>VAX2_MOUSE (Q9WTP9) Ventral anterior homeobox 2 (Ventral retina homeodomain|
           protein)
          Length = 292

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
 Frame = +3

Query: 291 ALMIHVPGFPGLAETHR-----NPVHSLPRLASTGIASAAWPKP 407
           +L+   PG PGL  +HR     +P +S PRL     ASA+ P P
Sbjct: 199 SLLALTPGLPGLPASHRGTSLVDPRNSSPRLNPMPSASASSPLP 242

>SYI_ENTFA (Q836V1) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 926

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 20/62 (32%), Positives = 25/62 (40%)
 Frame = +2

Query: 11  WSFIYSMEKLLQLATQCNKPSRHALKQQESIFKTWMHLHLHLQEKN*FRDEVLKTRRHAA 190
           WSF+   E+ +QLA     P       +E +  TW            FRD VLK    A 
Sbjct: 767 WSFLQEEEEYVQLA---EFPGYETFTNEEELMDTWAAFMD-------FRDNVLKALEEAR 816

Query: 191 HS 196
           HS
Sbjct: 817 HS 818

>MURB_TREPA (O83128) UDP-N-acetylenolpyruvoylglucosamine reductase (EC|
           1.1.1.158) (UDP-N-acetylmuramate dehydrogenase)
          Length = 354

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
 Frame = -2

Query: 463 GSPTITQTVWTTFPNDTDFGFGHAALAMP--VDANLGRLCTGFLCVSAKPGNP 311
           G P    +  T F    D+G+  +    P  V+ + GR     LCV   PGNP
Sbjct: 186 GGPFTCSSFQTVFARAGDWGYKRSPFQSPHGVELHAGRRLILSLCVRLTPGNP 238

>EURL_MOUSE (Q9D7G4) Protein EURL homolog|
          Length = 290

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 2   KANWSFIYSMEKLLQLATQCNKPSRHAL 85
           K NW   Y+  K L L ++C+K S+H L
Sbjct: 93  KINWIVQYAQNKNLDLESECSKTSQHPL 120

>RL11_ENCCU (Q8SSG9) 60S ribosomal protein L11|
          Length = 165

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = -2

Query: 427 FPNDTDFGFG---HAALAMPVDANLGRLCTGFLCVSAKPGN 314
           F N+  FGFG   H  L +  D N+G     F  + A+PG+
Sbjct: 88  FSNNGCFGFGIEEHIDLGLKYDPNIGIFGMDFFVILARPGD 128

>BPA1_HUMAN (Q03001) Bullous pemphigoid antigen 1 isoforms 1/2/3/4/5/8 (230 kDa|
           bullous pemphigoid antigen) (BPA) (Hemidesmosomal plaque
           protein) (Dystonia musculorum protein) (Dystonin)
           (Fragment)
          Length = 3214

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = +3

Query: 312 GFPGLAETHRNPVHSLPRLASTG 380
           GFP LAET ++P+  LP +AS G
Sbjct: 11  GFPRLAETLQHPMCPLPLVASAG 33

>MGR5_RAT (P31424) Metabotropic glutamate receptor 5 precursor (mGluR5)|
          Length = 1203

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -2

Query: 370  ANLGRLCTGFLCVSAKPGNPGTWIISAFIWPR 275
            AN+  L +  L  +A PG PGT I S+++ P+
Sbjct: 1066 ANISELNSMMLSTAATPGPPGTPICSSYLIPK 1097

>ARPA_ECOLI (P23325) Ankyrin-repeat protein A (Ankyrin-like regulatory protein)|
          Length = 728

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 17/42 (40%), Positives = 26/42 (61%)
 Frame = -2

Query: 343 FLCVSAKPGNPGTWIISAFIWPRLAAALESDQQRVFKPLTAE 218
           FL +S K  N  T I++A   P+LAA    D ++V+K L+A+
Sbjct: 435 FLAISRKDKNVVTSILNAL--PKLAATHHLDNEQVYKFLSAK 474

>VAX2_HUMAN (Q9UIW0) Ventral anterior homeobox 2|
          Length = 290

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
 Frame = +3

Query: 291 ALMIHVPGFPGLAETHR-----NPVHSLPRLASTGIASAAWPKP 407
           +L+   P  PGL  +HR     +P +S PRL     ASA+ P P
Sbjct: 199 SLLALTPSLPGLPASHRGTSLGDPRNSSPRLNPLSSASASPPLP 242

>SALM_DROVI (P39806) Homeotic protein spalt-major|
          Length = 1402

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 309 PGFPGLAETHRNPVHSLPRLASTGIASAAWPKP 407
           P FPGL   +R P+  L  L +T  ++A  P P
Sbjct: 548 PAFPGLPGIYRPPMELLKSLGATAGSTAGLPHP 580


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,821,570
Number of Sequences: 219361
Number of extensions: 1146606
Number of successful extensions: 3293
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3292
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3014947676
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)