ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart07e06 |
|---|---|
| Clone Library Name | barley_pub |
>AMY_THECU (P29750) Alpha-amylase precursor (EC 3.2.1.1) (1,4-alpha-D-glucan| glucanohydrolase) Length = 605 Score = 30.8 bits (68), Expect = 2.2 Identities = 19/67 (28%), Positives = 26/67 (38%) Frame = +2 Query: 41 GSWQQGHSATYNAPSRI*VVCKGFSPPPVGKGASRRPITAHRPDRLSPWHGPLGAQAPLT 220 GSWQ S V G P G G + + + +R +PW G A A Sbjct: 532 GSWQPAQGVRLRTDSGTYPVWSGAVDLPAGVGFEYKYV---KLNRTAPWSGSRAATASPP 588 Query: 221 WVGASGG 241 W+ + GG Sbjct: 589 WMTSGGG 595
>BETA_RHILO (Q985M5) Choline dehydrogenase (EC 1.1.99.1) (CHD) (CDH)| Length = 550 Score = 30.0 bits (66), Expect = 3.7 Identities = 14/45 (31%), Positives = 23/45 (51%) Frame = +1 Query: 184 MARALGGASAPNVGRGERRAQASHASLDSDLEAFSHNPAHGSFAP 318 + R + G SA + RG+ + SH D DL+ F + A ++ P Sbjct: 423 LTREIFGQSAFDAFRGQEISPGSHVQSDDDLDVFIRDHAESAYHP 467
>SMCA2_HUMAN (P51531) Probable global transcription activator SNF2L2 (EC| 3.6.1.-) (ATP-dependent helicase SMARCA2) (SNF2-alpha) (SWI/SNF-related matrix associated actin dependent regulator of chromatin subfamily A member 2) (hBRM) Length = 1586 Score = 30.0 bits (66), Expect = 3.7 Identities = 15/45 (33%), Positives = 21/45 (46%) Frame = +2 Query: 107 GFSPPPVGKGASRRPITAHRPDRLSPWHGPLGAQAPLTWVGASGG 241 G PP G G + P+ H +SP PLGA ++ + GG Sbjct: 98 GMRPPHPGMGPPQSPMDQHSQGYMSPHPSPLGAPEHVSSPMSGGG 142
>PRGR_MOUSE (Q00175) Progesterone receptor (PR)| Length = 923 Score = 29.6 bits (65), Expect = 4.8 Identities = 20/59 (33%), Positives = 28/59 (47%) Frame = +1 Query: 187 ARALGGASAPNVGRGERRAQASHASLDSDLEAFSHNPAHGSFAPLAFQPSAMTNCVNQR 363 A GG S+ V A +S ++L+ L P GSFAPL +P A +C+ R Sbjct: 432 AAVAGGPSSAAVSP----ASSSGSALECILYKAEAPPTQGSFAPLPCKPPAAASCLLPR 486
>INP5E_HUMAN (Q9NRR6) 72 kDa inositol polyphosphate 5-phosphatase (EC 3.1.3.36)| (Phosphatidylinositol-4,5-bisphosphate 5-phosphatase) (Phosphatidylinositol polyphosphate 5-phosphatase type IV) Length = 644 Score = 29.6 bits (65), Expect = 4.8 Identities = 13/33 (39%), Positives = 19/33 (57%) Frame = -2 Query: 287 LNASKSESKLACDACARRSPRPTLGALAPPRAR 189 L + S LACD C+ RS + + LAP R++ Sbjct: 234 LGPGRPRSPLACDDCSLRSAKSSFSLLAPIRSK 266
>RTN4R_MOUSE (Q99PI8) Reticulon-4 receptor precursor (Nogo receptor) (NgR)| (Nogo-66 receptor) Length = 473 Score = 29.6 bits (65), Expect = 4.8 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 1/58 (1%) Frame = +3 Query: 9 RIRATWGWISVDRGSKATLPLTMPRRVFKSSAKDSAHRPL-GRELRGGRSRHIGRTDL 179 R R W W+ RGS + +P +P+R+ K A L G + G R I + L Sbjct: 267 RARPLWAWLQKFRGSSSEVPCNLPQRLADRDLKRLAASDLEGCAVASGPFRPIQTSQL 324
