ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart07c02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CS007_MOUSE (Q6ZPZ3) Zinc finger CCCH-type domain-containing pro... 26 4.5
2CHS1_RHIOL (P30594) Chitin synthase 1 (EC 2.4.1.16) (Chitin-UDP ... 28 6.2
3CNC_DROME (P20482) Segmentation protein cap'n'collar 28 8.1

>CS007_MOUSE (Q6ZPZ3) Zinc finger CCCH-type domain-containing protein C19orf7|
           homolog
          Length = 1304

 Score = 26.2 bits (56), Expect(2) = 4.5
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 7/53 (13%)
 Frame = +1

Query: 1   PPPPPPLNTAQMD-------HPFILNRKMYHRIQLPTFF*RKITDLIVK*PTG 138
           PPPPPP    QM         P  L + MY++ ++P+ F     +++V+ PTG
Sbjct: 545 PPPPPPPGPPQMSLPTHEPLSPQQLQQDMYNK-KIPSLF-----EIVVR-PTG 590



 Score = 20.8 bits (42), Expect(2) = 4.5
 Identities = 6/19 (31%), Positives = 10/19 (52%)
 Frame = +3

Query: 183 HPSPYLHRRAALHPERHPE 239
           HP  +      +HP+ HP+
Sbjct: 627 HPDMHPDMHPDMHPDMHPD 645



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>CHS1_RHIOL (P30594) Chitin synthase 1 (EC 2.4.1.16) (Chitin-UDP|
          acetyl-glucosaminyl transferase 1)
          Length = 858

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +3

Query: 3  PPPPPFEHSPNGPSLY 50
          PPPPPF  SPN    Y
Sbjct: 42 PPPPPFPSSPNDTGFY 57



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>CNC_DROME (P20482) Segmentation protein cap'n'collar|
          Length = 1383

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 1   PPPPPPLNTAQMDHP 45
           PPPPPP + A + HP
Sbjct: 747 PPPPPPHHAAMLHHP 761


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,406,044
Number of Sequences: 219361
Number of extensions: 888539
Number of successful extensions: 5815
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5460
length of database: 80,573,946
effective HSP length: 60
effective length of database: 67,412,286
effective search space used: 1617894864
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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