ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart07c06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AJ422119.1|TAE422119 Triticum aestivum mRNA for xylanase inh... 48 0.007
2gb|AY446904.1| Calanus finmarchicus 18S ribosomal RNA gene, part... 38 6.9
3gb|AC163107.3| Mus musculus BAC clone RP23-156A21 from chromosom... 38 6.9
4emb|BX088693.15| Zebrafish DNA sequence from clone CH211-212E22 ... 38 6.9
5gb|AF514344.1| Neocalanus cristatus clone A line 18S ribosomal R... 38 6.9
6gb|AF514343.1| Neocalanus cristatus clone Nihon 18S ribosomal RN... 38 6.9
7gb|AF514342.1| Neocalanus cristatus clone Papa 18S ribosomal RNA... 38 6.9
8gb|AF514341.1| Neocalanus cristatus clone Bering 18S ribosomal R... 38 6.9
9emb|CR378675.1| Photobacterium profundum SS9 chromosome 2; segme... 38 6.9
10gb|AC122210.5| Mus musculus BAC clone RP23-96G7 from chromosome ... 38 6.9
11emb|AL645690.7| Mouse DNA sequence from clone RP23-16P8 on chrom... 38 6.9
12gb|AY118071.1| Calanoides acutus 18S ribosomal RNA gene, partial... 38 6.9
13gb|AY118066.1| Calanus propinquus 18S ribosomal RNA gene, partia... 38 6.9
14gb|AF462322.1|AF462322 Undinula vulgaris 18S ribosomal RNA gene,... 38 6.9
15gb|AF462319.1|AF462319 Cosmocalanus darwinii 18S ribosomal RNA g... 38 6.9
16dbj|AK145709.1| Mus musculus blastocyst blastocyst cDNA, RIKEN f... 38 6.9
17dbj|AK169823.1| Mus musculus 2 days neonate thymus thymic cells ... 38 6.9
18emb|BX255915.13| Zebrafish DNA sequence from clone CH211-245L1 i... 38 6.9
19dbj|AK169440.1| Mus musculus 3 days neonate thymus cDNA, RIKEN f... 38 6.9
20gb|L81939.1| Calanus pacificus 18S ribosomal RNA gene, complete ... 38 6.9
21gb|AC163352.2| Mus musculus BAC clone RP23-98P11 from chromosome... 38 6.9
22dbj|AK033205.1| Mus musculus 15 days embryo male testis cDNA, RI... 38 6.9
23gb|AF367719.1|AF367719 Calanus finmarchicus 18S small subunit ri... 38 6.9
24gb|AF367716.1|AF367716 Mesocalanus tenuicornis 18S ribosomal RNA... 38 6.9
25gb|AF367715.1|AF367715 Nannocalanus minor 18S ribosomal RNA gene... 38 6.9
26gb|AF367714.1|AF367714 Calanus finmarchicus 18S ribosomal RNA ge... 38 6.9
27gb|AF367713.1|AF367713 Neocalanus tonsus 18S ribosomal RNA gene,... 38 6.9
28gb|AF367712.1|AF367712 Calanoides acutus 18S ribosomal RNA gene,... 38 6.9
29gb|BC094252.1| Mus musculus BRCA1 interacting protein C-terminal... 38 6.9
30gb|AF047722.1|AF047722 Trypanosoma brucei rhodesiense adenylate ... 38 6.9
31ref|NM_178309.1| Mus musculus BRCA1 interacting protein C-termin... 38 6.9
32gb|AC141482.4| Mus musculus BAC clone RP23-159C3 from 16, comple... 38 6.9
33emb|AL670230.12| Mouse DNA sequence from clone RP23-15D12 on chr... 38 6.9
34emb|X04678.1|TBSNU2G Trypanosoma brucei gambiense U2 RNA gene 38 6.9 
>emb|AJ422119.1|TAE422119 Triticum aestivum mRNA for xylanase inhibitor protein I (xipI gene)
          Length = 915

 Score = 48.1 bits (24), Expect = 0.007
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                           
Query: 107 acttgatcaagctgctggaattggtctgcttg 138
           ||||||||||||||||| | ||||||||||||
Sbjct: 904 acttgatcaagctgctgtagttggtctgcttg 873
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>gb|AY446904.1| Calanus finmarchicus 18S ribosomal RNA gene, partial sequence
          Length = 374

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 6  tccaagtacaagcctcact 24
          |||||||||||||||||||
Sbjct: 35 tccaagtacaagcctcact 53
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>gb|AC163107.3| Mus musculus BAC clone RP23-156A21 from chromosome 16, complete sequence
          Length = 221691

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 85     gcaagtatagctcaggggtaaaa 107
              ||||||||||||||| |||||||
Sbjct: 215164 gcaagtatagctcagtggtaaaa 215142
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>emb|BX088693.15| Zebrafish DNA sequence from clone CH211-212E22 in linkage group 2,
             complete sequence
          Length = 150021

