ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart07e02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CUTI_PHYCP (P41754) Putative cutinase (EC 3.1.1.74) (Cutin hydro... 28 5.4
2PRKDC_HUMAN (P78527) DNA-dependent protein kinase catalytic subu... 27 9.3
3HST1_YEAST (P53685) NAD-dependent deacetylase HST1 (EC 3.5.1.-) ... 27 9.3
4STUB_DROME (Q05319) Serine proteinase stubble (EC 3.4.21.-) (Pro... 27 9.3
5TAH18_YEAST (Q12181) Probable NADPH reductase TAH18 (EC 1.-.-.-) 27 9.3
6PURA_BRUSU (P65879) Adenylosuccinate synthetase (EC 6.3.4.4) (IM... 27 9.3
7PURA_BRUME (P65878) Adenylosuccinate synthetase (EC 6.3.4.4) (IM... 27 9.3
8PURA_BRUAB (P0C115) Adenylosuccinate synthetase (EC 6.3.4.4) (IM... 27 9.3
9PURA_BRUA2 (Q2YQI5) Adenylosuccinate synthetase (EC 6.3.4.4) (IM... 27 9.3
10P2Y10_HUMAN (O00398) Putative P2Y purinoceptor 10 (P2Y10) (P2Y-l... 27 9.3
11JHD2C_MOUSE (Q69ZK6) Probable JmjC domain-containing histone dem... 27 9.3

>CUTI_PHYCP (P41754) Putative cutinase (EC 3.1.1.74) (Cutin hydrolase)|
          Length = 210

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
 Frame = -2

Query: 218 YASSLSKIYGEVSSVDQFVTSLCFXLFPRFLCVYSSCKMLGSLCG-RIKPYYKTYPLWAT 42
           ++  +S +     S  Q   S C  L P F+ +YS+  +L +L    + PY  T PL   
Sbjct: 112 FSPCISGVANSQHSSSQSPRSHCRSLVPSFIAIYSASVVLCALISCFLDPYETTLPLTNV 171

Query: 41  *GC 33
             C
Sbjct: 172 TNC 174



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>PRKDC_HUMAN (P78527) DNA-dependent protein kinase catalytic subunit (EC 2.7.11.1)|
            (DNA-PK catalytic subunit) (DNA-PKcs) (DNPK1) (p460)
          Length = 4128

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = -3

Query: 145  TYFPDFCVCTPHVKCWAACVVALNPIIKLIRCGQHRDAKDGIKLID 8
            ++FP F  C   + C  A +++L+P      C        GI+L++
Sbjct: 2849 SFFPPFVSCIQDISCQHAALLSLDPAAVSAGCLASLQQPVGIRLLE 2894



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>HST1_YEAST (P53685) NAD-dependent deacetylase HST1 (EC 3.5.1.-) (Homologous to|
           SIR2 protein 1)
          Length = 503

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 272 CHWDTSHRRREDLNMIPRYASSLSK 198
           CHWD  H++ +DL  I    + + K
Sbjct: 465 CHWDIPHKKWQDLKKIDYNCTEIDK 489



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>STUB_DROME (Q05319) Serine proteinase stubble (EC 3.4.21.-) (Protein|
           stubble-stubbloid) [Contains: Serine proteinase stubble
           non-catalytic chain; Serine proteinase stubble catalytic
           chain]
          Length = 787

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 6   QSXSFIPSFASLCCPQRISFIIGFNAT 86
           Q   F P  + +C P+  S +IG NAT
Sbjct: 648 QPLEFAPHVSPICLPETDSLLIGMNAT 674



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>TAH18_YEAST (Q12181) Probable NADPH reductase TAH18 (EC 1.-.-.-)|
          Length = 623

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 14/55 (25%), Positives = 22/55 (40%)
 Frame = +2

Query: 80  CDHTSCPTFYMRSTHTKIWEIGXNINSLQTGQRKILHHRSYSASLHTSESYSDLH 244
           CD  S P     S   KIW    ++  ++ GQ ++   R       T +   DL+
Sbjct: 325 CDFMSIPR---TSFFLKIWTFATDVTKMERGQEQLNDQREKLRQFATDQDMQDLY 376



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>PURA_BRUSU (P65879) Adenylosuccinate synthetase (EC 6.3.4.4) (IMP--aspartate|
           ligase) (AdSS) (AMPSase)
          Length = 429

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
 Frame = -2

Query: 83  RIKPYYKTYPLWA--T*GCKGWN 21
           R+KP Y+T P W+  T G + WN
Sbjct: 365 RVKPIYETLPGWSETTAGARSWN 387



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>PURA_BRUME (P65878) Adenylosuccinate synthetase (EC 6.3.4.4) (IMP--aspartate|
           ligase) (AdSS) (AMPSase)
          Length = 429

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
 Frame = -2

Query: 83  RIKPYYKTYPLWA--T*GCKGWN 21
           R+KP Y+T P W+  T G + WN
Sbjct: 365 RVKPIYETLPGWSETTAGARSWN 387



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>PURA_BRUAB (P0C115) Adenylosuccinate synthetase (EC 6.3.4.4) (IMP--aspartate|
           ligase) (AdSS) (AMPSase)
          Length = 429

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
 Frame = -2

Query: 83  RIKPYYKTYPLWA--T*GCKGWN 21
           R+KP Y+T P W+  T G + WN
Sbjct: 365 RVKPIYETLPGWSETTAGARSWN 387



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>PURA_BRUA2 (Q2YQI5) Adenylosuccinate synthetase (EC 6.3.4.4) (IMP--aspartate|
           ligase) (AdSS) (AMPSase)
          Length = 429

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
 Frame = -2

Query: 83  RIKPYYKTYPLWA--T*GCKGWN 21
           R+KP Y+T P W+  T G + WN
Sbjct: 365 RVKPIYETLPGWSETTAGARSWN 387



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>P2Y10_HUMAN (O00398) Putative P2Y purinoceptor 10 (P2Y10) (P2Y-like receptor)|
          Length = 339

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = -3

Query: 196 SMVKYLPLTSL*RVYVXTYFPDFCVCTPHVKCWAACVVALNPIIKLIRCGQHRD 35
           +MVK   ++S   V +  YF  FC+C   + C       L+PI+      + RD
Sbjct: 267 TMVKETIISSCPVVRIALYFHPFCLCLASLCC------LLDPILYYFMASEFRD 314



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>JHD2C_MOUSE (Q69ZK6) Probable JmjC domain-containing histone demethylation|
            protein 2C (EC 1.14.11.-) (Jumonji domain-containing
            protein 1C)
          Length = 2350

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 320  HEDQAQRLHGKIP*HLCHWDTSH 252
            H+ +++ L GKIP HL H   SH
Sbjct: 963  HQPESESLVGKIPDHLPHQSASH 985


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,619,940
Number of Sequences: 219361
Number of extensions: 1048038
Number of successful extensions: 2086
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2086
length of database: 80,573,946
effective HSP length: 99
effective length of database: 58,857,207
effective search space used: 1412572968
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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