ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart07d07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|U43495.1|HVU43495 Hordeum vulgare jasmonate-induced mRNA, par... 886 0.0
2ref|XM_475910.1| Oryza sativa (japonica cultivar-group), predic... 115 1e-22
3gb|AC104284.2| Oryza sativa (japonica cultivar-group) chromosome... 115 1e-22
4gb|AC098832.3| Oryza sativa (japonica cultivar-group) chromosome... 115 1e-22
5dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 115 1e-22
6dbj|AK106699.1| Oryza sativa (japonica cultivar-group) cDNA clon... 115 1e-22
7ref|NM_192393.1| Oryza sativa (japonica cultivar-group), predic... 78 3e-11
8dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 78 3e-11
9dbj|AP003710.3| Oryza sativa (japonica cultivar-group) genomic D... 78 3e-11
10ref|XM_475909.1| Oryza sativa (japonica cultivar-group), predic... 62 2e-06
11ref|NM_192379.1| Oryza sativa (japonica cultivar-group), predic... 52 0.002
12dbj|AP003792.4| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
13dbj|AK102737.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.002
14ref|XM_470493.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.6
15gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 1.6
16gb|AC096690.5| Oryza sativa chromosome 3 BAC OSJNBa0059G06 genom... 42 1.6
17dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
18dbj|AK102968.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.6
19dbj|AK063136.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.6
20gb|AC166821.2| Mus musculus BAC clone RP24-68F22 from chromosome... 40 6.2
21ref|NM_192374.1| Oryza sativa (japonica cultivar-group), predic... 40 6.2
22ref|NM_192373.1| Oryza sativa (japonica cultivar-group), predic... 40 6.2
23gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome 40 6.2
24gb|AC125531.3| Mus musculus BAC clone RP23-396D12 from chromosom... 40 6.2
25emb|AL354706.11| Human DNA sequence from clone RP11-229I7 on chr... 40 6.2
26emb|AL603702.14| Mouse DNA sequence from clone RP23-406A14 on ch... 40 6.2
27gb|AF403051.1|AF403051 Pseudorabies virus strain Fa glycoprotein... 40 6.2
28tpg|BK001744.1| TPA: TPA_exp: Suid herpesvirus 1, complete genome 40 6.2
29gb|AC133106.3| Homo sapiens BAC clone RP11-634B17 from 2, comple... 40 6.2
30gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 6.2
31gb|AF158090.1|AF158090 Pseudorabies virus glycoprotein C (gC) ge... 40 6.2
32emb|CR388379.15| Zebrafish DNA sequence from clone CH211-129O15,... 40 6.2
33gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome 40 6.2
34gb|M12778.1|SH1GGIII Pseudorabies virus (PRV) glycoprotein gIII ... 40 6.2
35dbj|D49437.1|SH1GGIII3 Pseudorabies virus DNA for glycoprotein g... 40 6.2
36dbj|D49436.1|SH1GGIII2 Pseudorabies virus DNA for glycoprotein g... 40 6.2
37dbj|D49435.1|SH1GGIII1 Pseudorabies virus DNA for glycoprotein g... 40 6.2 
>gb|U43495.1|HVU43495 Hordeum vulgare jasmonate-induced mRNA, partial 3' sequence
          Length = 779

 Score =  886 bits (447), Expect = 0.0
 Identities = 450/451 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtcgaggagaagtgtttccatcatattcatgtgttgctcatgcatagtgtatattgttgg 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 778 gtcgaggagaagtgtttccatcatattcatgtgtcgctcatgcatagtgtatattgttgg 719

                                                                       
Query: 61  aaacattcacttattttgcataaaatgggaaatatactaggaacggtcgacaaaccgtaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 aaacattcacttattttgcataaaatgggaaatatactaggaacggtcgacaaaccgtaa 659

                                                                       
Query: 121 gccgttatttagaacctcggtcttggcaacgagcacagcgccgtgaatcacatcaacgcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 gccgttatttagaacctcggtcttggcaacgagcacagcgccgtgaatcacatcaacgcc 599

                                                                       
Query: 181 cactctcctcctagtgaatggccgatgcgagtaacttaacttagatgtgcttgaagtcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 cactctcctcctagtgaatggccgatgcgagtaacttaacttagatgtgcttgaagtcct 539

                                                                       
Query: 241 ggagcgtccatcgcccatctccccccttgaccatgaacttgtgcttcggcacccaccagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 ggagcgtccatcgcccatctccccccttgaccatgaacttgtgcttcggcacccaccagc 479

