Clone Name | rbart07c02 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | CS007_MOUSE (Q6ZPZ3) Zinc finger CCCH-type domain-containing pro... | 26 | 4.5 | 2 | CHS1_RHIOL (P30594) Chitin synthase 1 (EC 2.4.1.16) (Chitin-UDP ... | 28 | 6.2 | 3 | CNC_DROME (P20482) Segmentation protein cap'n'collar | 28 | 8.1 |
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>CS007_MOUSE (Q6ZPZ3) Zinc finger CCCH-type domain-containing protein C19orf7| homolog Length = 1304 Score = 26.2 bits (56), Expect(2) = 4.5 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 7/53 (13%) Frame = +1 Query: 1 PPPPPPLNTAQMD-------HPFILNRKMYHRIQLPTFF*RKITDLIVK*PTG 138 PPPPPP QM P L + MY++ ++P+ F +++V+ PTG Sbjct: 545 PPPPPPPGPPQMSLPTHEPLSPQQLQQDMYNK-KIPSLF-----EIVVR-PTG 590 Score = 20.8 bits (42), Expect(2) = 4.5 Identities = 6/19 (31%), Positives = 10/19 (52%) Frame = +3 Query: 183 HPSPYLHRRAALHPERHPE 239 HP + +HP+ HP+ Sbjct: 627 HPDMHPDMHPDMHPDMHPD 645
>CHS1_RHIOL (P30594) Chitin synthase 1 (EC 2.4.1.16) (Chitin-UDP| acetyl-glucosaminyl transferase 1) Length = 858 Score = 28.1 bits (61), Expect = 6.2 Identities = 10/16 (62%), Positives = 10/16 (62%) Frame = +3 Query: 3 PPPPPFEHSPNGPSLY 50 PPPPPF SPN Y Sbjct: 42 PPPPPFPSSPNDTGFY 57
>CNC_DROME (P20482) Segmentation protein cap'n'collar| Length = 1383 Score = 27.7 bits (60), Expect = 8.1 Identities = 9/15 (60%), Positives = 11/15 (73%) Frame = +1 Query: 1 PPPPPPLNTAQMDHP 45 PPPPPP + A + HP Sbjct: 747 PPPPPPHHAAMLHHP 761 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45,406,044 Number of Sequences: 219361 Number of extensions: 888539 Number of successful extensions: 5815 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 3211 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5460 length of database: 80,573,946 effective HSP length: 60 effective length of database: 67,412,286 effective search space used: 1617894864 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)