ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart07d04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1METZ_PSEAE (P55218) O-succinylhomoserine sulfhydrylase (EC 2.5.1... 34 0.16
2MEGL_PSEPU (P13254) Methionine gamma-lyase (EC 4.4.1.11) (L-meth... 33 0.27
3RF2_THEMA (Q9X1R5) Peptide chain release factor 2 (RF-2) 28 6.7
4ACOX_PICPA (Q9Y7B1) Acyl-coenzyme A oxidase (EC 1.3.3.6) (Acyl-C... 28 8.8

>METZ_PSEAE (P55218) O-succinylhomoserine sulfhydrylase (EC 2.5.1.-) (OSH|
           sulfhydrylase)
          Length = 403

 Score = 33.9 bits (76), Expect = 0.16
 Identities = 18/45 (40%), Positives = 26/45 (57%)
 Frame = -2

Query: 408 STSSEMDPEDRARAGISPGLIRMSVGYNGTXEQRWAQFERALALM 274
           ++   + PEDRARAGI   LIR++VG     + + A   R LA +
Sbjct: 360 TSHGRLSPEDRARAGIGDSLIRVAVGLEDLDDLK-ADMARGLAAL 403



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>MEGL_PSEPU (P13254) Methionine gamma-lyase (EC 4.4.1.11) (L-methioninase)|
          Length = 398

 Score = 33.1 bits (74), Expect = 0.27
 Identities = 15/25 (60%), Positives = 18/25 (72%)
 Frame = -2

Query: 405 TSSEMDPEDRARAGISPGLIRMSVG 331
           T S   PE+RA  GIS GL+R+SVG
Sbjct: 355 THSSYTPEERAHYGISEGLVRLSVG 379



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>RF2_THEMA (Q9X1R5) Peptide chain release factor 2 (RF-2)|
          Length = 369

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = +2

Query: 152 LSWG*E--EYIFLKYTMSRHHRFGGQTA 229
           +SWG +   YIF  YTM + HR G +TA
Sbjct: 316 ISWGNQIRSYIFHPYTMVKDHRTGVETA 343



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>ACOX_PICPA (Q9Y7B1) Acyl-coenzyme A oxidase (EC 1.3.3.6) (Acyl-CoA oxidase)|
          Length = 719

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -2

Query: 393 MDPEDRARAGISPGLIRMSVGYNGTXEQ-RWAQFERALALMQ 271
           +DP+   R G+  GL   ++  NGT EQ ++  FER  A ++
Sbjct: 106 VDPQLGTRVGVHLGLFLSAIRGNGTEEQFKYWAFERGAAYLK 147


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,072,360
Number of Sequences: 219361
Number of extensions: 615406
Number of successful extensions: 1150
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1150
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2278320915
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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