ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart07d12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1APSB_EMENI (O60039) Anucleate primary sterigmata protein B 30 3.7
2TNIK_HUMAN (Q9UKE5) TRAF2 and NCK-interacting kinase (EC 2.7.11.1) 29 4.8

>APSB_EMENI (O60039) Anucleate primary sterigmata protein B|
          Length = 1051

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
 Frame = +2

Query: 47  EWCPK-REELQAKHMHENTRKQRLDASRRDIAQNKRQTSANQSSLITLSESKRRKETASS 223
           E C K ++ L A+ +  NT K+RL     ++ +     + ++SSLI  +  K +KE  S+
Sbjct: 580 EECRKLKKNLSAQEIETNTWKERLTDLENNLRETLGDLTGSRSSLIA-NIMKLQKELEST 638

Query: 224 LLTTHG*FSLLD*SVTALIN 283
            L      S LD   T L N
Sbjct: 639 ALELESTRSTLDEKETLLRN 658



to top

>TNIK_HUMAN (Q9UKE5) TRAF2 and NCK-interacting kinase (EC 2.7.11.1)|
          Length = 1360

 Score = 29.3 bits (64), Expect = 4.8
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +2

Query: 62  REELQAKHMHENTRKQRLDASRRDIAQNKRQTSANQSSLITLSESKRRK 208
           R +L  K   E  R+Q+L+  +R+  ++KRQ  A +   I   + +RR+
Sbjct: 356 RLQLANKERSEALRRQQLEQQQRENEEHKRQLLAERQKRIEEQKEQRRR 404


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,688,078
Number of Sequences: 219361
Number of extensions: 765332
Number of successful extensions: 2376
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2374
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2793557952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top