ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart07d01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK119933.1| Oryza sativa (japonica cultivar-group) cDNA clon... 125 2e-26
2gb|AC138300.8| Mus musculus chromosome 14, clone RP23-187B20, co... 38 2.9
3ref|NM_005512.1| Homo sapiens leucine rich repeat containing 32 ... 38 2.9
4emb|Z24680.1|HSGARPGNA H.sapiens garp gene mRNA, complete CDS 38 2.9
5gb|BC070079.1| Homo sapiens leucine rich repeat containing 32, m... 38 2.9
6gb|BC052210.1| Homo sapiens leucine rich repeat containing 32, m... 38 2.9
7emb|CR618700.1| full-length cDNA clone CS0DN001YO13 of Adult bra... 38 2.9
8dbj|AP007171.1| Aspergillus oryzae RIB40 genomic DNA, SC011 38 2.9
9gb|AC155923.2| Mus musculus BAC clone RP24-488E11 from chromosom... 38 2.9
10dbj|AP001189.5| Homo sapiens genomic DNA, chromosome 11 clone:RP... 38 2.9
11gb|AC169127.3| Mus musculus BAC clone RP24-493G21 from chromosom... 38 2.9

>dbj|AK119933.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-184-A09, full
            insert sequence
          Length = 1094

 Score =  125 bits (63), Expect = 2e-26
 Identities = 69/71 (97%)
 Strand = Plus / Minus

                                                                        
Query: 1    gcgcgaaattatattttcacgagcaaacatgtacaccaaccaacacaaggcttggattca 60
            |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 1094 gcgcgaaattatattttcacgagcaaacatgtacacaaacaaacacaaggcttggattca 1035

                       
Query: 61   aggctagctac 71
            |||||||||||
Sbjct: 1034 aggctagctac 1024



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>gb|AC138300.8| Mus musculus chromosome 14, clone RP23-187B20, complete sequence
          Length = 213955

 Score = 38.2 bits (19), Expect = 2.9
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 27     acatgtacaccaaccaacacaag 49
              ||||||||||||||| |||||||
Sbjct: 160136 acatgtacaccaacctacacaag 160158



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>ref|NM_005512.1| Homo sapiens leucine rich repeat containing 32 (LRRC32), mRNA
          Length = 4163

 Score = 38.2 bits (19), Expect = 2.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 43   acacaaggcttggattcaa 61
            |||||||||||||||||||
Sbjct: 3002 acacaaggcttggattcaa 2984



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>emb|Z24680.1|HSGARPGNA H.sapiens garp gene mRNA, complete CDS
          Length = 4163

 Score = 38.2 bits (19), Expect = 2.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 43   acacaaggcttggattcaa 61
            |||||||||||||||||||
Sbjct: 3002 acacaaggcttggattcaa 2984



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>gb|BC070079.1| Homo sapiens leucine rich repeat containing 32, mRNA (cDNA clone
            MGC:87399 IMAGE:30344529), complete cds
          Length = 4218

 Score = 38.2 bits (19), Expect = 2.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 43   acacaaggcttggattcaa 61
            |||||||||||||||||||
Sbjct: 3049 acacaaggcttggattcaa 3031



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>gb|BC052210.1| Homo sapiens leucine rich repeat containing 32, mRNA (cDNA clone
            MGC:41858 IMAGE:4825609), complete cds
          Length = 4218

 Score = 38.2 bits (19), Expect = 2.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 43   acacaaggcttggattcaa 61
            |||||||||||||||||||
Sbjct: 3045 acacaaggcttggattcaa 3027



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>emb|CR618700.1| full-length cDNA clone CS0DN001YO13 of Adult brain of Homo sapiens
           (human)
          Length = 1523

 Score = 38.2 bits (19), Expect = 2.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 43  acacaaggcttggattcaa 61
           |||||||||||||||||||
Sbjct: 430 acacaaggcttggattcaa 412



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>dbj|AP007171.1| Aspergillus oryzae RIB40 genomic DNA, SC011
          Length = 2505489

 Score = 38.2 bits (19), Expect = 2.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 50      gcttggattcaaggctagc 68
               |||||||||||||||||||
Sbjct: 1725421 gcttggattcaaggctagc 1725439



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>gb|AC155923.2| Mus musculus BAC clone RP24-488E11 from chromosome 9, complete sequence
          Length = 134932

 Score = 38.2 bits (19), Expect = 2.9
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 47     aaggcttggattcaaggctagct 69
              ||||| |||||||||||||||||
Sbjct: 132235 aaggcatggattcaaggctagct 132257



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>dbj|AP001189.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-672A2, complete
              sequence
          Length = 186389

 Score = 38.2 bits (19), Expect = 2.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 43     acacaaggcttggattcaa 61
              |||||||||||||||||||
Sbjct: 103030 acacaaggcttggattcaa 103048



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>gb|AC169127.3| Mus musculus BAC clone RP24-493G21 from chromosome 9, complete sequence
          Length = 156163

 Score = 38.2 bits (19), Expect = 2.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 47    aaggcttggattcaaggctagct 69
             ||||| |||||||||||||||||
Sbjct: 75717 aaggcatggattcaaggctagct 75695


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 728,508
Number of Sequences: 3902068
Number of extensions: 728508
Number of successful extensions: 49959
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 49941
Number of HSP's gapped (non-prelim): 18
length of query: 72
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 51
effective length of database: 17,151,101,840
effective search space: 874706193840
effective search space used: 874706193840
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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