>UPS1_ARATH (Q9ZPR7) Ureide permease 1 (AtUPS1)|
          Length = 390

 Score =  115 bits (288), Expect = 5e-26
 Identities = 58/95 (61%), Positives = 69/95 (72%)
 Frame = -1

Query: 436 TLRAYLADGEGRGRALLAGMVSGLGNAFTFMXXXXXXXXXADSVQALPLVSTFWGVVLFG 257
           + +AYL D  GRG + LAG + G GN   FM         AD+VQALPLVSTFWG++LFG
Sbjct: 296 SFKAYLNDWNGRGWSFLAGFLCGFGNGLQFMGGQAAGYAAADAVQALPLVSTFWGILLFG 355

Query: 256 EYRRSSRRTYTLLGSMLFXXVVAMSVLMASSAHRK 152
           EYRRSSR+TYTLL SML   +VA++VLMASS HRK
Sbjct: 356 EYRRSSRKTYTLLISMLLMFIVAVAVLMASSGHRK 390

>UPS4_ARATH (Q9ZQ88) Ureide permease 4 (AtUPS4)|
          Length = 401

 Score =  112 bits (281), Expect = 3e-25
 Identities = 56/95 (58%), Positives = 68/95 (71%)
 Frame = -1

Query: 436 TLRAYLADGEGRGRALLAGMVSGLGNAFTFMXXXXXXXXXADSVQALPLVSTFWGVVLFG 257
           +L+ Y+ D +GRG A+ AG + G GN   FM         ADSVQALPLVSTFWG+VLFG
Sbjct: 307 SLKKYIYDSKGRGWAVFAGFLCGFGNGLQFMGGQAAGYAAADSVQALPLVSTFWGIVLFG 366

Query: 256 EYRRSSRRTYTLLGSMLFXXVVAMSVLMASSAHRK 152
           EYR+SS+RTY LL SML   V A+++LMASS HRK
Sbjct: 367 EYRKSSKRTYALLVSMLAMFVAAVAILMASSGHRK 401

>UPS2_ARATH (Q9ZQ89) Ureide permease 2 (AtUPS2)|
          Length = 398

 Score =  112 bits (279), Expect = 5e-25
 Identities = 59/95 (62%), Positives = 66/95 (69%)
 Frame = -1

Query: 436 TLRAYLADGEGRGRALLAGMVSGLGNAFTFMXXXXXXXXXADSVQALPLVSTFWGVVLFG 257
           + +AYL D  GR  A LAG + G GN   FM         ADSVQALPLVSTFWGVVLFG
Sbjct: 304 SFKAYLNDWNGRYWAFLAGFLCGFGNGLQFMGGQAAGYAAADSVQALPLVSTFWGVVLFG 363

Query: 256 EYRRSSRRTYTLLGSMLFXXVVAMSVLMASSAHRK 152
           EYRRSSR+TY LL  MLF  + A++VLMASS HRK
Sbjct: 364 EYRRSSRKTYLLLFCMLFMFISAVAVLMASSGHRK 398

>UPS5_ARATH (Q93Z75) Ureide permease 5 (AtUPS5)|
          Length = 413

 Score =  103 bits (257), Expect = 2e-22
 Identities = 52/95 (54%), Positives = 63/95 (66%)
 Frame = -1

Query: 436 TLRAYLADGEGRGRALLAGMVSGLGNAFTFMXXXXXXXXXADSVQALPLVSTFWGVVLFG 257
           + R YL+D  GRG AL AG++ G GN   FM         +D+VQALPLVSTFWG+ LFG
Sbjct: 315 SFREYLSDWNGRGWALAAGLLCGFGNGLQFMGGQAAGYAASDAVQALPLVSTFWGIYLFG 374

Query: 256 EYRRSSRRTYTLLGSMLFXXVVAMSVLMASSAHRK 152
           EYRRSS RTY LL  ML    VA+ +LMAS+  R+
Sbjct: 375 EYRRSSTRTYALLVGMLVMFTVAVGLLMASAGERE 409

