ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart07c09 |
|---|---|
| Clone Library Name | barley_pub |
>HYIG_MOUSE (P04219) Hypothetical Ig-region protein| Length = 140 Score = 32.0 bits (71), Expect = 0.73 Identities = 18/44 (40%), Positives = 19/44 (43%), Gaps = 1/44 (2%) Frame = +1 Query: 244 LCPPPRSEAIRRQWCCPAFCFWFLEQQPAAILVSPSI-PGTGRP 372 LCP P WCC W L Q AI V S+ PGT P Sbjct: 64 LCPQPTILG----WCCFKLVIWVLSQSSEAIAVGQSLSPGTNIP 103
>LCE3C_HUMAN (Q5T5A8) Late cornified envelope protein 3C (Late envelope protein| 15) (Small proline-rich-like epidermal differentiation complex protein 3A) Length = 94 Score = 31.6 bits (70), Expect = 0.95 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 3/38 (7%) Frame = -3 Query: 329 AGCCSKNQKQKAGQHHCRRIAS---DRGGGHKNGGDCK 225 +GCC + + H CRR S DRG G + GG C+ Sbjct: 50 SGCCLSHHRHFRS-HQCRRQRSNSCDRGSGQQGGGSCR 86
>LCE2D_HUMAN (Q5TA82) Late cornified envelope protein 2D (Late envelope protein| 12) (Small proline-rich-like epidermal differentiation complex protein 1A) Length = 110 Score = 30.0 bits (66), Expect = 2.8 Identities = 21/71 (29%), Positives = 27/71 (38%) Frame = +1 Query: 235 PPFLCPPPRSEAIRRQWCCPAFCFWFLEQQPAAILVSPSIPGTGRPAACSACRP*SGTAR 414 PP CPP + + CP C P P PA S C P SG+ Sbjct: 12 PPPKCPPKCTPKCPPK--CPPKC-------------PPQCPAPCSPAVSSCCGPSSGSCC 56 Query: 415 TPAAPCSCTSG 447 P++ C+SG Sbjct: 57 GPSSGGCCSSG 67
>LIPA_VIBPA (Q87RR1) Lipoyl synthase (EC 2.8.1.-) (Lipoic acid synthase)| (Lipoate synthase) (Lipoyl-acyl-carrier protein synthase) (Sulfur insertion protein lipA) (Lip-syn) Length = 321 Score = 30.0 bits (66), Expect = 2.8 Identities = 18/54 (33%), Positives = 28/54 (51%) Frame = -2 Query: 303 AEGRTTPLPPDRL*SGRRTQEWRRLQTVVSDSLIKFVKFTTVDYYSFCEGGDSH 142 A GR PLPP+ +E ++L ++D +K+V T+VD +GG H Sbjct: 104 AHGR--PLPPE-------AEEPQKLARTIADMKLKYVVITSVDRDDLRDGGAQH 148
>MCSP_RAT (Q64298) Sperm mitochondrial-associated cysteine-rich protein| Length = 145 Score = 30.0 bits (66), Expect = 2.8 Identities = 20/74 (27%), Positives = 28/74 (37%), Gaps = 2/74 (2%) Frame = +1 Query: 235 PPFLCPPPRSEAIRRQWCCP--AFCFWFLEQQPAAILVSPSIPGTGRPAACSACRP*SGT 408 PP C PP+ +++ CCP C P + +P + P C A P + Sbjct: 17 PPKPCCPPKPCCLQKSPCCPKSPCC------PPKSPCCTPKVCPCPTPCPCPATCPAACA 70 Query: 409 ARTPAAPCSCTSGT 450 P PC T T Sbjct: 71 CPCPMKPCCPTKCT 84
>CYB6_CHLTE (Q9F721) Cytochrome bc complex cytochrome b subunit| Length = 427 Score = 30.0 bits (66), Expect = 2.8 Identities = 12/30 (40%), Positives = 18/30 (60%) Frame = +1 Query: 346 PSIPGTGRPAACSACRP*SGTARTPAAPCS 435 P++PG +PAA A +P + PAAP + Sbjct: 18 PAVPGAAKPAAPGAAKPAAKAPAKPAAPAA 47