                                                                       
Query: 301 tcgccggcaccgggtgctcgtccgcgagcgcatcggcacccttgttcaccagcgctatgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 tcgccggcaccgggtgctcgtccgcgagcgcatcggcacccttgttcaccagcgctatgt 419

                                                                       
Query: 361 cacggtccacctcgagcttgaaccctccggcactgccctgctccccggccaccccgtgca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 cacggtccacctcgagcttgaaccctccggcactgccctgctccccggccaccccgtgca 359

                                          
Query: 421 ggtagcactcgaggttgtggagcgtccccac 451
           |||||||||||||||||||||||||||||||
Sbjct: 358 ggtagcactcgaggttgtggagcgtccccac 328
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>ref|XM_475910.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1224

 Score =  115 bits (58), Expect = 1e-22
 Identities = 151/182 (82%)
 Strand = Plus / Minus

                                                                        
Query: 265  ccttgaccatgaacttgtgcttcggcacccaccagctcgccggcaccgggtgctcgtccg 324
            ||||||||||| || ||| ||| |  |||||||| |  | |||||| |||| || |||| 
Sbjct: 1180 ccttgaccatgcacctgttcttggagacccaccaccggggcggcacggggtacttgtcct 1121

                                                                        
Query: 325  cgagcgcatcggcacccttgttcaccagcgctatgtcacggtccacctcgagcttgaacc 384
             |||||| ||| | ||||||||| ||||||| | ||| ||||| ||||| ||||||||||
Sbjct: 1120 tgagcgcgtcgacgcccttgttcgccagcgcgacgtcgcggtcgacctccagcttgaacc 1061

                                                                        
Query: 385  ctccggcactgccctgctccccggccaccccgtgcaggtagcactcgaggttgtggagcg 444
            | ||||| ||||||||||| ||||| || ||||| |||||||||||||||||||| ||||
Sbjct: 1060 cgccggcgctgccctgctcgccggcgacgccgtggaggtagcactcgaggttgtgcagcg 1001

              
Query: 445  tc 446
            ||
Sbjct: 1000 tc 999
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>gb|AC104284.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1735_C10,
              complete sequence
          Length = 187034

 Score =  115 bits (58), Expect = 1e-22
 Identities = 151/182 (82%)
 Strand = Plus / Plus

                                                                          
Query: 265    ccttgaccatgaacttgtgcttcggcacccaccagctcgccggcaccgggtgctcgtccg 324
              ||||||||||| || ||| ||| |  |||||||| |  | |||||| |||| || |||| 
Sbjct: 163111 ccttgaccatgcacctgttcttggagacccaccaccggggcggcacggggtacttgtcct 163170

                                                                          
Query: 325    cgagcgcatcggcacccttgttcaccagcgctatgtcacggtccacctcgagcttgaacc 384
               |||||| ||| | ||||||||| ||||||| | ||| ||||| ||||| ||||||||||
Sbjct: 163171 tgagcgcgtcgacgcccttgttcgccagcgcgacgtcgcggtcgacctccagcttgaacc 163230

                                                                          
Query: 385    ctccggcactgccctgctccccggccaccccgtgcaggtagcactcgaggttgtggagcg 444
              | ||||| ||||||||||| ||||| || ||||| |||||||||||||||||||| ||||
Sbjct: 163231 cgccggcgctgccctgctcgccggcgacgccgtggaggtagcactcgaggttgtgcagcg 163290

                
Query: 445    tc 446
              ||
Sbjct: 163291 tc 163292



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 34/35 (97%)
 Strand = Plus / Minus

                                                 
Query: 405    ccggccaccccgtgcaggtagcactcgaggttgtg 439
              |||||||| ||||||||||||||||||||||||||
Sbjct: 162599 ccggccacgccgtgcaggtagcactcgaggttgtg 162565
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>gb|AC098832.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1268_B08,
             complete sequence
          Length = 119500

 Score =  115 bits (58), Expect = 1e-22
 Identities = 151/182 (82%)
 Strand = Plus / Plus

                                                                         
Query: 265   ccttgaccatgaacttgtgcttcggcacccaccagctcgccggcaccgggtgctcgtccg 324
             ||||||||||| || ||| ||| |  |||||||| |  | |||||| |||| || |||| 
Sbjct: 13793 ccttgaccatgcacctgttcttggagacccaccaccggggcggcacggggtacttgtcct 13852

