Clone Name | rbart07d01 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK119933.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-184-A09, full insert sequence Length = 1094 Score = 125 bits (63), Expect = 2e-26 Identities = 69/71 (97%) Strand = Plus / Minus Query: 1 gcgcgaaattatattttcacgagcaaacatgtacaccaaccaacacaaggcttggattca 60 |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| Sbjct: 1094 gcgcgaaattatattttcacgagcaaacatgtacacaaacaaacacaaggcttggattca 1035 Query: 61 aggctagctac 71 ||||||||||| Sbjct: 1034 aggctagctac 1024
>gb|AC138300.8| Mus musculus chromosome 14, clone RP23-187B20, complete sequence Length = 213955 Score = 38.2 bits (19), Expect = 2.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 27 acatgtacaccaaccaacacaag 49 ||||||||||||||| ||||||| Sbjct: 160136 acatgtacaccaacctacacaag 160158
>ref|NM_005512.1| Homo sapiens leucine rich repeat containing 32 (LRRC32), mRNA Length = 4163 Score = 38.2 bits (19), Expect = 2.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 43 acacaaggcttggattcaa 61 ||||||||||||||||||| Sbjct: 3002 acacaaggcttggattcaa 2984
>emb|Z24680.1|HSGARPGNA H.sapiens garp gene mRNA, complete CDS Length = 4163 Score = 38.2 bits (19), Expect = 2.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 43 acacaaggcttggattcaa 61 ||||||||||||||||||| Sbjct: 3002 acacaaggcttggattcaa 2984
>gb|BC070079.1| Homo sapiens leucine rich repeat containing 32, mRNA (cDNA clone MGC:87399 IMAGE:30344529), complete cds Length = 4218 Score = 38.2 bits (19), Expect = 2.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 43 acacaaggcttggattcaa 61 ||||||||||||||||||| Sbjct: 3049 acacaaggcttggattcaa 3031
>gb|BC052210.1| Homo sapiens leucine rich repeat containing 32, mRNA (cDNA clone MGC:41858 IMAGE:4825609), complete cds Length = 4218 Score = 38.2 bits (19), Expect = 2.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 43 acacaaggcttggattcaa 61 ||||||||||||||||||| Sbjct: 3045 acacaaggcttggattcaa 3027
>emb|CR618700.1| full-length cDNA clone CS0DN001YO13 of Adult brain of Homo sapiens (human) Length = 1523 Score = 38.2 bits (19), Expect = 2.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 43 acacaaggcttggattcaa 61 ||||||||||||||||||| Sbjct: 430 acacaaggcttggattcaa 412
>dbj|AP007171.1| Aspergillus oryzae RIB40 genomic DNA, SC011 Length = 2505489 Score = 38.2 bits (19), Expect = 2.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 50 gcttggattcaaggctagc 68 ||||||||||||||||||| Sbjct: 1725421 gcttggattcaaggctagc 1725439
>gb|AC155923.2| Mus musculus BAC clone RP24-488E11 from chromosome 9, complete sequence Length = 134932 Score = 38.2 bits (19), Expect = 2.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 47 aaggcttggattcaaggctagct 69 ||||| ||||||||||||||||| Sbjct: 132235 aaggcatggattcaaggctagct 132257
>dbj|AP001189.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-672A2, complete sequence Length = 186389 Score = 38.2 bits (19), Expect = 2.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 43 acacaaggcttggattcaa 61 ||||||||||||||||||| Sbjct: 103030 acacaaggcttggattcaa 103048
>gb|AC169127.3| Mus musculus BAC clone RP24-493G21 from chromosome 9, complete sequence Length = 156163 Score = 38.2 bits (19), Expect = 2.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 47 aaggcttggattcaaggctagct 69 ||||| ||||||||||||||||| Sbjct: 75717 aaggcatggattcaaggctagct 75695 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 728,508 Number of Sequences: 3902068 Number of extensions: 728508 Number of successful extensions: 49959 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 11 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 49941 Number of HSP's gapped (non-prelim): 18 length of query: 72 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 51 effective length of database: 17,151,101,840 effective search space: 874706193840 effective search space used: 874706193840 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)