ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart07e11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AJ234677.1|HVU234677 Hordeum vulgare genomic DNA fragment; c... 280 4e-72
2emb|AJ234678.1|HVU234678 Hordeum vulgare genomic DNA fragment; c... 242 9e-61
3gb|AY644645.1| Oryza sativa (indica cultivar-group) putative nuc... 92 2e-15
4ref|XM_480492.1| Oryza sativa (japonica cultivar-group), mRNA 84 5e-13
5dbj|AK103422.1| Oryza sativa (japonica cultivar-group) cDNA clon... 84 5e-13
6dbj|AK059471.1| Oryza sativa (japonica cultivar-group) cDNA clon... 84 5e-13
7ref|XM_473923.1| Oryza sativa (japonica cultivar-group), predic... 70 7e-09
8dbj|AK103446.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 7e-09
9dbj|AK063918.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 7e-09
10dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 60 7e-06
11dbj|AP005441.3| Oryza sativa (japonica cultivar-group) genomic D... 60 7e-06
12emb|BX842653.1| Bdellovibrio bacteriovorus complete genome, stra... 50 0.007
13emb|AL662970.2|OSJN00174 Oryza sativa genomic DNA, chromosome 4,... 50 0.007
14dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.007
15ref|XM_748256.1| Aspergillus fumigatus Af293 hypothetical protei... 44 0.41
16gb|AC139190.1| Pan troglodytes BAC clone RP43-12I19 from Y, comp... 44 0.41
17emb|AJ344214.2|YEN344214 Yersinia enterocolitica (type 0:8) yts1... 44 0.41
18dbj|BS000551.1| Pan troglodytes chromosome Y clone:PTB-295A05, c... 44 0.41
19gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 44 0.41
20emb|AL824703.12| Mouse DNA sequence from clone RP23-317M2 on chr... 44 0.41
21emb|BX294103.11| Zebrafish DNA sequence from clone CH211-257A8 i... 44 0.41
22gb|AC123695.10| Mus musculus chromosome 15, clone RP23-328C23, c... 42 1.6
23gb|AC069559.27| Mus musculus strain C57BL/6J clone rp23-136j2 ma... 42 1.6
24gb|AC160125.2| Mus musculus BAC clone RP23-317M11 from chromosom... 42 1.6
25emb|AL592217.6| Human DNA sequence from clone RP11-621E22 on chr... 42 1.6
26emb|AL606660.3|OSJN00111 Oryza sativa genomic DNA, chromosome 4,... 42 1.6
27gb|AC079822.13| Homo sapiens 3 BAC RP11-413G22 (Roswell Park Can... 42 1.6
28gb|AC009385.8| Drosophila melanogaster 3L BAC RP98-23M20 (Roswel... 42 1.6
29gb|AC009380.6| Drosophila melanogaster 3L BAC RP98-17L5 (Roswell... 42 1.6
30ref|NM_140792.1| Drosophila melanogaster MYPT-75D CG6896-RA (MYP... 42 1.6
31gb|AY075426.1| Drosophila melanogaster LD46604 full length cDNA 42 1.6
32gb|AC106044.5| Homo sapiens BAC clone RP11-25J10 from 2, complet... 42 1.6
33gb|BT024069.1| Zea mays clone EL01N0450D06 mRNA sequence 42 1.6
34gb|AE003519.3| Drosophila melanogaster chromosome 3L, section 66... 42 1.6
35gb|AC159965.5| Mus musculus chromosome 15, clone RP23-471C16, co... 42 1.6
36emb|AL732449.5| Mouse DNA sequence from clone RP23-191F11 on chr... 42 1.6
37gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome 40 6.3
38gb|AC091295.4| Mus musculus strain C57BL6/J chromosome 6 clone R... 40 6.3
39gb|AC158936.4| Mus musculus chromosome 3, clone RP23-235P13, com... 40 6.3
40gb|AC135239.3| Mus musculus BAC clone RP23-324D2 from chromosome... 40 6.3
41gb|AC158625.9| Mus musculus 6 BAC RP23-78J15 (Roswell Park Cance... 40 6.3
42gb|AC004903.2| Homo sapiens PAC clone RP5-828B12 from 7, complet... 40 6.3
43gb|AC104884.10| Mus musculus chromosome 3, clone RP24-281E9, com... 40 6.3
44ref|XM_499995.1| Yarrowia lipolytica CLIB122, YALI0A11869g predi... 40 6.3
45emb|CR859732.1| Pongo pygmaeus mRNA; cDNA DKFZp468I108 (from clo... 40 6.3
46gb|AC025835.7| Homo sapiens chromosome 18, clone RP11-185H18, co... 40 6.3
47gb|AC027104.6| Homo sapiens chromosome 15, clone RP11-326L17, co... 40 6.3
48gb|AC079052.4| Homo sapiens chromosome 18, clone RP11-142I20, co... 40 6.3
49gb|AC144670.1| Homo sapiens chromosome 8, clone XXfos-85539D6, c... 40 6.3
50gb|AC087456.3| Homo sapiens chromosome 15, clone RP11-26A13, com... 40 6.3
51emb|BX537118.12| Zebrafish DNA sequence from clone CH211-202N8, ... 40 6.3
52ref|XM_626264.1| Cryptosporidium parvum Iowa II hypothetical pro... 40 6.3
53gb|AC121769.4| Mus musculus BAC clone RP23-340N4 from chromosome... 40 6.3
54gb|AC084559.1|CBRG35L02 Caenorhabditis briggsae cosmid G35L02, c... 40 6.3
55gb|CP000084.1| Candidatus Pelagibacter ubique HTCC1062, complete... 40 6.3
56dbj|AP006545.1| Homo sapiens genomic DNA, chromosome 8p11.21, cl... 40 6.3
57gb|AC152923.2| Mus musculus BAC clone RP24-267O6 from 5, complet... 40 6.3
58emb|CR382127.1| Yarrowia lipolytica chromosome A of strain CLIB1... 40 6.3
59emb|AL844871.11| Mouse DNA sequence from clone RP23-271B15 on ch... 40 6.3
60emb|AL772236.11| Mouse DNA sequence from clone RP23-98F14 on chr... 40 6.3
61dbj|AB022785.1| Homo sapiens ASH2L gene, complete cds, similar t... 40 6.3
62dbj|AB020982.1| Homo sapiens ASH2L mRNA, complete cds, similar t... 40 6.3
63dbj|AP000065.1| Homo sapiens genomic DNA, chromosome 8p11.2, sen... 40 6.3 
>emb|AJ234677.1|HVU234677 Hordeum vulgare genomic DNA fragment; clone MWG0957.uni
          Length = 345

