMDLRSIVKACERQWQHEQGCSTLDKFSCVECPRLCHATTIXVDLP 410
           R+L  +HKY           ++KA   QW H +G    D F C       H     + L 
Sbjct: 411 RALVPMHKY----------GVLKAYLPQWHHIEGLMQFDLFHCYTVDE--HIVRTLLKLE 458

Query: 411 YMVSSSNIV 437
           Y + + ++V
Sbjct: 459 YFLEAESVV 467

>SRA34_CAEEL (Q10936) Serpentine receptor class alpha-34 (Protein sra-34)|
          Length = 355

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 27/115 (23%), Positives = 58/115 (50%), Gaps = 14/115 (12%)
 Frame = +3

Query: 165 SILIYSMLESCNTKPSSTILML---RSLQGIHKYIY--IHNWMDLRSIVKACERQWQHEQ 329
           ++++   L + +  P+ST+++L    ++  IH+++Y  I NW  LRS+V      W  +Q
Sbjct: 43  TVVVLRKLYTKSIFPNSTLVLLVASLAVGSIHEFLYGFIQNWSLLRSLV-----YW--DQ 95

Query: 330 GCSTL-DKFSC-------VECPRLCHATTIXVDLPYMVSSSNI-VESTSPRANAL 467
            C  + +++ C       +    L   T   + +  +++ SN+ ++ST+ R   L
Sbjct: 96  PCKIMFNEYECYPFYTANIFIRLLMICTNCAITIDRLITLSNVGIKSTAQRGIVL 150


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,864,357
Number of Sequences: 219361
Number of extensions: 1455599
Number of successful extensions: 3575
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3575
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3523384522
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)