ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart07e04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|CP000282.1| Saccharophagus degradans 2-40, complete genome 40 1.0
2gb|U41107.1| Caenorhabditis elegans cosmid F55C12, complete sequ... 38 4.1
3emb|AL359252.17| Human DNA sequence from clone RP11-111H14 on ch... 38 4.1
4ref|XM_966922.1| PREDICTED: Tribolium castaneum similar to CG952... 38 4.1
5gb|AC115222.3| Homo sapiens BAC clone RP11-48F23 from 4, complet... 38 4.1

>gb|CP000282.1| Saccharophagus degradans 2-40, complete genome
          Length = 5057531

 Score = 40.1 bits (20), Expect = 1.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 6     aattaatatttggcaaagac 25
             ||||||||||||||||||||
Sbjct: 85690 aattaatatttggcaaagac 85671



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>gb|U41107.1| Caenorhabditis elegans cosmid F55C12, complete sequence
          Length = 39086

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 34    acatcatgaccccataatccact 56
             |||||||||||||||||| ||||
Sbjct: 28710 acatcatgaccccataattcact 28732



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>emb|AL359252.17| Human DNA sequence from clone RP11-111H14 on chromosome 6 Contains part
             of the UST gene for uronyl-2-sulfotransferase and two CpG
             islands, complete sequence
          Length = 178929

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 8     ttaatatttggcaaagact 26
             |||||||||||||||||||
Sbjct: 70527 ttaatatttggcaaagact 70509



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>ref|XM_966922.1| PREDICTED: Tribolium castaneum similar to CG9523-PA (LOC660713),
          mRNA
          Length = 1035

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                 
Query: 71 ggttccaactcgcagggaaaaac 93
          ||||||||||||| |||||||||
Sbjct: 26 ggttccaactcgctgggaaaaac 48



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>gb|AC115222.3| Homo sapiens BAC clone RP11-48F23 from 4, complete sequence
          Length = 127707

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 11    atatttggcaaagacttga 29
             |||||||||||||||||||
Sbjct: 73301 atatttggcaaagacttga 73283


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 812,575
Number of Sequences: 3902068
Number of extensions: 812575
Number of successful extensions: 34684
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 34668
Number of HSP's gapped (non-prelim): 16
length of query: 95
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 74
effective length of database: 17,151,101,840
effective search space: 1269181536160
effective search space used: 1269181536160
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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