 Score =  280 bits (141), Expect = 4e-72
 Identities = 144/145 (99%)
 Strand = Plus / Minus

                                                                       
Query: 325 ttctttcctgcgctagctgtaccagcactctgcctgctctgatagcctcggccacctcct 384
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 ttcttacctgcgctagctgtaccagcactctgcctgctctgatagcctcggccacctcct 280

                                                                       
Query: 385 ctaccaccatctcggccaccagatcggccaaacctgccaccgccatcacggccacctgac 444
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 ctaccaccatctcggccaccagatcggccaaacctgccaccgccatcacggccacctgac 220

                                    
Query: 445 cggccaaacctgccgccgccatcac 469
           |||||||||||||||||||||||||
Sbjct: 219 cggccaaacctgccgccgccatcac 195



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 65/75 (86%)
 Strand = Plus / Minus

                                                                       
Query: 391 ccatctcggccaccagatcggccaaacctgccaccgccatcacggccacctgaccggcca 450
           ||||| |||||||| || |||||||||||||| ||||||||||| ||||| || ||| | 
Sbjct: 237 ccatcacggccacctgaccggccaaacctgccgccgccatcacgaccaccagatcggscg 178

                          
Query: 451 aacctgccgccgcca 465
           |||||||| ||||||
Sbjct: 177 aacctgccaccgcca 163