                                                                         
Query: 325   cgagcgcatcggcacccttgttcaccagcgctatgtcacggtccacctcgagcttgaacc 384
              |||||| ||| | ||||||||| ||||||| | ||| ||||| ||||| ||||||||||
Sbjct: 13853 tgagcgcgtcgacgcccttgttcgccagcgcgacgtcgcggtcgacctccagcttgaacc 13912

                                                                         
Query: 385   ctccggcactgccctgctccccggccaccccgtgcaggtagcactcgaggttgtggagcg 444
             | ||||| ||||||||||| ||||| || ||||| |||||||||||||||||||| ||||
Sbjct: 13913 cgccggcgctgccctgctcgccggcgacgccgtggaggtagcactcgaggttgtgcagcg 13972

               
Query: 445   tc 446
             ||
Sbjct: 13973 tc 13974



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 34/35 (97%)
 Strand = Plus / Minus

                                                
Query: 405   ccggccaccccgtgcaggtagcactcgaggttgtg 439
             |||||||| ||||||||||||||||||||||||||
Sbjct: 13281 ccggccacgccgtgcaggtagcactcgaggttgtg 13247
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  115 bits (58), Expect = 1e-22
 Identities = 151/182 (82%)
 Strand = Plus / Plus

                                                                            
Query: 265      ccttgaccatgaacttgtgcttcggcacccaccagctcgccggcaccgggtgctcgtccg 324
                ||||||||||| || ||| ||| |  |||||||| |  | |||||| |||| || |||| 
Sbjct: 28378869 ccttgaccatgcacctgttcttggagacccaccaccggggcggcacggggtacttgtcct 28378928

                                                                            
Query: 325      cgagcgcatcggcacccttgttcaccagcgctatgtcacggtccacctcgagcttgaacc 384
                 |||||| ||| | ||||||||| ||||||| | ||| ||||| ||||| ||||||||||
Sbjct: 28378929 tgagcgcgtcgacgcccttgttcgccagcgcgacgtcgcggtcgacctccagcttgaacc 28378988

                                                                            
Query: 385      ctccggcactgccctgctccccggccaccccgtgcaggtagcactcgaggttgtggagcg 444
                | ||||| ||||||||||| ||||| || ||||| |||||||||||||||||||| ||||
Sbjct: 28378989 cgccggcgctgccctgctcgccggcgacgccgtggaggtagcactcgaggttgtgcagcg 28379048

                  
Query: 445      tc 446
                ||
Sbjct: 28379049 tc 28379050



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 34/35 (97%)
 Strand = Plus / Minus

                                                   
Query: 405      ccggccaccccgtgcaggtagcactcgaggttgtg 439
                |||||||| ||||||||||||||||||||||||||
Sbjct: 28378357 ccggccacgccgtgcaggtagcactcgaggttgtg 28378323
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>dbj|AK106699.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-114-E01, full
            insert sequence
          Length = 1526

 Score =  115 bits (58), Expect = 1e-22
 Identities = 151/182 (82%)
 Strand = Plus / Minus

                                                                        
Query: 265  ccttgaccatgaacttgtgcttcggcacccaccagctcgccggcaccgggtgctcgtccg 324
            ||||||||||| || ||| ||| |  |||||||| |  | |||||| |||| || |||| 
Sbjct: 1264 ccttgaccatgcacctgttcttggagacccaccaccggggcggcacggggtacttgtcct 1205

                                                                        
Query: 325  cgagcgcatcggcacccttgttcaccagcgctatgtcacggtccacctcgagcttgaacc 384
             |||||| ||| | ||||||||| ||||||| | ||| ||||| ||||| ||||||||||
Sbjct: 1204 tgagcgcgtcgacgcccttgttcgccagcgcgacgtcgcggtcgacctccagcttgaacc 1145

                                                                        
Query: 385  ctccggcactgccctgctccccggccaccccgtgcaggtagcactcgaggttgtggagcg 444
            | ||||| ||||||||||| ||||| || ||||| |||||||||||||||||||| ||||
Sbjct: 1144 cgccggcgctgccctgctcgccggcgacgccgtggaggtagcactcgaggttgtgcagcg 1085

              
Query: 445  tc 446
            ||
Sbjct: 1084 tc 1083
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>ref|NM_192393.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1458

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 84/99 (84%)
 Strand = Plus / Minus

                                                                        
Query: 341  cttgttcaccagcgctatgtcacggtccacctcgagcttgaaccctccggcactgccctg 400
            ||||||||||||||| | ||| ||||| ||||| ||||||||||| |||    |||||||
Sbjct: 1320 cttgttcaccagcgccacgtcccggtcgacctccagcttgaacccgccgcgcttgccctg 1261