>UPSA3_VIGUN (Q41706) Probable ureide permease A3 (VuA3) (Fragment)|
          Length = 376

 Score = 66.6 bits (161), Expect = 3e-11
 Identities = 35/70 (50%), Positives = 44/70 (62%)
 Frame = -1

Query: 436 TLRAYLADGEGRGRALLAGMVSGLGNAFTFMXXXXXXXXXADSVQALPLVSTFWGVVLFG 257
           +L+AYLAD +GR  ALLAG++ G GN+  FM             +   L   FWGV+LFG
Sbjct: 306 SLKAYLADSDGRIWALLAGLLCGFGNSLQFMGGQAAGYQQQSLCRHF-LCKHFWGVLLFG 364

Query: 256 EYRRSSRRTY 227
           EYRRSSR+TY
Sbjct: 365 EYRRSSRKTY 374

>Y2503_LACPL (Q88UI3) Putative sugar uptake protein lp_2503|
          Length = 285

 Score = 42.4 bits (98), Expect = 5e-04
 Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
 Frame = -1

Query: 397 RALLAGMVSGLGNAFTFMXXXXXXXXXADSVQALPLV-STFWGVVLFGEYRRSSRRTYTL 221
           R ++ G+V G+GN F FM         A S+  + +V STF  + L GE++      Y +
Sbjct: 208 RNIVTGLVWGIGNLFMFMAMAQIGQAVAYSLSQMGIVISTFGSIYLLGEHKTKREMVYVV 267

Query: 220 LGSML-FXXVVAMSVLMA 170
           +GS+L     VA+S++ A
Sbjct: 268 IGSILVIVGGVALSLMKA 285

>UPS3_ARATH (Q9ZPR6) Ureide permease 3 (AtUPS3)|
          Length = 344

 Score = 35.8 bits (81), Expect = 0.047
 Identities = 18/45 (40%), Positives = 23/45 (51%)
 Frame = -1

Query: 436 TLRAYLADGEGRGRALLAGMVSGLGNAFTFMXXXXXXXXXADSVQ 302
           + +AYL D  GRG + LAG + G GN   FM         A +VQ
Sbjct: 267 SFKAYLNDWNGRGWSFLAGFLCGFGNGLQFMGGQAAGYAAAGAVQ 311

>YXFA_LACLA (Q9CDF7) Putative sugar uptake protein yxfA|
          Length = 295

 Score = 32.7 bits (73), Expect = 0.40
 Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
 Frame = -1

Query: 391 LLAGMVSGLGNAFTFMXXXXXXXXXADSVQAL-PLVSTFWGVVLFGEYRRSSRRTYTLLG 215
           ++ G + G+GN F  M         A S   L  +VST  G++  GE +      Y  +G
Sbjct: 218 MIVGAMWGVGNIFMLMAASAAGNAIAFSFSQLGVIVSTIGGILFLGEKKTKKELVYVGIG 277

Query: 214 SMLFXXVVAMSVLMA 170
            +LF   V  ++L+A
Sbjct: 278 IVLF---VTGAILLA 289

>GCH1_RHOBA (Q7UJJ7) GTP cyclohydrolase I (EC 3.5.4.16) (GTP-CH-I)|
          Length = 229

 Score = 29.6 bits (65), Expect = 3.4
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +3

Query: 45  YTTSVLIEELASLSAVAIQAPDRHAMHEQRWLRQSGFLCAEEAM 176
           +T + LIE+  S   VA+     H+    R +R+ G LC   AM
Sbjct: 163 HTVANLIEDRLSARGVAVVVESTHSCMTMRGIRKPGSLCLTSAM 206

>TDPZ2_MOUSE (Q717B2) TD and POZ domain-containing protein 2|
          Length = 364

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
 Frame = -3

Query: 137 PTLLMHGMA---IGSLDSDGREASKFFDEDGCCVNLDECDACHIL 12
           PTL  H MA   + + D  G E  K   ED  C NL   +A H L
Sbjct: 252 PTLHSHSMACDVLAAADKYGLEGLKVICEDSLCRNLSVENAAHTL 296

