ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart07d12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 70 7e-09
2gb|AC129008.1| Genomic sequence for Oryza sativa, Nipponbare str... 70 7e-09
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 70 7e-09
4ref|XM_781309.1| PREDICTED: Strongylocentrotus purpuratus simila... 44 0.39
5gb|AC092389.4| Oryza sativa chromosome 10 BAC OSJNBa0053C23 geno... 44 0.39
6dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.39
7gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 44 0.39
8gb|AC124830.8| Mus musculus chromosome 17, clone RP24-165B21, co... 40 6.1
9emb|AJ243961.1|OSA243961 Oryza sativa chromosome 4 BAC l1332 gen... 40 6.1
10emb|CR709890.2|CNS0GAPA Tetraodon nigroviridis full-length cDNA 40 6.1
11gb|AC139214.12| Mus musculus chromosome 17, clone RP23-345D6, co... 40 6.1
12ref|XM_969673.1| PREDICTED: Tribolium castaneum similar to CG331... 40 6.1
13ref|XM_794780.1| PREDICTED: Strongylocentrotus purpuratus hypoth... 40 6.1
14ref|XM_794951.1| PREDICTED: Strongylocentrotus purpuratus hypoth... 40 6.1
15emb|AL662970.2|OSJN00174 Oryza sativa genomic DNA, chromosome 4,... 40 6.1
16emb|AL845158.5| Mouse DNA sequence from clone RP23-147E6 on chro... 40 6.1
17dbj|AK046990.1| Mus musculus 10 days neonate cerebellum cDNA, RI... 40 6.1
18gb|AF369300.1|AF369300 Rabies virus V037.MG phosphoprotein (P) g... 40 6.1
19dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
20dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
21dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
22dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
23dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
24dbj|AP004222.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
25dbj|AP003563.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
26dbj|AP003524.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
27dbj|AP005740.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
28dbj|AP004461.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
29dbj|AK109790.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.1
30dbj|AK066479.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.1
31emb|AM236324.1| Escherichia coli genome fragment containing the ... 40 6.1
32emb|AL117264.3| Oryza sativa genomic DNA, chromosome 4, BAC clon... 40 6.1
33gb|AC005837.1|AC005837 Homo sapiens chromosome 17, clone hRPK.31... 40 6.1
34gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.1
35emb|AL731884.4|CNS08C8O Oryza sativa chromosome 12, . BAC OSJNBa... 40 6.1
36emb|AL928774.3|CNS08CC4 Oryza sativa chromosome 12, . BAC OSJNBa... 40 6.1
37emb|AL845318.8| Mouse DNA sequence from clone RP23-326F22 on chr... 40 6.1
38gb|CP000038.1| Shigella sonnei Ss046, complete genome 40 6.1
39dbj|AP000915.5| Homo sapiens genomic DNA, chromosome 18p clone:R... 40 6.1 
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 41/43 (95%)
 Strand = Plus / Minus

                                                          
Query: 24      agtactgtcaatgatacagcactgaatggtgccccaaaagaga 66
               ||||||| |||||||||||||||||||||||| ||||||||||
Sbjct: 7620182 agtactgccaatgatacagcactgaatggtgcaccaaaagaga 7620140
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>gb|AC129008.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0096L14, from chromosome 3, complete sequence
          Length = 131142

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 41/43 (95%)
 Strand = Plus / Plus

                                                        
Query: 24    agtactgtcaatgatacagcactgaatggtgccccaaaagaga 66
             ||||||| |||||||||||||||||||||||| ||||||||||
Sbjct: 95108 agtactgccaatgatacagcactgaatggtgcaccaaaagaga 95150
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 41/43 (95%)
 Strand = Plus / Minus

                                                          
Query: 24      agtactgtcaatgatacagcactgaatggtgccccaaaagaga 66
               ||||||| |||||||||||||||||||||||| ||||||||||
Sbjct: 7618017 agtactgccaatgatacagcactgaatggtgcaccaaaagaga 7617975
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>ref|XM_781309.1| PREDICTED: Strongylocentrotus purpuratus similar to 5-3
            exoribonuclease 2 (101.3 kD) (2O455) (LOC581300), partial
            mRNA
          Length = 2015

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 197  aagagaagaaaagaaacagcaa 218
            ||||||||||||||||||||||
Sbjct: 1820 aagagaagaaaagaaacagcaa 1841
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>gb|AC092389.4| Oryza sativa chromosome 10 BAC OSJNBa0053C23 genomic sequence, complete
             sequence
          Length = 194361