                                                   
Query: 401  ctccccggccaccccgtgcaggtagcactcgaggttgtg 439
            | ||||||| || ||||||| ||||||||||||| ||||
Sbjct: 1260 cgccccggcgacgccgtgcatgtagcactcgaggctgtg 1222
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 84/99 (84%)
 Strand = Plus / Plus

                                                                            
Query: 341      cttgttcaccagcgctatgtcacggtccacctcgagcttgaaccctccggcactgccctg 400
                ||||||||||||||| | ||| ||||| ||||| ||||||||||| |||    |||||||
Sbjct: 26377149 cttgttcaccagcgccacgtcccggtcgacctccagcttgaacccgccgcgcttgccctg 26377208

                                                       
Query: 401      ctccccggccaccccgtgcaggtagcactcgaggttgtg 439
                | ||||||| || ||||||| ||||||||||||| ||||
Sbjct: 26377209 cgccccggcgacgccgtgcatgtagcactcgaggctgtg 26377247



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 59/70 (84%)
 Strand = Plus / Minus

                                                                            
Query: 302      cgccggcaccgggtgctcgtccgcgagcgcatcggcacccttgttcaccagcgctatgtc 361
                |||||||||| ||| |||||||  |||||| ||  |  |||||||||||||||| | |||
Sbjct: 26317752 cgccggcacctggtactcgtccctgagcgcgtccacttccttgttcaccagcgccaggtc 26317693

                          
Query: 362      acggtccacc 371
                ||||||||||
Sbjct: 26317692 acggtccacc 26317683



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                         
Query: 415      cgtgcaggtagcactcgaggttgtg 439
                |||||||||||||||||||||||||
Sbjct: 26317633 cgtgcaggtagcactcgaggttgtg 26317609



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                                
Query: 404      cccggccaccccgtgcaggtagcactcgaggt 435
                |||||| || |||||||||| |||||||||||
Sbjct: 26295965 cccggcgacgccgtgcaggtggcactcgaggt 26295934



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                        
Query: 375      agcttgaaccctccggcactgccctgctccccggccaccccgtgcaggtagcactc 430
                |||||||||||||||   || ||||||  |||||| ||||| |||| |||||||||
Sbjct: 26291708 agcttgaaccctccgttgctcccctgcgtcccggcaaccccatgcatgtagcactc 26291653
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>dbj|AP003710.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBb0032K15
          Length = 126195

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 84/99 (84%)
 Strand = Plus / Plus

                                                                         
Query: 341   cttgttcaccagcgctatgtcacggtccacctcgagcttgaaccctccggcactgccctg 400
             ||||||||||||||| | ||| ||||| ||||| ||||||||||| |||    |||||||
Sbjct: 51014 cttgttcaccagcgccacgtcccggtcgacctccagcttgaacccgccgcgcttgccctg 51073

                                                    
Query: 401   ctccccggccaccccgtgcaggtagcactcgaggttgtg 439
             | ||||||| || ||||||| ||||||||||||| ||||
Sbjct: 51074 cgccccggcgacgccgtgcatgtagcactcgaggctgtg 51112
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>ref|XM_475909.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1236

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 34/35 (97%)
 Strand = Plus / Minus

                                               
Query: 405  ccggccaccccgtgcaggtagcactcgaggttgtg 439
            |||||||| ||||||||||||||||||||||||||
Sbjct: 1034 ccggccacgccgtgcaggtagcactcgaggttgtg 1000
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>ref|NM_192379.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1263

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 59/70 (84%)
 Strand = Plus / Minus

                                                                        
Query: 302  cgccggcaccgggtgctcgtccgcgagcgcatcggcacccttgttcaccagcgctatgtc 361
            |||||||||| ||| |||||||  |||||| ||  |  |||||||||||||||| | |||
Sbjct: 1170 cgccggcacctggtactcgtccctgagcgcgtccacttccttgttcaccagcgccaggtc 1111

                      
Query: 362  acggtccacc 371
            ||||||||||
Sbjct: 1110 acggtccacc 1101



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                     
Query: 415  cgtgcaggtagcactcgaggttgtg 439
            |||||||||||||||||||||||||
Sbjct: 1051 cgtgcaggtagcactcgaggttgtg 1027
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>dbj|AP003792.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OJ1159_D09
          Length = 147770

