Clone Name | rbart07c01 |
---|---|
Clone Library Name | barley_pub |
>YBV2_SCHPO (O94644) Hypothetical protein C21.02 in chromosome II| Length = 511 Score = 32.3 bits (72), Expect = 0.64 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 1/65 (1%) Frame = -2 Query: 355 SDFA*LSRKLRQAVCRFNRP*SVWSVVGLATEYNPVFLRIVMYVIPNKNMNV-SSLVLTI 179 +DFA LS + +C F P SVW V GL + + F MY + K N + +L I Sbjct: 271 NDFAILSPLIHAQICFF-LPKSVWQVNGLTSLFRASFHGYSMYALERKMCNYHNPSILLI 329 Query: 178 AVQKI 164 +KI Sbjct: 330 KAKKI 334
>OX2R_CANFA (Q9TUP7) Orexin receptor type 2 (Ox2r) (Hypocretin receptor type 2)| Length = 444 Score = 30.4 bits (67), Expect = 2.4 Identities = 16/42 (38%), Positives = 23/42 (54%) Frame = +2 Query: 134 SAPEEDELQDYFLNSNRQD*GGYIHVFVRDYIHNNSQENWVV 259 SAPE +E Q+ FLN D ++ R+Y+H E WV+ Sbjct: 17 SAPELNETQEPFLNPTDYDDEEFLRYLWREYLHPKEYE-WVL 57
>ACHD_CHICK (P02717) Acetylcholine receptor protein, delta subunit precursor| Length = 513 Score = 30.0 bits (66), Expect = 3.2 Identities = 12/33 (36%), Positives = 20/33 (60%) Frame = +3 Query: 57 FAPRSTNLPKVQDHFAPRPQESNIAGQHLRKMN 155 FAP +T+ ++ DH P E+N +H+R+ N Sbjct: 417 FAPAATSEEQLYDHLKPTLDEANFIVKHMREKN 449
>VL2_BPV2 (P06457) Minor capsid protein L2| Length = 467 Score = 28.9 bits (63), Expect = 7.1 Identities = 18/52 (34%), Positives = 21/52 (40%) Frame = -3 Query: 408 GSSACEALAATNGGNPKAPISPSFHGS*DKLCADSIAPDPYGPSLAWQRNTT 253 GS AL G + P +GS D A + PD PSL NTT Sbjct: 382 GSGVRRALIPGQGFSATRPTGVVTYGSPDMYPASPVGPDSTSPSLVIDDNTT 433
>SAHH_YEAST (P39954) Adenosylhomocysteinase (EC 3.3.1.1)| (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) Length = 449 Score = 28.5 bits (62), Expect = 9.2 Identities = 13/36 (36%), Positives = 16/36 (44%) Frame = +3 Query: 39 KMHMKNFAPRSTNLPKVQDHFAPRPQESNIAGQHLR 146 K H+ N R T L KVQ + P+E H R Sbjct: 413 KFHLGNLGVRLTKLSKVQSEYLGIPEEGPFKADHYR 448
>LEC1_DOLBI (P05045) Seed lectin subunit I precursor (SL) [Contains: Seed| lectin subunit II] Length = 275 Score = 28.5 bits (62), Expect = 9.2 Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 6/82 (7%) Frame = +2 Query: 56 FCSKVNKLAQSTGPFCSKTTRIKHSWSAPEEDELQDYF------LNSNRQD*GGYIHVFV 217 + S + +STG S T SAP + D + S + GGY+ VF Sbjct: 72 YSSPIQIYDKSTGAVASWATSFTVKISAPSKASFADGIAFALVPVGSEPRRNGGYLGVFD 131 Query: 218 RDYIHNNSQENWVVFRCQANDG 283 D +N++Q V F +N G Sbjct: 132 SDVYNNSAQTVAVEFDTFSNSG 153
>CDSN_MACMU (Q5TM45) Corneodesmosin precursor| Length = 534 Score = 28.5 bits (62), Expect = 9.2 Identities = 11/26 (42%), Positives = 14/26 (53%) Frame = -3 Query: 420 HGTGGSSACEALAATNGGNPKAPISP 343 HG+GG + L +NGG P P P Sbjct: 265 HGSGGPGVVQGLPCSNGGLPGKPCPP 290 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 76,801,299 Number of Sequences: 219361 Number of extensions: 1700850 Number of successful extensions: 4619 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 4533 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4618 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3130907202 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)