>PSD4_ARATH (P55034) 26S proteasome non-ATPase regulatory subunit 4 (26S|
           proteasome regulatory subunit S5A) (Multiubiquitin
           chain-binding protein)
          Length = 386

 Score = 51.6 bits (122), Expect = 8e-07
 Identities = 26/51 (50%), Positives = 39/51 (76%), Gaps = 1/51 (1%)
 Frame = -3

Query: 369 LQMSVQDAEASGQFDM-SKVFEDRSFVTSILNSLPGVDPNDPSVKDLLASL 220
           LQMS+   E+S      + +  +++F++S+L+SLPGVDPNDP+VK+LLASL
Sbjct: 314 LQMSMSGEESSEATGAGNNLLGNQAFISSVLSSLPGVDPNDPAVKELLASL 364

>PSD4_HUMAN (P55036) 26S proteasome non-ATPase regulatory subunit 4 (26S|
           proteasome regulatory subunit S5A) (Rpn10)
           (Multiubiquitin chain-binding protein) (Antisecretory
           factor 1) (AF) (ASF)
          Length = 377

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 19/72 (26%)
 Frame = -3

Query: 369 LQMSVQDAE----------ASGQFDMSK---------VFEDRSFVTSILNSLPGVDPNDP 247
           +QMS+Q AE          AS   D S+         V +D  F+ S+L +LPGVDPN+ 
Sbjct: 291 MQMSLQGAEFGQAESADIDASSAMDTSEPAKEEDDYDVMQDPEFLQSVLENLPGVDPNNE 350

Query: 246 SVKDLLASLHGQ 211
           ++++ + SL  Q
Sbjct: 351 AIRNAMGSLASQ 362

>PSD4_DROME (P55035) 26S proteasome non-ATPase regulatory subunit 4 (26S|
           proteasome regulatory subunit S5A) (Multiubiquitin
           chain-binding protein) (54 kDa subunit of mu particle)
           (p54)
          Length = 396

 Score = 40.0 bits (92), Expect = 0.002
 Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 19/70 (27%)
 Frame = -3

Query: 369 LQMSVQDA---------------EASGQFDM----SKVFEDRSFVTSILNSLPGVDPNDP 247
           +QMS+QDA               EA+   D+    S+V  D +F+ S+L +LPGVDP   
Sbjct: 312 MQMSMQDAPDDSVTQQAKRPKTDEANAPMDVDEDYSEVIGDPAFLQSVLENLPGVDPQSE 371

Query: 246 SVKDLLASLH 217
           +V+D + SL+
Sbjct: 372 AVRDAVGSLN 381

>PSD4_MOUSE (O35226) 26S proteasome non-ATPase regulatory subunit 4 (26S|
           proteasome regulatory subunit S5A) (Rpn10)
           (Multiubiquitin chain-binding protein)
          Length = 376

 Score = 38.9 bits (89), Expect = 0.005
 Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 18/71 (25%)
 Frame = -3

Query: 369 LQMSVQ---------DAEASGQFDMSK---------VFEDRSFVTSILNSLPGVDPNDPS 244
           +QMS+Q         D +AS   D S          V +D  F+ S+L +LPGVDPN+ +
Sbjct: 291 MQMSLQGTEFSQESADMDASSAMDTSDPVKEEDDYDVMQDPEFLQSVLENLPGVDPNNAA 350

Query: 243 VKDLLASLHGQ 211
           ++ ++ +L  Q
Sbjct: 351 IRSVMGALASQ 361

>PSD4_SCHMA (O17453) 26S proteasome non-ATPase regulatory subunit 4 (26S|
           proteasome regulatory subunit S5A)
          Length = 420

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -3

Query: 315 VFEDRSFVTSILNSLPGVDPNDPSVKDLLASL 220
           V  D  F+ S+L SLPGVD  +  V+  + +L
Sbjct: 367 VMYDAEFLESVLQSLPGVDTQNEDVRKAINAL 398

>ATG3_KLULA (Q6CL19) Autophagy-related protein 3 (Autophagy-related E2-like|
           conjugation enzyme ATG3)
          Length = 302

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 315 LCSYQIDQTPLRPEQTFEE 371
           LC Y  D TPL P+Q FE+
Sbjct: 182 LCGYDNDGTPLSPDQMFED 200


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,818,211
Number of Sequences: 219361
Number of extensions: 832816
Number of successful extensions: 1904
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1904
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2395157885
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)