>RTN4R_MACFA (Q9N0E3) Reticulon-4 receptor precursor (Nogo receptor) (NgR)| (Nogo-66 receptor) Length = 473 Score = 29.6 bits (65), Expect = 4.8 Identities = 10/27 (37%), Positives = 17/27 (62%) Frame = +3 Query: 9 RIRATWGWISVDRGSKATLPLTMPRRV 89 R R W W+ RGS + +P ++P+R+ Sbjct: 267 RARPLWAWLQKFRGSSSEVPCSLPQRL 293
>RTN4R_HUMAN (Q9BZR6) Reticulon-4 receptor precursor (Nogo receptor) (NgR)| (Nogo-66 receptor) Length = 473 Score = 29.6 bits (65), Expect = 4.8 Identities = 10/27 (37%), Positives = 17/27 (62%) Frame = +3 Query: 9 RIRATWGWISVDRGSKATLPLTMPRRV 89 R R W W+ RGS + +P ++P+R+ Sbjct: 267 RARPLWAWLQKFRGSSSEVPCSLPQRL 293
>RTN4R_RAT (Q99M75) Reticulon-4 receptor precursor (Nogo receptor) (NgR)| (Nogo-66 receptor) Length = 473 Score = 29.3 bits (64), Expect = 6.3 Identities = 10/27 (37%), Positives = 16/27 (59%) Frame = +3 Query: 9 RIRATWGWISVDRGSKATLPLTMPRRV 89 R R W W+ RGS + +P +P+R+ Sbjct: 267 RARPLWAWLQKFRGSSSEVPCNLPQRL 293
>PTH_NANEQ (P61235) Peptidyl-tRNA hydrolase (EC 3.1.1.29) (PTH)| Length = 115 Score = 28.9 bits (63), Expect = 8.2 Identities = 11/26 (42%), Positives = 20/26 (76%) Frame = +1 Query: 217 NVGRGERRAQASHASLDSDLEAFSHN 294 ++G+G+ AQ +HASLD+ L+ + +N Sbjct: 12 DIGKGKLCAQVAHASLDAALKVYRNN 37
>IL17C_HUMAN (Q9P0M4) Interleukin-17C precursor (IL-17C) (Cytokine CX2)| Length = 197 Score = 28.9 bits (63), Expect = 8.2 Identities = 20/52 (38%), Positives = 24/52 (46%) Frame = +1 Query: 196 LGGASAPNVGRGERRAQASHASLDSDLEAFSHNPAHGSFAPLAFQPSAMTNC 351 LG A + RG + QA +L S LEA SH H +PSA T C Sbjct: 44 LGQAPPHLLARGAKWGQALPVALVSSLEAASHRGRHE-------RPSATTQC 88
>MYO15_HUMAN (Q9UKN7) Myosin-15 (Myosin XV) (Unconventional myosin-15)| Length = 3530 Score = 28.9 bits (63), Expect = 8.2 Identities = 14/45 (31%), Positives = 20/45 (44%) Frame = +2 Query: 65 ATYNAPSRI*VVCKGFSPPPVGKGASRRPITAHRPDRLSPWHGPL 199 ++ N PSR+ + S PP + + HRP R W PL Sbjct: 860 SSLNLPSRLPHTWRRLSEPPTRAVKPQVRLPFHRPPRAGAWRAPL 904
>SRBP1_RAT (P56720) Sterol regulatory element-binding protein 1 (SREBP-1)| (Sterol regulatory element-binding transcription factor 1) (Adipocyte determination- and differentiation-dependent factor 1) (ADD1) (Fragment) Length = 1024 Score = 28.9 bits (63), Expect = 8.2 Identities = 28/71 (39%), Positives = 35/71 (49%) Frame = +1 Query: 133 GSFEAADHGTSAGPT*PMARALGGASAPNVGRGERRAQASHASLDSDLEAFSHNPAHGSF 312 G F+A G G T P + GAS+P + +S ASL S LEAF P + Sbjct: 21 GLFDAPYAGGETGDTGPSSP---GASSPE-------SFSSPASLGSSLEAFLGGP-KVTP 69 Query: 313 APLAFQPSAMT 345 APL+ PSA T Sbjct: 70 APLSPPPSAPT 80 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 74,505,948 Number of Sequences: 219361 Number of extensions: 1543467 Number of successful extensions: 4593 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 4394 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4585 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3638905326 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
