ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart07c05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1B3AT_CHICK (P15575) Band 3 anion transport protein (Solute carri... 34 0.12
2DHX33_HUMAN (Q9H6R0) Putative ATP-dependent RNA helicase DHX33 (... 30 2.9
3DHX33_MOUSE (Q80VY9) Putative ATP-dependent RNA helicase DHX33 (... 28 6.6
4CAPP_THES7 (P51060) Phosphoenolpyruvate carboxylase (EC 4.1.1.31... 28 8.6

>B3AT_CHICK (P15575) Band 3 anion transport protein (Solute carrier family 4|
           member 1)
          Length = 922

 Score = 34.3 bits (77), Expect = 0.12
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
 Frame = +3

Query: 120 GARGYHNVSLTVPPMDXP*--HLQAVLPIQRTIXTRRXGEP-TGRXSGG 257
           G +G+   S+ +PP + P   HL A++P+QR    RR   P T R  GG
Sbjct: 317 GLQGFLEASIVLPPQEVPSEQHLHALIPLQRHAVRRRYQHPDTVRSPGG 365



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>DHX33_HUMAN (Q9H6R0) Putative ATP-dependent RNA helicase DHX33 (EC 3.6.1.-)|
           (DEAH box protein 33)
          Length = 707

 Score = 29.6 bits (65), Expect = 2.9
 Identities = 15/25 (60%), Positives = 16/25 (64%)
 Frame = -3

Query: 301 SGGRWLAGGKARRQCPPLXRPVGSP 227
           SGGR   GG  RRQ PPL +P  SP
Sbjct: 40  SGGR--GGGGGRRQQPPLAQPSASP 62



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>DHX33_MOUSE (Q80VY9) Putative ATP-dependent RNA helicase DHX33 (EC 3.6.1.-)|
           (DEAH box protein 33)
          Length = 698

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 15/27 (55%), Positives = 17/27 (62%)
 Frame = -3

Query: 301 SGGRWLAGGKARRQCPPLXRPVGSPXR 221
           +GG   AGG  RRQ PPL +P  SP R
Sbjct: 30  AGGGGGAGG-GRRQTPPLAQPSASPYR 55



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>CAPP_THES7 (P51060) Phosphoenolpyruvate carboxylase (EC 4.1.1.31) (PEPCase)|
           (PEPC)
          Length = 857

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +3

Query: 117 WGARGYHNVSLTVPPMDXP*HLQAVLPIQRTIXTRRXGEP 236
           WG +G H VS+T  P D    L AV  + R +   R G+P
Sbjct: 443 WGDKGAHVVSMTHHPAD----LLAVFLLAREVGLYRPGKP 478


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,496,594
Number of Sequences: 219361
Number of extensions: 813032
Number of successful extensions: 1821
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1820
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2228238148
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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