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 165   atcagtcatcactcatcaccct 186
             ||||||||||||||||||||||
Sbjct: 64488 atcagtcatcactcatcaccct 64509
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 165      atcagtcatcactcatcaccct 186
                ||||||||||||||||||||||
Sbjct: 20186753 atcagtcatcactcatcaccct 20186774
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 165      atcagtcatcactcatcaccct 186
                ||||||||||||||||||||||
Sbjct: 20198029 atcagtcatcactcatcaccct 20198050
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>gb|AC124830.8| Mus musculus chromosome 17, clone RP24-165B21, complete sequence
          Length = 176889

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 179   atcaccctctctgaatccaa 198
             ||||||||||||||||||||
Sbjct: 94478 atcaccctctctgaatccaa 94497
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>emb|AJ243961.1|OSA243961 Oryza sativa chromosome 4 BAC l1332 genomic sequences
          Length = 74658

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 189   ctgaatccaagagaagaaaagaaa 212
             ||||||||||||||||||| ||||
Sbjct: 49013 ctgaatccaagagaagaaaggaaa 48990
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>emb|CR709890.2|CNS0GAPA Tetraodon nigroviridis full-length cDNA
          Length = 567

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 334 gtggtgccggtggtgctgga 353
           ||||||||||||||||||||
Sbjct: 181 gtggtgccggtggtgctgga 200
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>gb|AC139214.12| Mus musculus chromosome 17, clone RP23-345D6, complete sequence
          Length = 286283

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 179    atcaccctctctgaatccaa 198
              ||||||||||||||||||||
Sbjct: 280020 atcaccctctctgaatccaa 280001
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>ref|XM_969673.1| PREDICTED: Tribolium castaneum similar to CG33131-PA (LOC663635),
            mRNA
          Length = 3711

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 336  ggtgccggtggtgctggaag 355
            ||||||||||||||||||||
Sbjct: 2229 ggtgccggtggtgctggaag 2248
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>ref|XM_794780.1| PREDICTED: Strongylocentrotus purpuratus hypothetical protein
           LOC576043 (LOC576043), partial mRNA
          Length = 460

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 334 gtggtgccggtggtgctgga 353
           ||||||||||||||||||||
Sbjct: 230 gtggtgccggtggtgctgga 249
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>ref|XM_794951.1| PREDICTED: Strongylocentrotus purpuratus hypothetical protein
           LOC579525 (LOC579525), mRNA
          Length = 432

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 334 gtggtgccggtggtgctgga 353
           ||||||||||||||||||||
Sbjct: 254 gtggtgccggtggtgctgga 273
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>emb|AL662970.2|OSJN00174 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0058K23,
             complete sequence
          Length = 164805

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 189   ctgaatccaagagaagaaaagaaa 212
             ||||||||||||||||||| ||||
Sbjct: 69786 ctgaatccaagagaagaaaggaaa 69809
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>emb|AL845158.5| Mouse DNA sequence from clone RP23-147E6 on chromosome 4 Contains a
              component of oligomeric golgi complex 1 (Cog5) pseudogene
              and part of the Ptprd gene for receptor type protein
              tyrosine phosphatase D, complete sequence
          Length = 198523

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 192    aatccaagagaagaaaagaa 211
              ||||||||||||||||||||
Sbjct: 101039 aatccaagagaagaaaagaa 101020
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>dbj|AK046990.1| Mus musculus 10 days neonate cerebellum cDNA, RIKEN full-length
            enriched library, clone:B930009L08
            product:unclassifiable, full insert sequence
          Length = 2946

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 179  atcaccctctctgaatccaa 198
            ||||||||||||||||||||
Sbjct: 1507 atcaccctctctgaatccaa 1488
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>gb|AF369300.1|AF369300 Rabies virus V037.MG phosphoprotein (P) gene, complete cds
          Length = 918

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 284 tagagttagccagagcaacc 303
           ||||||||||||||||||||
Sbjct: 814 tagagttagccagagcaacc 795
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 189      ctgaatccaagagaagaaaagaaa 212
                ||||||||||||||||||| ||||
Sbjct: 31492103 ctgaatccaagagaagaaaggaaa 31492126
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 193      atccaagagaagaaaagaaa 212
                ||||||||||||||||||||
Sbjct: 23931226 atccaagagaagaaaagaaa 23931245
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 199     gagaagaaaagaaacagcaa 218
               ||||||||||||||||||||
Sbjct: 2883268 gagaagaaaagaaacagcaa 2883287
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 163      caatcagtcatcactcatca 182
                ||||||||||||||||||||
Sbjct: 11013294 caatcagtcatcactcatca 11013313
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 354      agaagtgcgccggcaaagga 373
                ||||||||||||||||||||
Sbjct: 18456361 agaagtgcgccggcaaagga 18456380
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>dbj|AP004222.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1003B09
          Length = 155263