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 59/70 (84%)
 Strand = Plus / Minus

                                                                          
Query: 302    cgccggcaccgggtgctcgtccgcgagcgcatcggcacccttgttcaccagcgctatgtc 361
              |||||||||| ||| |||||||  |||||| ||  |  |||||||||||||||| | |||
Sbjct: 130433 cgccggcacctggtactcgtccctgagcgcgtccacttccttgttcaccagcgccaggtc 130374

                        
Query: 362    acggtccacc 371
              ||||||||||
Sbjct: 130373 acggtccacc 130364



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                       
Query: 415    cgtgcaggtagcactcgaggttgtg 439
              |||||||||||||||||||||||||
Sbjct: 130314 cgtgcaggtagcactcgaggttgtg 130290



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 404    cccggccaccccgtgcaggtagcactcgaggt 435
              |||||| || |||||||||| |||||||||||
Sbjct: 108646 cccggcgacgccgtgcaggtggcactcgaggt 108615



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                      
Query: 375    agcttgaaccctccggcactgccctgctccccggccaccccgtgcaggtagcactc 430
              |||||||||||||||   || ||||||  |||||| ||||| |||| |||||||||
Sbjct: 104389 agcttgaaccctccgttgctcccctgcgtcccggcaaccccatgcatgtagcactc 104334
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>dbj|AK102737.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033106C14, full
            insert sequence
          Length = 1577

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 59/70 (84%)
 Strand = Plus / Minus

                                                                        
Query: 302  cgccggcaccgggtgctcgtccgcgagcgcatcggcacccttgttcaccagcgctatgtc 361
            |||||||||| ||| |||||||  |||||| ||  |  |||||||||||||||| | |||
Sbjct: 1302 cgccggcacctggtactcgtccctgagcgcgtccacttccttgttcaccagcgccaggtc 1243

                      
Query: 362  acggtccacc 371
            ||||||||||
Sbjct: 1242 acggtccacc 1233



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                     
Query: 415  cgtgcaggtagcactcgaggttgtg 439
            |||||||||||||||||||||||||
Sbjct: 1183 cgtgcaggtagcactcgaggttgtg 1159
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>ref|XM_470493.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1724

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 248 ccatcgcccatctcccccctt 268
           |||||||||||||||||||||
Sbjct: 176 ccatcgcccatctcccccctt 196
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 248      ccatcgcccatctcccccctt 268
                |||||||||||||||||||||
Sbjct: 35925005 ccatcgcccatctcccccctt 35925025
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>gb|AC096690.5| Oryza sativa chromosome 3 BAC OSJNBa0059G06 genomic sequence, complete
             sequence
          Length = 145115

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 248   ccatcgcccatctcccccctt 268
             |||||||||||||||||||||
Sbjct: 36120 ccatcgcccatctcccccctt 36100
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 248      ccatcgcccatctcccccctt 268
                |||||||||||||||||||||
Sbjct: 36015135 ccatcgcccatctcccccctt 36015155
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>dbj|AK102968.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033115J18, full
           insert sequence
          Length = 1749

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 248 ccatcgcccatctcccccctt 268
           |||||||||||||||||||||
Sbjct: 196 ccatcgcccatctcccccctt 216
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>dbj|AK063136.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-111-G02, full
           insert sequence
          Length = 705

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                        
Query: 341 cttgttcaccagcgctatgtcacggtccacctcgagcttgaaccc 385
           ||||||||||||| | | ||| ||||| ||||| |||||||||||
Sbjct: 409 cttgttcaccagctccacgtcccggtcgacctccagcttgaaccc 365
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>gb|AC166821.2| Mus musculus BAC clone RP24-68F22 from chromosome 17, complete sequence
          Length = 202649

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 437    gtggagcgtccccaccgtgg 456
              ||||||||||||||||||||
Sbjct: 103310 gtggagcgtccccaccgtgg 103291
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>ref|NM_192374.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1212

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 404  cccggccaccccgtgcaggtagcactcgaggt 435
            |||||| || |||||||||| |||||||||||
Sbjct: 1002 cccggcgacgccgtgcaggtggcactcgaggt 971
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>ref|NM_192373.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1197

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                    
Query: 375  agcttgaaccctccggcactgccctgctccccggccaccccgtgcaggtagcactc 430
            |||||||||||||||   || ||||||  |||||| ||||| |||| |||||||||
Sbjct: 1040 agcttgaaccctccgttgctcccctgcgtcccggcaaccccatgcatgtagcactc 985
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>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome
          Length = 2467205

