ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart07d06 |
|---|---|
| Clone Library Name | barley_pub |
>RPB5_CAEEL (Q9N5K2) DNA-directed RNA polymerases II 24 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase II subunit 5) Length = 211 Score = 41.2 bits (95), Expect = 6e-04 Identities = 18/28 (64%), Positives = 22/28 (78%) Frame = -2 Query: 381 YGMKRGQVVKITRKSEVAGEYETYRYVI 298 +G++RGQVVKI R SE AG Y TYR V+ Sbjct: 184 FGLRRGQVVKIIRPSETAGRYITYRLVV 211
>RPB5_PONPY (Q5R587) DNA-directed RNA polymerase II 23 kDa polypeptide (EC| 2.7.7.6) (RPB25) (RPB5) (RPABC1) Length = 210 Score = 40.8 bits (94), Expect = 8e-04 Identities = 19/27 (70%), Positives = 21/27 (77%) Frame = -2 Query: 381 YGMKRGQVVKITRKSEVAGEYETYRYV 301 +G+KRGQVVKI R SE AG Y TYR V Sbjct: 183 FGIKRGQVVKIIRPSETAGRYITYRLV 209
>RPB5_MOUSE (Q80UW8) DNA-directed RNA polymerase II 23 kDa polypeptide (EC| 2.7.7.6) (RPB25) (RPB5) (RPABC1) Length = 210 Score = 40.8 bits (94), Expect = 8e-04 Identities = 19/27 (70%), Positives = 21/27 (77%) Frame = -2 Query: 381 YGMKRGQVVKITRKSEVAGEYETYRYV 301 +G+KRGQVVKI R SE AG Y TYR V Sbjct: 183 FGIKRGQVVKIIRPSETAGRYITYRLV 209
>RPB5_HUMAN (P19388) DNA-directed RNA polymerase II 23 kDa polypeptide (EC| 2.7.7.6) (RPB25) (RPB5) (RPABC1) (XAP4) Length = 210 Score = 40.8 bits (94), Expect = 8e-04 Identities = 19/27 (70%), Positives = 21/27 (77%) Frame = -2 Query: 381 YGMKRGQVVKITRKSEVAGEYETYRYV 301 +G+KRGQVVKI R SE AG Y TYR V Sbjct: 183 FGIKRGQVVKIIRPSETAGRYITYRLV 209
>RPB5_CANGA (Q6FQA6) DNA-directed RNA polymerases II 24 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase II subunit 5) Length = 215 Score = 39.3 bits (90), Expect = 0.002 Identities = 17/24 (70%), Positives = 20/24 (83%) Frame = -2 Query: 378 GMKRGQVVKITRKSEVAGEYETYR 307 G+KRG+VVKI RKSE AG Y +YR Sbjct: 189 GLKRGEVVKIIRKSETAGRYASYR 212
>RPB5_YEAST (P20434) DNA-directed RNA polymerases I, II, and III 27 kDa| polypeptide (EC 2.7.7.6) (ABC27) Length = 215 Score = 38.1 bits (87), Expect = 0.005 Identities = 16/24 (66%), Positives = 20/24 (83%) Frame = -2 Query: 378 GMKRGQVVKITRKSEVAGEYETYR 307 G+KRG+VVKI RKSE +G Y +YR Sbjct: 189 GLKRGEVVKIIRKSETSGRYASYR 212
>RPB5_ASHGO (Q757H7) DNA-directed RNA polymerases II 24 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase II subunit 5) Length = 215 Score = 38.1 bits (87), Expect = 0.005 Identities = 16/24 (66%), Positives = 20/24 (83%) Frame = -2 Query: 378 GMKRGQVVKITRKSEVAGEYETYR 307 G+KRG+VVKI RKSE +G Y +YR Sbjct: 189 GLKRGEVVKIIRKSETSGRYASYR 212
>RPB5_KLUMA (Q9P4B9) DNA-directed RNA polymerases II 24 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase II subunit 5) Length = 215 Score = 37.7 bits (86), Expect = 0.007 Identities = 15/24 (62%), Positives = 20/24 (83%) Frame = -2 Query: 378 GMKRGQVVKITRKSEVAGEYETYR 307 G+KRG+V+KI RKSE +G Y +YR Sbjct: 189 GLKRGEVIKIIRKSETSGRYASYR 212
>RPB5_KLULA (Q6CJ62) DNA-directed RNA polymerases II 24 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase II subunit 5) Length = 215 Score = 37.7 bits (86), Expect = 0.007 Identities = 15/24 (62%), Positives = 20/24 (83%) Frame = -2 Query: 378 GMKRGQVVKITRKSEVAGEYETYR 307 G+KRG+V+KI RKSE +G Y +YR Sbjct: 189 GLKRGEVIKIIRKSETSGRYASYR 212
>RPB5_SCHPO (Q09191) DNA-directed RNA polymerases II 24 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase II subunit 5) Length = 210 Score = 37.7 bits (86), Expect = 0.007 Identities = 15/24 (62%), Positives = 20/24 (83%) Frame = -2 Query: 378 GMKRGQVVKITRKSEVAGEYETYR 307 G+KRG+VVKI R+SE +G Y +YR Sbjct: 184 GLKRGEVVKIVRRSETSGRYNSYR 207