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                             
Query: 391 ccatctcggccaccagatcggccaaacctgccaccgccatcacggccacc 440
           ||||| || |||||||||||| | |||||||||||||||  |||||||||
Sbjct: 201 ccatcacgaccaccagatcggscgaacctgccaccgccagaacggccacc 152
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>emb|AJ234678.1|HVU234678 Hordeum vulgare genomic DNA fragment; clone MWG0957.rev
          Length = 411

 Score =  242 bits (122), Expect = 9e-61
 Identities = 130/133 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagccagcaattgcactgaagtaatattgattggctattttttgggaaataattgttttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 gagccagcaattgcactgaagtaatattgattggctattttttgggaaataattgttttc 338

                                                                       
Query: 61  agacgactaccgcatacacttctacttttggatacttggatggagaagtagcanaaaaaa 120
           |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 339 agacgactacagcatacacttctacttttggatacttggatggagaagtagcaaaaaaaa 398

                        
Query: 121 tagaactagcgga 133
           |||| ||||||||
Sbjct: 399 tagacctagcgga 411
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>gb|AY644645.1| Oryza sativa (indica cultivar-group) putative nucleolin (NUC) mRNA,
            complete cds
          Length = 2039

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 84/96 (87%), Gaps = 3/96 (3%)
 Strand = Plus / Minus

                                                                        
Query: 313  ccaaatgttgtcttctttcctgcgctagctgtaccagcactctgcctgctctgata---g 369
            ||||| ||||||||||||||||  |||||||||||||||||||||||||||||| |   |
Sbjct: 1726 ccaaaagttgtcttctttcctgtactagctgtaccagcactctgcctgctctgaaaaccg 1667

                                                
Query: 370  cctcggccacctcctctaccaccatctcggccacca 405
            ||||| || |||| ||| |||||||||| |||||||
Sbjct: 1666 cctcgtccgcctcttctgccaccatctctgccacca 1631
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>ref|XM_480492.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2090

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 51/54 (94%)
 Strand = Plus / Minus

                                                                  
Query: 313  ccaaatgttgtcttctttcctgcgctagctgtaccagcactctgcctgctctga 366
            ||||| ||||||||||||||||  ||||||||||||||||||||||||||||||
Sbjct: 1813 ccaaaagttgtcttctttcctgtactagctgtaccagcactctgcctgctctga 1760
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>dbj|AK103422.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033128K11, full
            insert sequence
          Length = 2089

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 51/54 (94%)
 Strand = Plus / Minus

                                                                  
Query: 313  ccaaatgttgtcttctttcctgcgctagctgtaccagcactctgcctgctctga 366
            ||||| ||||||||||||||||  ||||||||||||||||||||||||||||||
Sbjct: 1812 ccaaaagttgtcttctttcctgtactagctgtaccagcactctgcctgctctga 1759
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>dbj|AK059471.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-028-E02, full
           insert sequence
          Length = 1160

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 51/54 (94%)
 Strand = Plus / Minus

                                                                 
Query: 313 ccaaatgttgtcttctttcctgcgctagctgtaccagcactctgcctgctctga 366
           ||||| ||||||||||||||||  ||||||||||||||||||||||||||||||
Sbjct: 943 ccaaaagttgtcttctttcctgtactagctgtaccagcactctgcctgctctga 890
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>ref|XM_473923.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2124

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 47/51 (92%)
 Strand = Plus / Minus

                                                               
Query: 307  tcgtcaccaaatgttgtcttctttcctgcgctagctgtaccagcactctgc 357
            |||||||| |||||||||||||||||||| |||| ||||||||| ||||||
Sbjct: 2117 tcgtcaccgaatgttgtcttctttcctgcactaggtgtaccagcgctctgc 2067
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>dbj|AK103446.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033129G11, full
            insert sequence
          Length = 2447

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 47/51 (92%)
 Strand = Plus / Minus

                                                               
Query: 307  tcgtcaccaaatgttgtcttctttcctgcgctagctgtaccagcactctgc 357
            |||||||| |||||||||||||||||||| |||| ||||||||| ||||||
Sbjct: 2259 tcgtcaccgaatgttgtcttctttcctgcactaggtgtaccagcgctctgc 2209
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>dbj|AK063918.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-123-B06, full
            insert sequence
          Length = 1943

