ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart07c07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AL662952.6|OSJN00151 Oryza sativa genomic DNA, chromosome 4,... 66 1e-07
2dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 66 1e-07
3dbj|AK071102.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 1e-07
4gb|AY110364.1| Zea mays CL5344_1 mRNA sequence 66 1e-07
5gb|AC127269.3| Mus musculus BAC clone RP23-432B20 from chromosom... 46 0.10
6gb|AC156503.1| Mus musculus BAC clone RP23-272M11 from 9, comple... 46 0.10
7gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, compl... 42 1.6
8emb|AL138956.17| Human DNA sequence from clone RP11-16D22 on chr... 42 1.6
9gb|AC121297.20| Mus musculus chromosome 1, clone RP23-326H11, co... 40 6.2
10gb|CP000089.1| Dechloromonas aromatica RCB, complete genome 40 6.2
11emb|BX294138.1| Pirellula sp. strain 1 complete genome; segment ... 40 6.2
12gb|AC114912.3| Homo sapiens BAC clone RP11-552M14 from 4, comple... 40 6.2
13gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete g... 40 6.2
14gb|AC096661.1| Homo sapiens BAC clone RP11-61G24 from 4, complet... 40 6.2
15emb|AL807387.10| Mouse DNA sequence from clone RP23-24J10 on chr... 40 6.2
16gb|AC154884.15| Mus musculus chromosome 3, clone RP23-145H17, co... 40 6.2
17gb|AC115043.10| Mus musculus chromosome 3, clone RP24-294N3, com... 40 6.2 
>emb|AL662952.6|OSJN00151 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0009P12,
             complete sequence
          Length = 179644

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 36/37 (97%)
 Strand = Plus / Plus

                                                  
Query: 5     cactgaatatggattgaatgaatctggtcaatatata 41
             |||||||||||||||||||||||||| ||||||||||
Sbjct: 85207 cactgaatatggattgaatgaatctgatcaatatata 85243
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 36/37 (97%)
 Strand = Plus / Plus

                                                     
Query: 5        cactgaatatggattgaatgaatctggtcaatatata 41
                |||||||||||||||||||||||||| ||||||||||
Sbjct: 29948455 cactgaatatggattgaatgaatctgatcaatatata 29948491
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>dbj|AK071102.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023077L10, full
            insert sequence
          Length = 1310

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 36/37 (97%)
 Strand = Plus / Minus

                                                 
Query: 5    cactgaatatggattgaatgaatctggtcaatatata 41
            |||||||||||||||||||||||||| ||||||||||
Sbjct: 1302 cactgaatatggattgaatgaatctgatcaatatata 1266
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>gb|AY110364.1| Zea mays CL5344_1 mRNA sequence
          Length = 1292

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 36/37 (97%)
 Strand = Plus / Minus

                                                 
Query: 5    cactgaatatggattgaatgaatctggtcaatatata 41
            |||||||||||||||||||||||||||| ||||||||
Sbjct: 1289 cactgaatatggattgaatgaatctggttaatatata 1253
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>gb|AC127269.3| Mus musculus BAC clone RP23-432B20 from chromosome 9, complete sequence
          Length = 212660

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 147    gatgggcattgtgcttcccagat 169
              |||||||||||||||||||||||
Sbjct: 160404 gatgggcattgtgcttcccagat 160426
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>gb|AC156503.1| Mus musculus BAC clone RP23-272M11 from 9, complete sequence
          Length = 162078

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 147   gatgggcattgtgcttcccagat 169
             |||||||||||||||||||||||
Sbjct: 53631 gatgggcattgtgcttcccagat 53653
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>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence
          Length = 3363523

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 345    cccaaatccaatgaagccgccgcat 369
              ||||||||| |||||||||||||||
Sbjct: 847795 cccaaatccgatgaagccgccgcat 847819
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>emb|AL138956.17| Human DNA sequence from clone RP11-16D22 on chromosome 13 Contains the
             5' end of a novel gene, complete sequence
          Length = 165257

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 310   aaaccatgtgtcatccgcctc 330
             |||||||||||||||||||||
Sbjct: 41431 aaaccatgtgtcatccgcctc 41451
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>gb|AC121297.20| Mus musculus chromosome 1, clone RP23-326H11, complete sequence
          Length = 207496

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 436    atttctggtgccttttcttg 455
              ||||||||||||||||||||
Sbjct: 100603 atttctggtgccttttcttg 100622
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>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome
          Length = 4501104

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 399    gtggctcctcttcggtgttcatga 422
              |||||| |||||||||||||||||
Sbjct: 750582 gtggctgctcttcggtgttcatga 750605
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>emb|BX294138.1| Pirellula sp. strain 1 complete genome; segment 6/24
          Length = 321950

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 125   catcccaagcaacttgcctg 144
             ||||||||||||||||||||
Sbjct: 21214 catcccaagcaacttgcctg 21195
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>gb|AC114912.3| Homo sapiens BAC clone RP11-552M14 from 4, complete sequence
          Length = 95468

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 30    ggtcaatatatataccagga 49
             ||||||||||||||||||||
Sbjct: 23504 ggtcaatatatataccagga 23485
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>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome
          Length = 6260361

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 237     tccggcaggcgggtgatggg 256
               ||||||||||||||||||||
Sbjct: 1906763 tccggcaggcgggtgatggg 1906744
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>gb|AC096661.1| Homo sapiens BAC clone RP11-61G24 from 4, complete sequence
          Length = 123661

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 31   gtcaatatatataccaggattttg 54
            |||||||| |||||||||||||||
Sbjct: 9994 gtcaatatctataccaggattttg 9971
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>emb|AL807387.10| Mouse DNA sequence from clone RP23-24J10 on chromosome 4, complete
              sequence
          Length = 241148

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 148    atgggcattgtgcttcccag 167
              ||||||||||||||||||||
Sbjct: 140568 atgggcattgtgcttcccag 140587
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>gb|AC154884.15| Mus musculus chromosome 3, clone RP23-145H17, complete sequence
          Length = 231400

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 186    atgtggggggtgaccatgaaatgaaacagtgt 217
              ||||| |||| |||| ||||||||||||||||
Sbjct: 223436 atgtgtggggagaccttgaaatgaaacagtgt 223467
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>gb|AC115043.10| Mus musculus chromosome 3, clone RP24-294N3, complete sequence
          Length = 150336

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 186   atgtggggggtgaccatgaaatgaaacagtgt 217
             ||||| |||| |||| ||||||||||||||||
Sbjct: 45227 atgtgtggggagaccttgaaatgaaacagtgt 45196


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,382,302
Number of Sequences: 3902068
Number of extensions: 3382302
Number of successful extensions: 54302
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54209
Number of HSP's gapped (non-prelim): 93
length of query: 461
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 439
effective length of database: 17,147,199,772
effective search space: 7527620699908
effective search space used: 7527620699908
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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