>GGA2_HUMAN (Q9UJY4) ADP-ribosylation factor-binding protein GGA2| (Golgi-localized, gamma ear-containing, ARF-binding protein 2) (Gamma-adaptin-related protein 2) (VHS domain and ear domain of gamma-adaptin) (Vear) Length = 613 Score = 30.0 bits (66), Expect = 2.8 Identities = 15/49 (30%), Positives = 22/49 (44%) Frame = -1 Query: 430 MVPPVYAPCPIKAGTQNTRPADQCPEWRG*PRWLLAAAPRTRSRRQDNT 284 ++ P APCP+ +Q + P + P + P W A P S NT Sbjct: 421 LLSPQPAPCPLNYVSQKSVPKEVPPGTKSSPGWSWEAGPLAPSPSSQNT 469
>LCE2C_HUMAN (Q5TA81) Late cornified envelope protein 2C (Late envelope protein| 11) Length = 110 Score = 29.3 bits (64), Expect = 4.7 Identities = 21/71 (29%), Positives = 27/71 (38%) Frame = +1 Query: 235 PPFLCPPPRSEAIRRQWCCPAFCFWFLEQQPAAILVSPSIPGTGRPAACSACRP*SGTAR 414 PP CPP + + CP C P P PA S C P SG+ Sbjct: 12 PPPKCPPKCTPKCPPK--CPPKC-------------PPQCPAPCFPAVSSCCGPSSGSCC 56 Query: 415 TPAAPCSCTSG 447 P++ C+SG Sbjct: 57 GPSSGGCCSSG 67
>LCE2B_HUMAN (O14633) Late cornified envelope protein 2B (Late envelope protein| 10) (Small proline-rich-like epidermal differentiation complex protein 1B) (Skin-specific protein Xp5) Length = 110 Score = 29.3 bits (64), Expect = 4.7 Identities = 23/71 (32%), Positives = 26/71 (36%) Frame = +1 Query: 235 PPFLCPPPRSEAIRRQWCCPAFCFWFLEQQPAAILVSPSIPGTGRPAACSACRP*SGTAR 414 PP CPP + CP C P L P P PA S C P SG Sbjct: 12 PPPKCPPKCTPK------CPPKC-------PPKCL--PQCPAPCSPAVSSCCGPISGGCC 56 Query: 415 TPAAPCSCTSG 447 P++ C SG Sbjct: 57 GPSSGGCCNSG 67
>LIPA_VIBVY (Q7MN17) Lipoyl synthase (EC 2.8.1.-) (Lipoic acid synthase)| (Lipoate synthase) (Lipoyl-acyl-carrier protein synthase) (Sulfur insertion protein lipA) (Lip-syn) Length = 321 Score = 29.3 bits (64), Expect = 4.7 Identities = 18/54 (33%), Positives = 27/54 (50%) Frame = -2 Query: 303 AEGRTTPLPPDRL*SGRRTQEWRRLQTVVSDSLIKFVKFTTVDYYSFCEGGDSH 142 A GR PLPP+ +E +L ++D +K+V T+VD +GG H Sbjct: 104 AHGR--PLPPE-------AEEPTKLAKTIADMKLKYVVITSVDRDDLRDGGAKH 148
>LIPA_VIBVU (Q8DFD1) Lipoyl synthase (EC 2.8.1.-) (Lipoic acid synthase)| (Lipoate synthase) (Lipoyl-acyl-carrier protein synthase) (Sulfur insertion protein lipA) (Lip-syn) Length = 321 Score = 29.3 bits (64), Expect = 4.7 Identities = 18/54 (33%), Positives = 27/54 (50%) Frame = -2 Query: 303 AEGRTTPLPPDRL*SGRRTQEWRRLQTVVSDSLIKFVKFTTVDYYSFCEGGDSH 142 A GR PLPP+ +E +L ++D +K+V T+VD +GG H Sbjct: 104 AHGR--PLPPE-------AEEPTKLAKTIADMKLKYVVITSVDRDDLRDGGAKH 148
>TOP1_RICCN (Q92IH1) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)| (Omega-protein) (Relaxing enzyme) (Untwisting enzyme) (Swivelase) Length = 776 Score = 29.3 bits (64), Expect = 4.7 Identities = 16/61 (26%), Positives = 29/61 (47%) Frame = +1 Query: 97 HLYKPRLLKHQLLVSVTIPSLTKRIIIHSSKLDKFNQRIRDHRLQSPPFLCPPPRSEAIR 276 H+ +L K ++ LTK++ H +DK ++ + R PPF+ + EA R Sbjct: 214 HVNDQKLEKFSIINEKNAKDLTKKLKSHKFHVDKIEKK-QQKRQPQPPFITSSLQQEAAR 272 Query: 277 R 279 + Sbjct: 273 K 273