>RPOH_SULTO (Q976A3) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)| Length = 84 Score = 37.4 bits (85), Expect = 0.009 Identities = 16/27 (59%), Positives = 20/27 (74%) Frame = -2 Query: 378 GMKRGQVVKITRKSEVAGEYETYRYVI 298 G K G ++KITRKS ++GE YRYVI Sbjct: 56 GAKPGDIIKITRKSSLSGEVVVYRYVI 82
>RPOH_SULAC (P11521) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)| Length = 84 Score = 37.4 bits (85), Expect = 0.009 Identities = 17/27 (62%), Positives = 19/27 (70%) Frame = -2 Query: 378 GMKRGQVVKITRKSEVAGEYETYRYVI 298 G K G ++KITRKS GE TYRYVI Sbjct: 56 GAKPGDIIKITRKSPFTGESVTYRYVI 82
>RPB5_DEBHA (Q6BIJ0) DNA-directed RNA polymerases II 24 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase II subunit 5) Length = 214 Score = 37.0 bits (84), Expect = 0.012 Identities = 15/24 (62%), Positives = 20/24 (83%) Frame = -2 Query: 378 GMKRGQVVKITRKSEVAGEYETYR 307 G+KRG+VVKI R+SE +G Y +YR Sbjct: 188 GLKRGEVVKIIRRSETSGRYASYR 211
>RPB5_YARLI (Q6CA26) DNA-directed RNA polymerases II 24 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase II subunit 5) Length = 212 Score = 36.6 bits (83), Expect = 0.015 Identities = 14/24 (58%), Positives = 20/24 (83%) Frame = -2 Query: 378 GMKRGQVVKITRKSEVAGEYETYR 307 G++RGQ+VKI R+SE +G Y +YR Sbjct: 186 GLRRGQIVKIIRRSETSGRYASYR 209
>RPOH_METTH (O27122) DNA-directed RNA polymerase subunit H (EC 2.7.7.6) (RPB5)| Length = 77 Score = 34.3 bits (77), Expect = 0.075 Identities = 16/26 (61%), Positives = 18/26 (69%) Frame = -2 Query: 378 GMKRGQVVKITRKSEVAGEYETYRYV 301 G KRG +VKI RKS A E+ TYR V Sbjct: 50 GAKRGDIVKIIRKSPTAEEFVTYRLV 75
>RPOH_METMA (Q8PUQ8) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)| Length = 78 Score = 33.9 bits (76), Expect = 0.098 Identities = 16/23 (69%), Positives = 18/23 (78%) Frame = -2 Query: 366 GQVVKITRKSEVAGEYETYRYVI 298 G VVKITRKS+ AGE + YR VI Sbjct: 55 GDVVKITRKSQTAGEADYYRLVI 77
>RPOH_METVA (P41559) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)| Length = 78 Score = 32.7 bits (73), Expect = 0.22 Identities = 15/27 (55%), Positives = 19/27 (70%) Frame = -2 Query: 378 GMKRGQVVKITRKSEVAGEYETYRYVI 298 G K G +VKITRKS+ AGE +R V+ Sbjct: 48 GAKVGDIVKITRKSQTAGETVYFRLVV 74
>RPOH_METAC (Q8TRB4) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)| Length = 78 Score = 32.7 bits (73), Expect = 0.22 Identities = 15/23 (65%), Positives = 18/23 (78%) Frame = -2 Query: 366 GQVVKITRKSEVAGEYETYRYVI 298 G VV+ITRKS+ AGE + YR VI Sbjct: 55 GDVVRITRKSQTAGEADYYRLVI 77
>RPOH_ARCFU (O28394) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)| Length = 76 Score = 32.7 bits (73), Expect = 0.22 Identities = 16/27 (59%), Positives = 18/27 (66%) Frame = -2 Query: 378 GMKRGQVVKITRKSEVAGEYETYRYVI 298 G K G +VKITRKS AGE YR V+ Sbjct: 50 GAKPGDIVKITRKSLTAGESVFYRLVV 76
>RPOH_SULSO (Q980Q9) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)| Length = 84 Score = 32.0 bits (71), Expect = 0.37 Identities = 13/25 (52%), Positives = 19/25 (76%) Frame = -2 Query: 372 KRGQVVKITRKSEVAGEYETYRYVI 298 K G +++I RKS++ GE +YRYVI Sbjct: 58 KPGDIIRIIRKSQLYGEVVSYRYVI 82
>RPOH_AERPE (Q9YAT3) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)| Length = 90 Score = 30.8 bits (68), Expect = 0.83 Identities = 12/25 (48%), Positives = 19/25 (76%) Frame = -2 Query: 372 KRGQVVKITRKSEVAGEYETYRYVI 298 K G +++ITR+S AGE + YR+V+ Sbjct: 59 KPGDIIEITRRSYTAGEAKYYRFVV 83
