ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart07d09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Y6G5_ENCCU (Q8SV60) Hypothetical protein ECU06_1650 32 0.85
2LEG3_MOUSE (P16110) Galectin-3 (Galactose-specific lectin 3) (Ma... 30 4.2
3CRFR2_HUMAN (Q13324) Corticotropin-releasing factor receptor 2 p... 28 9.4
4AA2DB_BRARE (Q8JG69) Alpha-2Db adrenergic receptor (Alpha-2Db ad... 28 9.4

>Y6G5_ENCCU (Q8SV60) Hypothetical protein ECU06_1650|
          Length = 391

 Score = 32.0 bits (71), Expect = 0.85
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = +1

Query: 349 IRGPDHAQIDHRRLN*TLATPPVAMPLL--CGSPAPYPPCSAGYP 477
           +RGP+H  +DH     TL++P +A P L    +P P  P +  YP
Sbjct: 38  VRGPEHLAVDH-----TLSSPALAKPNLPVLSTPEPCSPPANPYP 77



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>LEG3_MOUSE (P16110) Galectin-3 (Galactose-specific lectin 3) (Mac-2 antigen)|
           (IgE-binding protein) (35 kDa lectin)
           (Carbohydrate-binding protein 35) (CBP 35)
           (Laminin-binding protein) (Lectin L-29) (L-34
           galactoside-binding lectin)
          Length = 263

 Score = 29.6 bits (65), Expect = 4.2
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +1

Query: 412 PVAMPLLCGSPAPYPPCSAGYP 477
           P A P   G+P  YP CS GYP
Sbjct: 94  PGAFPGQPGAPGAYPQCSGGYP 115



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>CRFR2_HUMAN (Q13324) Corticotropin-releasing factor receptor 2 precursor (CRF-R|
           2) (CRF2) (Corticotropin-releasing hormone receptor 2)
           (CRH-R 2)
          Length = 411

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -3

Query: 157 GTYLPTTHSHMVCLYAVSGEQLCDLLLIGWMLPHPGIV 44
           G YL   H+ +V  Y+    + C  L IGW +P P IV
Sbjct: 206 GCYL---HTAIVMTYSTERLRKCLFLFIGWCIPFPIIV 240



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>AA2DB_BRARE (Q8JG69) Alpha-2Db adrenergic receptor (Alpha-2Db adrenoceptor)|
           (Alpha-2Db adrenoreceptor) (Alpha(2Db)AR)
          Length = 415

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 153 LTCLLRTHTWFVYTLCPVSSFA 88
           L CLL   TW++ + C VS FA
Sbjct: 177 LECLLNNETWYILSSCIVSFFA 198


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,412,943
Number of Sequences: 219361
Number of extensions: 1081785
Number of successful extensions: 2739
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2738
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3188886965
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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