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 40    gcaatacatcaaaatcaaa 58
             |||||||||||||||||||
Sbjct: 15064 gcaatacatcaaaatcaaa 15082
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>gb|AF514344.1| Neocalanus cristatus clone A line 18S ribosomal RNA gene, partial
          sequence
          Length = 1802

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 6  tccaagtacaagcctcact 24
          |||||||||||||||||||
Sbjct: 57 tccaagtacaagcctcact 75
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>gb|AF514343.1| Neocalanus cristatus clone Nihon 18S ribosomal RNA gene, partial
          sequence
          Length = 1802

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 6  tccaagtacaagcctcact 24
          |||||||||||||||||||
Sbjct: 57 tccaagtacaagcctcact 75
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>gb|AF514342.1| Neocalanus cristatus clone Papa 18S ribosomal RNA gene, partial
          sequence
          Length = 1802

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 6  tccaagtacaagcctcact 24
          |||||||||||||||||||
Sbjct: 57 tccaagtacaagcctcact 75
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>gb|AF514341.1| Neocalanus cristatus clone Bering 18S ribosomal RNA gene, partial
          sequence
          Length = 1802

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 6  tccaagtacaagcctcact 24
          |||||||||||||||||||
Sbjct: 57 tccaagtacaagcctcact 75
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>emb|CR378675.1| Photobacterium profundum SS9 chromosome 2; segment 1/7
          Length = 349544

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 18    cctcactttattctcgctt 36
             |||||||||||||||||||
Sbjct: 53027 cctcactttattctcgctt 53009
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>gb|AC122210.5| Mus musculus BAC clone RP23-96G7 from chromosome 10, complete sequence
          Length = 231988

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 123   ggaattggtctgcttggca 141
             |||||||||||||||||||
Sbjct: 74549 ggaattggtctgcttggca 74531
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>emb|AL645690.7| Mouse DNA sequence from clone RP23-16P8 on chromosome 11 Contains
            part of the Brip1 gene for BRCA1 interacting protein
            C-terminal helicase 1, complete sequence
          Length = 10179

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 34   cttgcagcaatacatcaaaatca 56
            ||||||||||| |||||||||||
Sbjct: 4147 cttgcagcaattcatcaaaatca 4169
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>gb|AY118071.1| Calanoides acutus 18S ribosomal RNA gene, partial sequence
          Length = 664

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 6  tccaagtacaagcctcact 24
          |||||||||||||||||||
Sbjct: 18 tccaagtacaagcctcact 36
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>gb|AY118066.1| Calanus propinquus 18S ribosomal RNA gene, partial sequence
          Length = 664

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 6  tccaagtacaagcctcact 24
          |||||||||||||||||||
Sbjct: 18 tccaagtacaagcctcact 36
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>gb|AF462322.1|AF462322 Undinula vulgaris 18S ribosomal RNA gene, partial sequence
          Length = 650

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 6  tccaagtacaagcctcact 24
          |||||||||||||||||||
Sbjct: 24 tccaagtacaagcctcact 42
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>gb|AF462319.1|AF462319 Cosmocalanus darwinii 18S ribosomal RNA gene, partial sequence
          Length = 657

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 6  tccaagtacaagcctcact 24
          |||||||||||||||||||
Sbjct: 33 tccaagtacaagcctcact 51
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>dbj|AK145709.1| Mus musculus blastocyst blastocyst cDNA, RIKEN full-length enriched
            library, clone:I1C0031P21 product:BRCA1 interacting
            protein C-terminal helicase 1, full insert sequence
          Length = 2810

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 34   cttgcagcaatacatcaaaatca 56
            ||||||||||| |||||||||||
Sbjct: 2346 cttgcagcaattcatcaaaatca 2324
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>dbj|AK169823.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN
            full-length enriched library, clone:E430028E24
            product:BRCA1 interacting protein C-terminal helicase 1,
            full insert sequence
          Length = 2546

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 34   cttgcagcaatacatcaaaatca 56
            ||||||||||| |||||||||||
Sbjct: 2082 cttgcagcaattcatcaaaatca 2060
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>emb|BX255915.13| Zebrafish DNA sequence from clone CH211-245L1 in linkage group 5,
             complete sequence
          Length = 157382

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 12    tacaagcctcactttattc 30
             |||||||||||||||||||
Sbjct: 77503 tacaagcctcactttattc 77485
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>dbj|AK169440.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched
            library, clone:A630004C11 product:BRCA1 interacting
            protein C-terminal helicase 1, full insert sequence
          Length = 2756

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 34   cttgcagcaatacatcaaaatca 56
            ||||||||||| |||||||||||
Sbjct: 2292 cttgcagcaattcatcaaaatca 2270
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>gb|L81939.1| Calanus pacificus 18S ribosomal RNA gene, complete sequence
          Length = 1800