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 47/51 (92%)
 Strand = Plus / Minus

                                                               
Query: 307  tcgtcaccaaatgttgtcttctttcctgcgctagctgtaccagcactctgc 357
            |||||||| |||||||||||||||||||| |||| ||||||||| ||||||
Sbjct: 1704 tcgtcaccgaatgttgtcttctttcctgcactaggtgtaccagcgctctgc 1654
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                             
Query: 337     ctagctgtaccagcactctgcctgctctga 366
               ||||||||||||||||||||||||||||||
Sbjct: 5416338 ctagctgtaccagcactctgcctgctctga 5416367
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>dbj|AP005441.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0056O06
          Length = 151038

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                           
Query: 337   ctagctgtaccagcactctgcctgctctga 366
             ||||||||||||||||||||||||||||||
Sbjct: 86149 ctagctgtaccagcactctgcctgctctga 86178
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>emb|BX842653.1| Bdellovibrio bacteriovorus complete genome, strain HD100; segment 8/11
          Length = 347636

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                      
Query: 414   aaacctgccaccgccatcacggcca 438
             |||||||||||||||||||||||||
Sbjct: 17695 aaacctgccaccgccatcacggcca 17671
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>emb|AL662970.2|OSJN00174 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0058K23,
              complete sequence
          Length = 164805

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                           
Query: 307    tcgtcaccaaatgttgtcttctttcctgc 335
              |||||||| ||||||||||||||||||||
Sbjct: 162573 tcgtcaccgaatgttgtcttctttcctgc 162545
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                             
Query: 307      tcgtcaccaaatgttgtcttctttcctgc 335
                |||||||| ||||||||||||||||||||
Sbjct: 31584890 tcgtcaccgaatgttgtcttctttcctgc 31584862



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 307      tcgtcaccaaatgttgtcttctttcctgc 335
                |||||||| ||||| ||||||||||||||
Sbjct: 31593989 tcgtcaccgaatgtcgtcttctttcctgc 31593961
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>ref|XM_748256.1| Aspergillus fumigatus Af293 hypothetical protein (Afu5g13050)
           partial mRNA
          Length = 2334

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 384 tctaccaccatctcggccacca 405
           ||||||||||||||||||||||
Sbjct: 386 tctaccaccatctcggccacca 407
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>gb|AC139190.1| Pan troglodytes BAC clone RP43-12I19 from Y, complete sequence
          Length = 159298

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 192   aaaataccaagaccaatgatactagg 217
             ||||||| ||||||||||||||||||
Sbjct: 58329 aaaatacaaagaccaatgatactagg 58354
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>emb|AJ344214.2|YEN344214 Yersinia enterocolitica (type 0:8) yts1S gene, yts1C gene, yts1D gene,
             yts1E gene, yts1F gene, yts1G gene, yts1H gene, yts1I
             gene, yts1J gene, yts1K gene, yts1L gene, yts1M gene,
             yts1O gene and chiY gene
          Length = 16996

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 409   cggccaaacctgccaccgccatcacggcca 438
             ||||||||||||||||||||| ||| ||||
Sbjct: 10225 cggccaaacctgccaccgccagcaccgcca 10196
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>dbj|BS000551.1| Pan troglodytes chromosome Y clone:PTB-295A05, complete sequences
          Length = 161601

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 192   aaaataccaagaccaatgatactagg 217
             ||||||| ||||||||||||||||||
Sbjct: 11808 aaaatacaaagaccaatgatactagg 11833
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>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                          
Query: 192      aaaataccaagaccaatgatactagg 217
                ||||||| ||||||||||||||||||
Sbjct: 15496075 aaaatacaaagaccaatgatactagg 15496050
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>emb|AL824703.12| Mouse DNA sequence from clone RP23-317M2 on chromosome 4, complete
             sequence
          Length = 80922

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 376   ccacctcctctaccaccatctc 397
             ||||||||||||||||||||||
Sbjct: 53503 ccacctcctctaccaccatctc 53524
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>emb|BX294103.11| Zebrafish DNA sequence from clone CH211-257A8 in linkage group 9,
             complete sequence
          Length = 193969

