ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart07b09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GSTU6_ORYSA (Q06398) Probable glutathione S-transferase GSTU6 (E... 38 0.009
2GSTX2_MAIZE (P50472) Probable glutathione S-transferase BZ2 (EC ... 35 0.10
3GSTU1_ORYSA (O65032) Probable glutathione S-transferase GSTU1 (E... 32 0.85
4AMYG_NEUCR (P14804) Glucoamylase precursor (EC 3.2.1.3) (Glucan ... 29 5.5

>GSTU6_ORYSA (Q06398) Probable glutathione S-transferase GSTU6 (EC 2.5.1.18) (28|
           kDa cold-induced protein)
          Length = 236

 Score = 38.1 bits (87), Expect = 0.009
 Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
 Frame = -3

Query: 429 VVGGTVSYVHAVARVSGERLFQDEGRTPLRAAWLRRFGELDAAVELL-QDVDRVVDY 262
           V+GG + +  A+ ++ G RL  D  RTP  AAW  RF   DAA  ++  D D+++++
Sbjct: 168 VLGGYLGWFTAIDKLIGRRLI-DPARTPALAAWEERFRATDAAKGVVPDDADKLLEF 223



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>GSTX2_MAIZE (P50472) Probable glutathione S-transferase BZ2 (EC 2.5.1.18)|
           (Protein bronze-2)
          Length = 236

 Score = 34.7 bits (78), Expect = 0.10
 Identities = 19/52 (36%), Positives = 27/52 (51%)
 Frame = -3

Query: 405 VHAVARVSGERLFQDEGRTPLRAAWLRRFGELDAAVELLQDVDRVVDYVRFI 250
           + A  R+ G  L  D   TPL   W +RF    AA  +L D ++VV + RF+
Sbjct: 175 LRACERLHGLSLI-DASATPLLDGWSQRFAAHPAAKRVLPDTEKVVQFTRFL 225



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>GSTU1_ORYSA (O65032) Probable glutathione S-transferase GSTU1 (EC 2.5.1.18)|
          Length = 231

 Score = 31.6 bits (70), Expect = 0.85
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -3

Query: 369 FQDEGRTPLRAAWLRRFGELDAAVELLQDVDRVVDYV 259
           F  E   P  AAW RR G +D+ V+ L   ++V D+V
Sbjct: 185 FSVEEVAPRLAAWARRCGRIDSVVKHLPSPEKVYDFV 221



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>AMYG_NEUCR (P14804) Glucoamylase precursor (EC 3.2.1.3) (Glucan|
           1,4-alpha-glucosidase) (1,4-alpha-D-glucan
           glucohydrolase)
          Length = 626

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 335 AARSGVLPSSWNSLSPETLATACTYDTV 418
           A R+G++P SW + S  +L  +C+  TV
Sbjct: 462 ARRAGIVPPSWGAASANSLPGSCSASTV 489


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,486,997
Number of Sequences: 219361
Number of extensions: 883043
Number of successful extensions: 2020
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1994
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2020
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2453576370
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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