>AIM1_HUMAN (Q9Y4K1) Absent in melanoma 1 protein| Length = 1723 Score = 28.9 bits (63), Expect = 6.2 Identities = 10/23 (43%), Positives = 14/23 (60%) Frame = -2 Query: 333 GCWLLLQEPEAEGRTTPLPPDRL 265 GCW+L ++P EG + PL L Sbjct: 1062 GCWILYEQPNFEGHSIPLEEGEL 1084
>RK2_PINTH (O62940) Chloroplast 50S ribosomal protein L2| Length = 276 Score = 28.9 bits (63), Expect = 6.2 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 8/50 (16%) Frame = -3 Query: 368 RPVPGMEGLTKMAAGCCSKNQKQKAGQHHCRR--------IASDRGGGHK 243 R V G +G ++ +K +GQHHC + A RGGGHK Sbjct: 16 RSVSGFDGRVQL-----DPQKKLTSGQHHCGKGRNGRGIITARHRGGGHK 60
>RK2_PINKO (Q85WS5) Chloroplast 50S ribosomal protein L2| Length = 276 Score = 28.9 bits (63), Expect = 6.2 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 8/50 (16%) Frame = -3 Query: 368 RPVPGMEGLTKMAAGCCSKNQKQKAGQHHCRR--------IASDRGGGHK 243 R V G +G ++ +K +GQHHC + A RGGGHK Sbjct: 16 RSVSGFDGRVQL-----DPQKKLTSGQHHCGKGRNARGIITARHRGGGHK 60
>VWF_CANFA (Q28295) Von Willebrand factor precursor (vWF)| Length = 2813 Score = 28.5 bits (62), Expect = 8.1 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = +1 Query: 223 RLQSPPFLCPPPRSEAIRRQWCCPAF 300 R +SPP CPP R+ A+R+ CC + Sbjct: 2368 RRESPPS-CPPHRTLALRKTQCCDEY 2392
>CRGE_BOVIN (Q28088) Gamma crystallin E (Gamma crystallin IIIA)| (Gamma-C-crystallin) Length = 173 Score = 28.5 bits (62), Expect = 8.1 Identities = 13/33 (39%), Positives = 17/33 (51%) Frame = -2 Query: 336 DGCWLLLQEPEAEGRTTPLPPDRL*SGRRTQEW 238 +GCW+L + P GR L P RR Q+W Sbjct: 127 EGCWVLYEMPNYRGRQYLLRPQEY---RRYQDW 156
>CRGC_MOUSE (Q61597) Gamma crystallin C| Length = 173 Score = 28.5 bits (62), Expect = 8.1 Identities = 13/33 (39%), Positives = 17/33 (51%) Frame = -2 Query: 336 DGCWLLLQEPEAEGRTTPLPPDRL*SGRRTQEW 238 +GCW+L + P GR L P RR Q+W Sbjct: 127 EGCWVLYEMPNYRGRQYLLRPQEY---RRFQDW 156
>CRGC_HUMAN (P07315) Gamma crystallin C (Gamma crystallin 2-1) (Gamma| crystallin 3) Length = 173 Score = 28.5 bits (62), Expect = 8.1 Identities = 13/33 (39%), Positives = 17/33 (51%) Frame = -2 Query: 336 DGCWLLLQEPEAEGRTTPLPPDRL*SGRRTQEW 238 +GCW+L + P GR L P RR Q+W Sbjct: 127 EGCWVLYELPNYRGRQYLLRPQEY---RRCQDW 156
>BIK1_YEAST (P11709) Nuclear fusion protein BIK1| Length = 440 Score = 28.5 bits (62), Expect = 8.1 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 2/60 (3%) Frame = +1 Query: 115 LLKHQLLVSVTIPSLTKRIIIHSSKLDKFNQRIRDHRLQSPPFLCPPP--RSEAIRRQWC 288 L K Q S + SLTK++ + K+ + Q ++S P PP + A R+QWC Sbjct: 357 LTKPQDSSSEEVASLTKKLEEANEKIKQLEQAQAQTAVESLPIFDPPAPVDTTAGRQQWC 416 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,285,384 Number of Sequences: 219361 Number of extensions: 1197949 Number of successful extensions: 3534 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 3405 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3531 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2735358828 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