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 19    aagtaatattgattggctattttttg 44
             ||||| ||||||||||||||||||||
Sbjct: 53554 aagtattattgattggctattttttg 53579
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>gb|AC123695.10| Mus musculus chromosome 15, clone RP23-328C23, complete sequence
          Length = 217334

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 314    caaatgttgtcttctttcctg 334
              |||||||||||||||||||||
Sbjct: 211136 caaatgttgtcttctttcctg 211116
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>gb|AC069559.27| Mus musculus strain C57BL/6J clone rp23-136j2 map 9, complete sequence
          Length = 185365

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 314   caaatgttgtcttctttcctg 334
             |||||||||||||||||||||
Sbjct: 79351 caaatgttgtcttctttcctg 79371
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>gb|AC160125.2| Mus musculus BAC clone RP23-317M11 from chromosome 9, complete sequence
          Length = 209835

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 314    caaatgttgtcttctttcctg 334
              |||||||||||||||||||||
Sbjct: 148680 caaatgttgtcttctttcctg 148660
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>emb|AL592217.6| Human DNA sequence from clone RP11-621E22 on chromosome 6, complete
             sequence
          Length = 72060

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 190   agaaaataccaagaccaatga 210
             |||||||||||||||||||||
Sbjct: 62696 agaaaataccaagaccaatga 62716
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>emb|AL606660.3|OSJN00111 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0085C12,
            complete sequence
          Length = 122721

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 307  tcgtcaccaaatgttgtcttctttcctgc 335
            |||||||| ||||| ||||||||||||||
Sbjct: 8806 tcgtcaccgaatgtcgtcttctttcctgc 8778
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>gb|AC079822.13| Homo sapiens 3 BAC RP11-413G22 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 181672

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 32    tggctattttttgggaaataattgt 56
             |||||||||||||||||| ||||||
Sbjct: 56425 tggctattttttgggaaaaaattgt 56449
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>gb|AC009385.8| Drosophila melanogaster 3L BAC RP98-23M20 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 178628

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 392    catctcggccaccagatcggc 412
              |||||||||||||||||||||
Sbjct: 131972 catctcggccaccagatcggc 131952
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>gb|AC009380.6| Drosophila melanogaster 3L BAC RP98-17L5 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 187973

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 392   catctcggccaccagatcggc 412
             |||||||||||||||||||||
Sbjct: 76303 catctcggccaccagatcggc 76283
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>ref|NM_140792.1| Drosophila melanogaster MYPT-75D CG6896-RA (MYPT-75D), mRNA
          Length = 3973

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 392 catctcggccaccagatcggc 412
           |||||||||||||||||||||
Sbjct: 920 catctcggccaccagatcggc 900
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>gb|AY075426.1| Drosophila melanogaster LD46604 full length cDNA
          Length = 3975

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 392 catctcggccaccagatcggc 412
           |||||||||||||||||||||
Sbjct: 901 catctcggccaccagatcggc 881
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>gb|AC106044.5| Homo sapiens BAC clone RP11-25J10 from 2, complete sequence
          Length = 29400

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 39    tttttgggaaataattgtttt 59
             |||||||||||||||||||||
Sbjct: 21179 tttttgggaaataattgtttt 21159
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>gb|BT024069.1| Zea mays clone EL01N0450D06 mRNA sequence
          Length = 2497

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 310  tcaccaaatgttgtcttctttcctgcgctagctgtaccagc 350
            |||||||| || |||||||||||||  |||||||| |||||
Sbjct: 2348 tcaccaaaggtggtcttctttcctgtactagctgtcccagc 2308
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>gb|AE003519.3| Drosophila melanogaster chromosome 3L, section 66 of 83 of the complete
             sequence
          Length = 294542

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 392   catctcggccaccagatcggc 412
             |||||||||||||||||||||
Sbjct: 36133 catctcggccaccagatcggc 36113
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>gb|AC159965.5| Mus musculus chromosome 15, clone RP23-471C16, complete sequence
          Length = 173156

