ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart07c02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC123528.2| Oryza sativa chromosome 11 clone OSJNBa0078E03, ... 60 4e-06
2dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 60 4e-06
3dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 60 4e-06
4dbj|AK103307.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 4e-06
5gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 60 4e-06
6gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 60 4e-06
7emb|BX000502.2|CNS08CDS Oryza sativa chromosome 12, . BAC OSJNBb... 60 4e-06
8emb|BX000504.2|CNS08CDU Oryza sativa chromosome 12, . BAC OJ1239... 60 4e-06
9ref|XM_463749.1| Oryza sativa (japonica cultivar-group), predic... 40 3.3
10gb|DQ451873.1| Eleutheria dichotoma fosmid fCnox-5, complete seq... 40 3.3
11gb|AC137822.30| Medicago truncatula clone mth2-31e20, complete s... 40 3.3
12gb|CP000133.1| Rhizobium etli CFN 42, complete genome 40 3.3
13gb|AC148965.3| Medicago truncatula chromosome 7 BAC clone mth2-1... 40 3.3
14dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.3
15gb|AC013726.7| Homo sapiens BAC clone RP11-400N9 from 2, complet... 40 3.3
16dbj|AP003735.4| Oryza sativa (japonica cultivar-group) genomic D... 40 3.3 
>gb|AC123528.2| Oryza sativa chromosome 11 clone  OSJNBa0078E03, complete sequence
          Length = 149493

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                    
Query: 214    cccttcatcctgagcgtcacccagagcacgtgctccgg 251
              ||||||||||| ||||||||| ||||||||||||||||
Sbjct: 133999 cccttcatcctcagcgtcaccgagagcacgtgctccgg 133962
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                     
Query: 214     cccttcatcctgagcgtcacccagagcacgtgctccgg 251
               ||||||||||| ||||||||| ||||||||||||||||
Sbjct: 1716718 cccttcatcctcagcgtcaccgagagcacgtgctccgg 1716681
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                     
Query: 214     cccttcatcctgagcgtcacccagagcacgtgctccgg 251
               ||||||||||| ||||||||| ||||||||||||||||
Sbjct: 1769828 cccttcatcctcagcgtcaccgagagcacgtgctccgg 1769791
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>dbj|AK103307.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033125E14, full
            insert sequence
          Length = 1928

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                  
Query: 214  cccttcatcctgagcgtcacccagagcacgtgctccgg 251
            ||||||||||| ||||||||| ||||||||||||||||
Sbjct: 1599 cccttcatcctcagcgtcaccgagagcacgtgctccgg 1562
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                     
Query: 214     cccttcatcctgagcgtcacccagagcacgtgctccgg 251
               ||||||||||| ||||||||| ||||||||||||||||
Sbjct: 1767549 cccttcatcctcagcgtcaccgagagcacgtgctccgg 1767512
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                     
Query: 214     cccttcatcctgagcgtcacccagagcacgtgctccgg 251
               ||||||||||| ||||||||| ||||||||||||||||
Sbjct: 1716694 cccttcatcctcagcgtcaccgagagcacgtgctccgg 1716657
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>emb|BX000502.2|CNS08CDS Oryza sativa chromosome 12, . BAC OSJNBb0041E01 of library OSJNBb from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 132026

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                    
Query: 214    cccttcatcctgagcgtcacccagagcacgtgctccgg 251
              ||||||||||| ||||||||| ||||||||||||||||
Sbjct: 123766 cccttcatcctcagcgtcaccgagagcacgtgctccgg 123803
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>emb|BX000504.2|CNS08CDU Oryza sativa chromosome 12, . BAC OJ1239_F07 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 104307

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                   
Query: 214   cccttcatcctgagcgtcacccagagcacgtgctccgg 251
             ||||||||||| ||||||||| ||||||||||||||||
Sbjct: 50203 cccttcatcctcagcgtcaccgagagcacgtgctccgg 50240
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>ref|XM_463749.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1650

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 211  ccgcccttcatcctgagcgtcacc 234
            |||||||||||||| |||||||||
Sbjct: 1601 ccgcccttcatcctcagcgtcacc 1578
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>gb|DQ451873.1| Eleutheria dichotoma fosmid fCnox-5, complete sequence
          Length = 27507

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 45   ctttattctgaatagaaaaa 64
            ||||||||||||||||||||
Sbjct: 2321 ctttattctgaatagaaaaa 2302
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>gb|AC137822.30| Medicago truncatula clone mth2-31e20, complete sequence
          Length = 140561

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 118    attgttaaatagcccactgg 137
              ||||||||||||||||||||
Sbjct: 115645 attgttaaatagcccactgg 115626
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>gb|CP000133.1| Rhizobium etli CFN 42, complete genome
          Length = 4381608

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 223     ctgagcgtcacccagagcacgtgc 246
               |||||||||||||||||| |||||
Sbjct: 2534190 ctgagcgtcacccagagcccgtgc 2534167
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>gb|AC148965.3| Medicago truncatula chromosome 7 BAC clone mth2-10f21, complete
             sequence
          Length = 97477

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 118   attgttaaatagcccactgg 137
             ||||||||||||||||||||
Sbjct: 15778 attgttaaatagcccactgg 15759
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 211      ccgcccttcatcctgagcgtcacc 234
                |||||||||||||| |||||||||
Sbjct: 41892410 ccgcccttcatcctcagcgtcacc 41892433
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>gb|AC013726.7| Homo sapiens BAC clone RP11-400N9 from 2, complete sequence
          Length = 214647

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 27     agcccaaatggaccatccct 46
              ||||||||||||||||||||
Sbjct: 199628 agcccaaatggaccatccct 199609
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>dbj|AP003735.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1147A04
          Length = 150053

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 211    ccgcccttcatcctgagcgtcacc 234
              |||||||||||||| |||||||||
Sbjct: 135786 ccgcccttcatcctcagcgtcacc 135809


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,980,051
Number of Sequences: 3902068
Number of extensions: 1980051
Number of successful extensions: 35824
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 35763
Number of HSP's gapped (non-prelim): 61
length of query: 256
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 234
effective length of database: 17,147,199,772
effective search space: 4012444746648
effective search space used: 4012444746648
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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