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 6  tccaagtacaagcctcact 24
          |||||||||||||||||||
Sbjct: 54 tccaagtacaagcctcact 72
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>gb|AC163352.2| Mus musculus BAC clone RP23-98P11 from chromosome 16, complete sequence
          Length = 190996

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 85     gcaagtatagctcaggggtaaaa 107
              ||||||||||||||| |||||||
Sbjct: 154989 gcaagtatagctcagtggtaaaa 155011
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>dbj|AK033205.1| Mus musculus 15 days embryo male testis cDNA, RIKEN full-length
            enriched library, clone:8030460J03 product:similar to
            BRCA1-BINDING HELICASE-LIKE PROTEIN BACH1 [Homo sapiens],
            full insert sequence
          Length = 3836

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 34   cttgcagcaatacatcaaaatca 56
            ||||||||||| |||||||||||
Sbjct: 2316 cttgcagcaattcatcaaaatca 2294
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>gb|AF367719.1|AF367719 Calanus finmarchicus 18S small subunit ribosomal RNA gene,
          partial sequence
          Length = 1749

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 6  tccaagtacaagcctcact 24
          |||||||||||||||||||
Sbjct: 40 tccaagtacaagcctcact 58
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>gb|AF367716.1|AF367716 Mesocalanus tenuicornis 18S ribosomal RNA gene, partial sequence
          Length = 657

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 6  tccaagtacaagcctcact 24
          |||||||||||||||||||
Sbjct: 33 tccaagtacaagcctcact 51
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>gb|AF367715.1|AF367715 Nannocalanus minor 18S ribosomal RNA gene, partial sequence
          Length = 657

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 6  tccaagtacaagcctcact 24
          |||||||||||||||||||
Sbjct: 33 tccaagtacaagcctcact 51
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>gb|AF367714.1|AF367714 Calanus finmarchicus 18S ribosomal RNA gene, partial sequence
          Length = 658

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 6  tccaagtacaagcctcact 24
          |||||||||||||||||||
Sbjct: 33 tccaagtacaagcctcact 51
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>gb|AF367713.1|AF367713 Neocalanus tonsus 18S ribosomal RNA gene, partial sequence
          Length = 657

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 6  tccaagtacaagcctcact 24
          |||||||||||||||||||
Sbjct: 33 tccaagtacaagcctcact 51
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>gb|AF367712.1|AF367712 Calanoides acutus 18S ribosomal RNA gene, partial sequence
          Length = 657

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 6  tccaagtacaagcctcact 24
          |||||||||||||||||||
Sbjct: 33 tccaagtacaagcctcact 51
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>gb|BC094252.1| Mus musculus BRCA1 interacting protein C-terminal helicase 1, mRNA
            (cDNA clone MGC:106602 IMAGE:6401109), complete cds
          Length = 3917

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 34   cttgcagcaatacatcaaaatca 56
            ||||||||||| |||||||||||
Sbjct: 2294 cttgcagcaattcatcaaaatca 2272
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>gb|AF047722.1|AF047722 Trypanosoma brucei rhodesiense adenylate kinase gene, complete cds,
            and U2 snRNA gene, complete sequence
          Length = 3360

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 20   tcactttattctcgcttgc 38
            |||||||||||||||||||
Sbjct: 3318 tcactttattctcgcttgc 3336
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>ref|NM_178309.1| Mus musculus BRCA1 interacting protein C-terminal helicase 1 (Brip1),
            mRNA
          Length = 6934

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 34   cttgcagcaatacatcaaaatca 56
            ||||||||||| |||||||||||
Sbjct: 2346 cttgcagcaattcatcaaaatca 2324
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>gb|AC141482.4| Mus musculus BAC clone RP23-159C3 from 16, complete sequence
          Length = 180832

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 85    gcaagtatagctcaggggtaaaa 107
             ||||||||||||||| |||||||
Sbjct: 68443 gcaagtatagctcagtggtaaaa 68465
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>emb|AL670230.12| Mouse DNA sequence from clone RP23-15D12 on chromosome X, complete
             sequence
          Length = 207966

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 113   tcaagctgctggaattggt 131
             |||||||||||||||||||
Sbjct: 82964 tcaagctgctggaattggt 82982
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>emb|X04678.1|TBSNU2G Trypanosoma brucei gambiense U2 RNA gene
          Length = 372

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 20  tcactttattctcgcttgc 38
           |||||||||||||||||||
Sbjct: 330 tcactttattctcgcttgc 348


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,200,386
Number of Sequences: 3902068
Number of extensions: 1200386
Number of successful extensions: 83115
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 83072
Number of HSP's gapped (non-prelim): 43
length of query: 145
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 124
effective length of database: 17,151,101,840
effective search space: 2126736628160
effective search space used: 2126736628160
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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