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 314    caaatgttgtcttctttcctg 334
              |||||||||||||||||||||
Sbjct: 153118 caaatgttgtcttctttcctg 153138
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>emb|AL732449.5| Mouse DNA sequence from clone RP23-191F11 on chromosome X, complete
             sequence
          Length = 160779

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 314   caaatgttgtcttctttcctg 334
             |||||||||||||||||||||
Sbjct: 28749 caaatgttgtcttctttcctg 28729
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>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 393     atctcggccaccagatcggc 412
               ||||||||||||||||||||
Sbjct: 3286600 atctcggccaccagatcggc 3286581
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>gb|AC091295.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-360N5, complete
             sequence
          Length = 111108

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 315   aaatgttgtcttctttcctg 334
             ||||||||||||||||||||
Sbjct: 36723 aaatgttgtcttctttcctg 36742
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>gb|AC158936.4| Mus musculus chromosome 3, clone RP23-235P13, complete sequence
          Length = 160709

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 315    aaatgttgtcttctttcctg 334
              ||||||||||||||||||||
Sbjct: 145510 aaatgttgtcttctttcctg 145529
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>gb|AC135239.3| Mus musculus BAC clone RP23-324D2 from chromosome 3, complete
            sequence
          Length = 190178

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 315  aaatgttgtcttctttcctg 334
            ||||||||||||||||||||
Sbjct: 2418 aaatgttgtcttctttcctg 2437
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>gb|AC158625.9| Mus musculus 6 BAC RP23-78J15 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 246705

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 314    caaatgttgtcttctttcct 333
              ||||||||||||||||||||
Sbjct: 155457 caaatgttgtcttctttcct 155438
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>gb|AC004903.2| Homo sapiens PAC clone RP5-828B12 from 7, complete sequence
          Length = 118869

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 22    taatattgattggctatttt 41
             ||||||||||||||||||||
Sbjct: 69696 taatattgattggctatttt 69715
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>gb|AC104884.10| Mus musculus chromosome 3, clone RP24-281E9, complete sequence
          Length = 168622

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 315   aaatgttgtcttctttcctg 334
             ||||||||||||||||||||
Sbjct: 35762 aaatgttgtcttctttcctg 35743
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>ref|XM_499995.1| Yarrowia lipolytica CLIB122, YALI0A11869g predicted mRNA
          Length = 4290

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 370  cctcggccacctcctctacc 389
            ||||||||||||||||||||
Sbjct: 1625 cctcggccacctcctctacc 1606
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>emb|CR859732.1| Pongo pygmaeus mRNA; cDNA DKFZp468I108 (from clone DKFZp468I108)
          Length = 2768

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 417 cctgccaccgccatcacggccacc 440
           |||||| |||||||||||||||||
Sbjct: 38  cctgccgccgccatcacggccacc 15
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>gb|AC025835.7| Homo sapiens chromosome 18, clone RP11-185H18, complete sequence
          Length = 146399

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 40    ttttgggaaataattgtttt 59
             ||||||||||||||||||||
Sbjct: 17241 ttttgggaaataattgtttt 17222
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>gb|AC027104.6| Homo sapiens chromosome 15, clone RP11-326L17, complete sequence
          Length = 180202

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 41    tttgggaaataattgttttc 60
             ||||||||||||||||||||
Sbjct: 55101 tttgggaaataattgttttc 55082
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>gb|AC079052.4| Homo sapiens chromosome 18, clone RP11-142I20, complete sequence
          Length = 164220

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 40     ttttgggaaataattgtttt 59
              ||||||||||||||||||||
Sbjct: 131788 ttttgggaaataattgtttt 131769
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>gb|AC144670.1| Homo sapiens chromosome 8, clone XXfos-85539D6, complete sequence
          Length = 37413

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 417   cctgccaccgccatcacggccacc 440
             |||||| |||||||||||||||||
Sbjct: 12070 cctgccgccgccatcacggccacc 12093
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>gb|AC087456.3| Homo sapiens chromosome 15, clone RP11-26A13, complete sequence
          Length = 170945

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 41    tttgggaaataattgttttc 60
             ||||||||||||||||||||
Sbjct: 15661 tttgggaaataattgttttc 15680
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>emb|BX537118.12| Zebrafish DNA sequence from clone CH211-202N8, complete sequence
          Length = 197161