>Y2157_STRA5 (Q8DWQ7) Putative sugar uptake protein SAG2157|
          Length = 288

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 14/64 (21%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = -1

Query: 391 LLAGMVSGLGNAFTFMXXXXXXXXXADSVQAL-PLVSTFWGVVLFGEYRRSSRRTYTLLG 215
           ++ G++ G+GN F  +         A S   L  ++S   G++  GE +    + + ++G
Sbjct: 212 MITGLMWGVGNVFMLLAAAKAGLAIAFSFSQLGVIISIIGGILFLGETKTKKEQKWVVMG 271

Query: 214 SMLF 203
            + F
Sbjct: 272 ILCF 275

>Y2116_STRA3 (Q8E2K6) Putative sugar uptake protein gbs2116|
          Length = 288

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 14/64 (21%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = -1

Query: 391 LLAGMVSGLGNAFTFMXXXXXXXXXADSVQAL-PLVSTFWGVVLFGEYRRSSRRTYTLLG 215
           ++ G++ G+GN F  +         A S   L  ++S   G++  GE +    + + ++G
Sbjct: 212 MITGLMWGVGNVFMLLAAAKAGLAIAFSFSQLGVIISIIGGILFLGETKTKKEQKWVVMG 271

Query: 214 SMLF 203
            + F
Sbjct: 272 ILCF 275

>Y220_BACC1 (P61403) Putative sugar uptake protein BCE0220|
          Length = 283

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = -1

Query: 397 RALLAGMVSGLGNAFTFMXXXXXXXXXADSVQALPLV-STFWGVVLFGEYRRSSRRTYTL 221
           R  L+G++ G GN F  +         +  +    +V STF  +V  GE +   +  +  
Sbjct: 206 RNALSGLLWGTGNLFLLLSLPRVGVATSFPLSQTGIVISTFGAIVFLGEKKTKRQLIFIA 265

Query: 220 LGSML 206
           LGS+L
Sbjct: 266 LGSVL 270

>Y219_BACCR (Q81IX5) Putative sugar uptake protein BC_0219|
          Length = 283

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = -1

Query: 397 RALLAGMVSGLGNAFTFMXXXXXXXXXADSVQALPLV-STFWGVVLFGEYRRSSRRTYTL 221
           R  L+G++ G GN F  +         +  +    +V STF  +V  GE +   +  +  
Sbjct: 206 RNALSGLLWGTGNLFLLLSLPRVGVATSFPLSQTGIVISTFGAIVFLGEKKTKRQLIFIA 265

Query: 220 LGSML 206
           LGS+L
Sbjct: 266 LGSVL 270

>Y200_BACAN (Q81VJ7) Putative sugar uptake protein BA0200/GBAA0200/BAS0200|
          Length = 283

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = -1

Query: 397 RALLAGMVSGLGNAFTFMXXXXXXXXXADSVQALPLV-STFWGVVLFGEYRRSSRRTYTL 221
           R  L+G++ G GN F  +         +  +    +V STF  +V  GE +   +  +  
Sbjct: 206 RNALSGLLWGTGNLFLLLSLPRVGVATSFPLSQTGIVISTFGAIVFLGEKKTKRQLIFIA 265

Query: 220 LGSML 206
           LGS+L
Sbjct: 266 LGSVL 270

>GLCU_BACME (P40419) Probable glucose uptake protein glcU|
          Length = 286

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
 Frame = -1

Query: 397 RALLAGMVSGLGNAFTFMXXXXXXXXXADSVQALPLV-STFWGVVLFGEYRRSSRRTYTL 221
           R ++ G++   GN F F+         + S+  + +V ST  G+++ GE +   +    +
Sbjct: 209 RNIIPGLIWAAGNMFLFISQPKVGVATSFSLSQMGIVISTLGGIIILGEKKTKRQLVGII 268

Query: 220 LGSMLFXXVVAMSVLMAS 167
           +G +L      M  L  S
Sbjct: 269 IGIILIIIAGVMLGLAKS 286


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,210,582
Number of Sequences: 219361
Number of extensions: 536517
Number of successful extensions: 1811
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1809
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2570413340
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)