>RPOH_PYRAE (Q8ZYR0) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)| Length = 75 Score = 30.0 bits (66), Expect = 1.4 Identities = 14/27 (51%), Positives = 17/27 (62%) Frame = -2 Query: 378 GMKRGQVVKITRKSEVAGEYETYRYVI 298 G K G V+KI R+S AGE YR V+ Sbjct: 47 GAKPGDVLKIVRESPTAGEAVVYRLVV 73
>RPOH_METMP (P61519) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)| Length = 78 Score = 30.0 bits (66), Expect = 1.4 Identities = 16/27 (59%), Positives = 16/27 (59%) Frame = -2 Query: 378 GMKRGQVVKITRKSEVAGEYETYRYVI 298 G G VVKITR S AGE YR VI Sbjct: 48 GATPGDVVKITRMSPTAGESTYYRLVI 74
>RPOH_METJA (Q58443) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)| Length = 78 Score = 28.9 bits (63), Expect = 3.2 Identities = 14/27 (51%), Positives = 16/27 (59%) Frame = -2 Query: 378 GMKRGQVVKITRKSEVAGEYETYRYVI 298 G K G VV++ RKS AG YR VI Sbjct: 48 GAKEGDVVRVIRKSPTAGVSIAYRLVI 74
>ASCL2_ORYSA (Q6YWS8) ASC1-like protein 2 (Alternaria stem canker| resistance-like protein 2) Length = 303 Score = 28.9 bits (63), Expect = 3.2 Identities = 11/29 (37%), Positives = 20/29 (68%) Frame = -1 Query: 229 FLSV*SITVYRGTKMLAEAAWCPFVCNWS 143 FL + I+ Y G ++LA+ ++ FVC+W+ Sbjct: 188 FLELGKISKYSGYQLLADVSFLIFVCSWA 216
>GLGA_BACHD (Q9KDX6) Glycogen synthase (EC 2.4.1.21) (Starch [bacterial| glycogen] synthase) Length = 476 Score = 28.5 bits (62), Expect = 4.1 Identities = 19/74 (25%), Positives = 37/74 (50%) Frame = +1 Query: 154 KQRGTKLLQRASWFPDRP*CFKLRGISKGGTI*TPRTTSQALGML*GSNDVTVGLIFSGD 333 K++ +++QR P+R + +S+ +Q G L + +V + ++ +GD Sbjct: 267 KRKNKQVIQRLFELPERKDIPLIAMVSRLVEEKGVPLLTQIAGELVTTENVQLAILGTGD 326 Query: 334 FALPGDLHHLPTLH 375 +L LHHL +LH Sbjct: 327 PSLEDQLHHLASLH 340
>AHI1_MOUSE (Q8K3E5) Jouberin (Abelson helper integration site 1 protein) (AHI-1)| Length = 1047 Score = 27.7 bits (60), Expect = 7.0 Identities = 17/61 (27%), Positives = 28/61 (45%) Frame = +1 Query: 100 PRNLFLAYTLMSNCPTSYKQRGTKLLQRASWFPDRP*CFKLRGISKGGTI*TPRTTSQAL 279 P N + TL + P K+R L + P++P + + +SKG + PR Q + Sbjct: 953 PANHVASETLYRDSPPKVKERSPPLTPKEKTKPEKPLASQKQSLSKGRPL-DPRLGPQPV 1011 Query: 280 G 282 G Sbjct: 1012 G 1012
>CPS1_PENJA (P34946) Carboxypeptidase S1 (EC 3.4.16.6)| Length = 423 Score = 27.7 bits (60), Expect = 7.0 Identities = 13/31 (41%), Positives = 16/31 (51%) Frame = -1 Query: 229 FLSV*SITVYRGTKMLAEAAWCPFVCNWSGN 137 FLS S V G +L A ++CNW GN Sbjct: 318 FLSTLSSVVQSGINVLVWAGDADWICNWLGN 348
>ZF106_HUMAN (Q9H2Y7) Zinc finger protein 106 homolog (Zfp-106) (Zinc finger| protein 474) Length = 1883 Score = 27.3 bits (59), Expect = 9.2 Identities = 12/31 (38%), Positives = 18/31 (58%) Frame = +3 Query: 18 ISERTDPSHVYRQEFT*QFSSTEHSTSSEKP 110 +S++ DP ++ + T FS EHS S KP Sbjct: 463 LSQKQDPKNISKNTKTNFFSPGEHSNPSNKP 493
>DHE4_GIALA (P28724) NADP-specific glutamate dehydrogenase (EC 1.4.1.4)| (NADP-GDH) (NADP-dependent glutamate dehydrogenase) Length = 449 Score = 27.3 bits (59), Expect = 9.2 Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 17/59 (28%) Frame = +2 Query: 176 FSEHLGSPIDRDASN*EELA-----KEE------------PFELPEQPLKPWECCEAQM 301 FS+ G+ +D+D N E+LA K E P + KPWEC E QM Sbjct: 258 FSDSNGTIVDKDGFNEEKLAHLMYLKNEKRGRVSEFKDKYPSVAYYEGKKPWECFEGQM 316 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,802,106 Number of Sequences: 219361 Number of extensions: 916536 Number of successful extensions: 1910 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 1877 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1909 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 1396778976 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