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 38     ttttttgggaaataattgtt 57
              ||||||||||||||||||||
Sbjct: 102996 ttttttgggaaataattgtt 102977
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>ref|XM_626264.1| Cryptosporidium parvum Iowa II hypothetical protein (cgd5_3390),
            partial mRNA
          Length = 11130

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 88   ttggatacttggatggagaa 107
            ||||||||||||||||||||
Sbjct: 1531 ttggatacttggatggagaa 1550
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>gb|AC121769.4| Mus musculus BAC clone RP23-340N4 from chromosome 5, complete sequence
          Length = 186413

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 315    aaatgttgtcttctttcctg 334
              ||||||||||||||||||||
Sbjct: 168356 aaatgttgtcttctttcctg 168337
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>gb|AC084559.1|CBRG35L02 Caenorhabditis briggsae cosmid G35L02, complete sequence
          Length = 42112

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 39    tttttgggaaataattgttt 58
             ||||||||||||||||||||
Sbjct: 26280 tttttgggaaataattgttt 26261
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>gb|CP000084.1| Candidatus Pelagibacter ubique HTCC1062, complete genome
          Length = 1308759

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 23    aatattgattggctattttt 42
             ||||||||||||||||||||
Sbjct: 32645 aatattgattggctattttt 32664
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>dbj|AP006545.1| Homo sapiens genomic DNA, chromosome 8p11.21, clone: KB1836B05, complete
              sequence
          Length = 156888

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 417    cctgccaccgccatcacggccacc 440
              |||||| |||||||||||||||||
Sbjct: 146532 cctgccgccgccatcacggccacc 146509
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>gb|AC152923.2| Mus musculus BAC clone RP24-267O6 from 5, complete sequence
          Length = 187438

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 315   aaatgttgtcttctttcctg 334
             ||||||||||||||||||||
Sbjct: 22222 aaatgttgtcttctttcctg 22203
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>emb|CR382127.1| Yarrowia lipolytica chromosome A of strain CLIB122 of Yarrowia lipolytica
          Length = 2303261

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 370     cctcggccacctcctctacc 389
               ||||||||||||||||||||
Sbjct: 1245460 cctcggccacctcctctacc 1245441
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>emb|AL844871.11| Mouse DNA sequence from clone RP23-271B15 on chromosome 2, complete
             sequence
          Length = 179754

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 323   tcttctttcctgcgctagct 342
             ||||||||||||||||||||
Sbjct: 39162 tcttctttcctgcgctagct 39143
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>emb|AL772236.11| Mouse DNA sequence from clone RP23-98F14 on chromosome 4, complete
             sequence
          Length = 207430

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 350   cactctgcctgctctgatag 369
             ||||||||||||||||||||
Sbjct: 53140 cactctgcctgctctgatag 53159
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>dbj|AB022785.1| Homo sapiens ASH2L gene, complete cds, similar to Drosophila ash2
           gene
          Length = 34200

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 417 cctgccaccgccatcacggccacc 440
           |||||| |||||||||||||||||
Sbjct: 106 cctgccgccgccatcacggccacc 83
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>dbj|AB020982.1| Homo sapiens ASH2L mRNA, complete cds, similar to Drosophila ash2
           sequence
          Length = 2368

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 417 cctgccaccgccatcacggccacc 440
           |||||| |||||||||||||||||
Sbjct: 25  cctgccgccgccatcacggccacc 2
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>dbj|AP000065.1| Homo sapiens genomic DNA, chromosome 8p11.2, senescence gene region,
             section 1/19
          Length = 100000

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 417   cctgccaccgccatcacggccacc 440
             |||||| |||||||||||||||||
Sbjct: 69539 cctgccgccgccatcacggccacc 69562


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,721,551
Number of Sequences: 3902068
Number of extensions: 3721551
Number of successful extensions: 73502
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 73203
Number of HSP's gapped (non-prelim): 298
length of query: 469
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 447
effective length of database: 17,147,199,772
effective search space: 7664798298084
effective search space used: 7664798298084
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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