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 354   agaagtgcgccggcaaagga 373
             ||||||||||||||||||||
Sbjct: 80119 agaagtgcgccggcaaagga 80138
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>dbj|AP003563.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1168H06
          Length = 185600

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 354   agaagtgcgccggcaaagga 373
             ||||||||||||||||||||
Sbjct: 55578 agaagtgcgccggcaaagga 55597
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>dbj|AP003524.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0501G08
          Length = 173505

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 163   caatcagtcatcactcatca 182
             ||||||||||||||||||||
Sbjct: 97376 caatcagtcatcactcatca 97395
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>dbj|AP005740.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0015A04
          Length = 152058

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 199    gagaagaaaagaaacagcaa 218
              ||||||||||||||||||||
Sbjct: 146417 gagaagaaaagaaacagcaa 146436
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>dbj|AP004461.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0443G08
          Length = 162139

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 199   gagaagaaaagaaacagcaa 218
             ||||||||||||||||||||
Sbjct: 56330 gagaagaaaagaaacagcaa 56349
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>dbj|AK109790.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-147-D07, full
            insert sequence
          Length = 1393

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 163  caatcagtcatcactcatca 182
            ||||||||||||||||||||
Sbjct: 1267 caatcagtcatcactcatca 1248
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>dbj|AK066479.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013069B01, full
            insert sequence
          Length = 3292

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 354  agaagtgcgccggcaaagga 373
            ||||||||||||||||||||
Sbjct: 2304 agaagtgcgccggcaaagga 2285
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>emb|AM236324.1| Escherichia coli genome fragment containing the yersiniabactin, cob and
             pdu gene clusters, strain A0 34/86
          Length = 84189

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 7     ataaattaacaacatatagt 26
             ||||||||||||||||||||
Sbjct: 66054 ataaattaacaacatatagt 66073
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>emb|AL117264.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0313F03, complete
              sequence
          Length = 131195

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 189    ctgaatccaagagaagaaaagaaa 212
              ||||||||||||||||||| ||||
Sbjct: 110383 ctgaatccaagagaagaaaggaaa 110406
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>gb|AC005837.1|AC005837 Homo sapiens chromosome 17, clone hRPK.318_A_15, complete sequence
          Length = 163218

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 197    aagagaagaaaagaaacagc 216
              ||||||||||||||||||||
Sbjct: 142323 aagagaagaaaagaaacagc 142342
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 193      atccaagagaagaaaagaaa 212
                ||||||||||||||||||||
Sbjct: 23859432 atccaagagaagaaaagaaa 23859451
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>emb|AL731884.4|CNS08C8O Oryza sativa chromosome 12, . BAC OSJNBa0014A07 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 144767

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 193   atccaagagaagaaaagaaa 212
             ||||||||||||||||||||
Sbjct: 41957 atccaagagaagaaaagaaa 41938
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>emb|AL928774.3|CNS08CC4 Oryza sativa chromosome 12, . BAC OSJNBa0078O17 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 176388

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 193    atccaagagaagaaaagaaa 212
              ||||||||||||||||||||
Sbjct: 156170 atccaagagaagaaaagaaa 156151
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>emb|AL845318.8| Mouse DNA sequence from clone RP23-326F22 on chromosome 2, complete
              sequence
          Length = 202162

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 195    ccaagagaagaaaagaaaca 214
              ||||||||||||||||||||
Sbjct: 198216 ccaagagaagaaaagaaaca 198197
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>gb|CP000038.1| Shigella sonnei Ss046, complete genome
          Length = 4825265

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 7       ataaattaacaacatatagt 26
               ||||||||||||||||||||
Sbjct: 2156875 ataaattaacaacatatagt 2156894
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>dbj|AP000915.5| Homo sapiens genomic DNA, chromosome 18p clone:RP11-720L2, complete
              sequences
          Length = 188439

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 164    aatcagtcatcactcatcac 183
              ||||||||||||||||||||
Sbjct: 169709 aatcagtcatcactcatcac 169690


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,423,998
Number of Sequences: 3902068
Number of extensions: 4423998
Number of successful extensions: 93274
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 92824
Number of HSP's gapped (non-prelim): 450
length of query: 453
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 431
effective length of database: 17,147,199,772
effective search space: 7390443101732
effective search space used: 7390443101732
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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