Clone Name | rbart07c05 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | B3AT_CHICK (P15575) Band 3 anion transport protein (Solute carri... | 34 | 0.12 | 2 | DHX33_HUMAN (Q9H6R0) Putative ATP-dependent RNA helicase DHX33 (... | 30 | 2.9 | 3 | DHX33_MOUSE (Q80VY9) Putative ATP-dependent RNA helicase DHX33 (... | 28 | 6.6 | 4 | CAPP_THES7 (P51060) Phosphoenolpyruvate carboxylase (EC 4.1.1.31... | 28 | 8.6 |
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>B3AT_CHICK (P15575) Band 3 anion transport protein (Solute carrier family 4| member 1) Length = 922 Score = 34.3 bits (77), Expect = 0.12 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 3/49 (6%) Frame = +3 Query: 120 GARGYHNVSLTVPPMDXP*--HLQAVLPIQRTIXTRRXGEP-TGRXSGG 257 G +G+ S+ +PP + P HL A++P+QR RR P T R GG Sbjct: 317 GLQGFLEASIVLPPQEVPSEQHLHALIPLQRHAVRRRYQHPDTVRSPGG 365
>DHX33_HUMAN (Q9H6R0) Putative ATP-dependent RNA helicase DHX33 (EC 3.6.1.-)| (DEAH box protein 33) Length = 707 Score = 29.6 bits (65), Expect = 2.9 Identities = 15/25 (60%), Positives = 16/25 (64%) Frame = -3 Query: 301 SGGRWLAGGKARRQCPPLXRPVGSP 227 SGGR GG RRQ PPL +P SP Sbjct: 40 SGGR--GGGGGRRQQPPLAQPSASP 62
>DHX33_MOUSE (Q80VY9) Putative ATP-dependent RNA helicase DHX33 (EC 3.6.1.-)| (DEAH box protein 33) Length = 698 Score = 28.5 bits (62), Expect = 6.6 Identities = 15/27 (55%), Positives = 17/27 (62%) Frame = -3 Query: 301 SGGRWLAGGKARRQCPPLXRPVGSPXR 221 +GG AGG RRQ PPL +P SP R Sbjct: 30 AGGGGGAGG-GRRQTPPLAQPSASPYR 55
>CAPP_THES7 (P51060) Phosphoenolpyruvate carboxylase (EC 4.1.1.31) (PEPCase)| (PEPC) Length = 857 Score = 28.1 bits (61), Expect = 8.6 Identities = 16/40 (40%), Positives = 21/40 (52%) Frame = +3 Query: 117 WGARGYHNVSLTVPPMDXP*HLQAVLPIQRTIXTRRXGEP 236 WG +G H VS+T P D L AV + R + R G+P Sbjct: 443 WGDKGAHVVSMTHHPAD----LLAVFLLAREVGLYRPGKP 478 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,496,594 Number of Sequences: 219361 Number of extensions: 813032 Number of successful extensions: 1821 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 1770 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1820 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2228238148 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)