ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart07c01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YBV2_SCHPO (O94644) Hypothetical protein C21.02 in chromosome II 32 0.64
2OX2R_CANFA (Q9TUP7) Orexin receptor type 2 (Ox2r) (Hypocretin re... 30 2.4
3ACHD_CHICK (P02717) Acetylcholine receptor protein, delta subuni... 30 3.2
4VL2_BPV2 (P06457) Minor capsid protein L2 29 7.1
5SAHH_YEAST (P39954) Adenosylhomocysteinase (EC 3.3.1.1) (S-adeno... 28 9.2
6LEC1_DOLBI (P05045) Seed lectin subunit I precursor (SL) [Contai... 28 9.2
7CDSN_MACMU (Q5TM45) Corneodesmosin precursor 28 9.2

>YBV2_SCHPO (O94644) Hypothetical protein C21.02 in chromosome II|
          Length = 511

 Score = 32.3 bits (72), Expect = 0.64
 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = -2

Query: 355 SDFA*LSRKLRQAVCRFNRP*SVWSVVGLATEYNPVFLRIVMYVIPNKNMNV-SSLVLTI 179
           +DFA LS  +   +C F  P SVW V GL + +   F    MY +  K  N  +  +L I
Sbjct: 271 NDFAILSPLIHAQICFF-LPKSVWQVNGLTSLFRASFHGYSMYALERKMCNYHNPSILLI 329

Query: 178 AVQKI 164
             +KI
Sbjct: 330 KAKKI 334



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>OX2R_CANFA (Q9TUP7) Orexin receptor type 2 (Ox2r) (Hypocretin receptor type 2)|
          Length = 444

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +2

Query: 134 SAPEEDELQDYFLNSNRQD*GGYIHVFVRDYIHNNSQENWVV 259
           SAPE +E Q+ FLN    D   ++    R+Y+H    E WV+
Sbjct: 17  SAPELNETQEPFLNPTDYDDEEFLRYLWREYLHPKEYE-WVL 57



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>ACHD_CHICK (P02717) Acetylcholine receptor protein, delta subunit precursor|
          Length = 513

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 57  FAPRSTNLPKVQDHFAPRPQESNIAGQHLRKMN 155
           FAP +T+  ++ DH  P   E+N   +H+R+ N
Sbjct: 417 FAPAATSEEQLYDHLKPTLDEANFIVKHMREKN 449



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>VL2_BPV2 (P06457) Minor capsid protein L2|
          Length = 467

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 18/52 (34%), Positives = 21/52 (40%)
 Frame = -3

Query: 408 GSSACEALAATNGGNPKAPISPSFHGS*DKLCADSIAPDPYGPSLAWQRNTT 253
           GS    AL    G +   P     +GS D   A  + PD   PSL    NTT
Sbjct: 382 GSGVRRALIPGQGFSATRPTGVVTYGSPDMYPASPVGPDSTSPSLVIDDNTT 433



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>SAHH_YEAST (P39954) Adenosylhomocysteinase (EC 3.3.1.1)|
           (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
          Length = 449

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = +3

Query: 39  KMHMKNFAPRSTNLPKVQDHFAPRPQESNIAGQHLR 146
           K H+ N   R T L KVQ  +   P+E      H R
Sbjct: 413 KFHLGNLGVRLTKLSKVQSEYLGIPEEGPFKADHYR 448



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>LEC1_DOLBI (P05045) Seed lectin subunit I precursor (SL) [Contains: Seed|
           lectin subunit II]
          Length = 275

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 6/82 (7%)
 Frame = +2

Query: 56  FCSKVNKLAQSTGPFCSKTTRIKHSWSAPEEDELQDYF------LNSNRQD*GGYIHVFV 217
           + S +    +STG   S  T      SAP +    D        + S  +  GGY+ VF 
Sbjct: 72  YSSPIQIYDKSTGAVASWATSFTVKISAPSKASFADGIAFALVPVGSEPRRNGGYLGVFD 131

Query: 218 RDYIHNNSQENWVVFRCQANDG 283
            D  +N++Q   V F   +N G
Sbjct: 132 SDVYNNSAQTVAVEFDTFSNSG 153



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>CDSN_MACMU (Q5TM45) Corneodesmosin precursor|
          Length = 534

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -3

Query: 420 HGTGGSSACEALAATNGGNPKAPISP 343
           HG+GG    + L  +NGG P  P  P
Sbjct: 265 HGSGGPGVVQGLPCSNGGLPGKPCPP 290


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,801,299
Number of Sequences: 219361
Number of extensions: 1700850
Number of successful extensions: 4619
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4618
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3130907202
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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