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 382    accctccggcactgccctgc 401
              ||||||||||||||||||||
Sbjct: 882978 accctccggcactgccctgc 882959
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>gb|AC125531.3| Mus musculus BAC clone RP23-396D12 from chromosome 10, complete
             sequence
          Length = 219818

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 73    attttgcataaaatgggaaa 92
             ||||||||||||||||||||
Sbjct: 73416 attttgcataaaatgggaaa 73435
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>emb|AL354706.11| Human DNA sequence from clone RP11-229I7 on chromosome 13, complete
             sequence
          Length = 96045

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 66    ttcacttattttgcataaaa 85
             ||||||||||||||||||||
Sbjct: 29584 ttcacttattttgcataaaa 29603
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>emb|AL603702.14| Mouse DNA sequence from clone RP23-406A14 on chromosome 11 Contains a
             protease (prosome, macropain) 26S subunit ATPase 1 (Psmc1)
             pseudogene and a CpG island, complete sequence
          Length = 197265

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 383   ccctccggcactgccctgctccccggcc 410
             ||||||| | ||||||||||||||||||
Sbjct: 31650 ccctccgcccctgccctgctccccggcc 31623
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>gb|AF403051.1|AF403051 Pseudorabies virus strain Fa glycoprotein C gene, complete cds
          Length = 1562

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 308 caccgggtgctcgtccgcga 327
           ||||||||||||||||||||
Sbjct: 916 caccgggtgctcgtccgcga 897
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>tpg|BK001744.1| TPA: TPA_exp: Suid herpesvirus 1, complete genome
          Length = 143461

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 308   caccgggtgctcgtccgcga 327
             ||||||||||||||||||||
Sbjct: 54862 caccgggtgctcgtccgcga 54843
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>gb|AC133106.3| Homo sapiens BAC clone RP11-634B17 from 2, complete sequence
          Length = 109568

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 81    taaaatgggaaatatactag 100
             ||||||||||||||||||||
Sbjct: 81268 taaaatgggaaatatactag 81249
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 309     accgggtgctcgtccgcgag 328
               ||||||||||||||||||||
Sbjct: 4606525 accgggtgctcgtccgcgag 4606506
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>gb|AF158090.1|AF158090 Pseudorabies virus glycoprotein C (gC) gene, complete cds
          Length = 1755

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 308  caccgggtgctcgtccgcga 327
            ||||||||||||||||||||
Sbjct: 1059 caccgggtgctcgtccgcga 1040
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>emb|CR388379.15| Zebrafish DNA sequence from clone CH211-129O15, complete sequence
          Length = 149807

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 60     gaaacattcacttattttgc 79
              ||||||||||||||||||||
Sbjct: 101727 gaaacattcacttattttgc 101708
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>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome
          Length = 7215267

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 193     agtgaatggccgatgcgagt 212
               ||||||||||||||||||||
Sbjct: 6301611 agtgaatggccgatgcgagt 6301630
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>gb|M12778.1|SH1GGIII Pseudorabies virus (PRV) glycoprotein gIII mRNA, complete cds
          Length = 1722

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 308  caccgggtgctcgtccgcga 327
            ||||||||||||||||||||
Sbjct: 1029 caccgggtgctcgtccgcga 1010
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>dbj|D49437.1|SH1GGIII3 Pseudorabies virus DNA for glycoprotein gIII, complete cds
          Length = 1584

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 308 caccgggtgctcgtccgcga 327
           ||||||||||||||||||||
Sbjct: 919 caccgggtgctcgtccgcga 900
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>dbj|D49436.1|SH1GGIII2 Pseudorabies virus DNA for glycoprotein gIII, complete cds
          Length = 1579

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 308 caccgggtgctcgtccgcga 327
           ||||||||||||||||||||
Sbjct: 916 caccgggtgctcgtccgcga 897
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>dbj|D49435.1|SH1GGIII1 Pseudorabies virus DNA for glycoprotein gIII, complete cds
          Length = 1584

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 308 caccgggtgctcgtccgcga 327
           ||||||||||||||||||||
Sbjct: 919 caccgggtgctcgtccgcga 900


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,131,025
Number of Sequences: 3902068
Number of extensions: 3131025
Number of successful extensions: 66725
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66433
Number of HSP's gapped (non-prelim): 287
length of query: 458
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 436
effective length of database: 17,147,199,772
effective search space: 7476179100592
effective search space used: 7476179100592
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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