>emb|AL162418.17| Human DNA sequence from clone RP11-335H2 on chromosome 9 Contains part
             of the gene for a novel protein similar to basonuclin
             (BNC) (FLJ34928) and a LSM1 homolog, U6 small nuclear RNA
             associated (S. cerevisiae) pseudogene, complete sequence
          Length = 57850

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 201   tgaaacaaagcttacaagcttac 223
             |||||||||||||||||||||||
Sbjct: 12097 tgaaacaaagcttacaagcttac 12075

>gb|AC115011.27| Mus musculus chromosome 1, clone RP24-192A11, complete sequence
          Length = 173802

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 33    atgaacaagttcataaccatgc 54
             ||||||||||||||||||||||
Sbjct: 67473 atgaacaagttcataaccatgc 67494

>gb|AC168117.2| Mus musculus BAC clone RP23-461G13 from chromosome 17, complete
             sequence
          Length = 169205

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 269   aatattgtgttctcagttcatgcaa 293
             ||||||||| |||||||||||||||
Sbjct: 73835 aatattgtggtctcagttcatgcaa 73811

>gb|AC098721.3| Mus musculus BAC clone RP23-2O23 from 2, complete sequence
          Length = 219368

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 255   agcatcaaaattccaatattg 275
             |||||||||||||||||||||
Sbjct: 35505 agcatcaaaattccaatattg 35525

>emb|AL158165.15| Human DNA sequence from clone RP11-476E15 on chromosome 10 Contains the
              3' end of the SORBS1 gene for sorbin and SH3 domain
              containing 1 and a novel gene (KIAA0894), complete sequence
          Length = 169358

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 106    tctaataattagcttcatcaa 126
              |||||||||||||||||||||
Sbjct: 111577 tctaataattagcttcatcaa 111557

>ref|XM_777072.1| PREDICTED: Strongylocentrotus purpuratus similar to 60S ribosomal
           protein L22 (Heparin binding protein HBp15) (LOC576803),
           mRNA
          Length = 639

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 379 gtacctcttggagaaagcagtctca 403
           ||||||||||||||||||| |||||
Sbjct: 285 gtacctcttggagaaagcaatctca 261

>emb|BX936296.17| Mouse DNA sequence from clone RP23-27J1 on chromosome 2, complete
              sequence
          Length = 188273

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 255    agcatcaaaattccaatattg 275
              |||||||||||||||||||||
Sbjct: 166362 agcatcaaaattccaatattg 166342

>gb|AC113509.14| Mus musculus chromosome 1, clone RP23-377L11, complete sequence
          Length = 193588

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 389    gagaaagcagtctcattcac 408
              ||||||||||||||||||||
Sbjct: 180672 gagaaagcagtctcattcac 180653

>gb|AC120366.9| Mus musculus chromosome 1, clone RP24-294P1, complete sequence
          Length = 156784

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 389    gagaaagcagtctcattcac 408
              ||||||||||||||||||||
Sbjct: 136366 gagaaagcagtctcattcac 136385

>emb|BX927068.14| Zebrafish DNA sequence from clone CH211-152F2 in linkage group 1,
             complete sequence
          Length = 150851

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 448   tccattttctttgagaaact 467
             ||||||||||||||||||||
Sbjct: 73132 tccattttctttgagaaact 73151

>gb|AC124745.4| Mus musculus BAC clone RP23-236O12 from 14, complete sequence
          Length = 143589

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 334    atagtcttcagcgaggtatggtgc 357
              |||||||||||| |||||||||||
Sbjct: 103751 atagtcttcagctaggtatggtgc 103774

>gb|U97193.1| Caenorhabditis elegans cosmid C06A5, complete sequence
          Length = 42054

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 392   aaagcagtctcattcaccat 411
             ||||||||||||||||||||
Sbjct: 30840 aaagcagtctcattcaccat 30821

>emb|Z83846.1|HS415G2 Human DNA sequence from clone CTA-415G2 on chromosome 22 Contains the 5'
              end of the SYN3 gene for Synapsin III, a novel pseudogene
              and a CpG island, complete sequence
          Length = 129957

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 107    ctaataattagcttcatcaa 126
              ||||||||||||||||||||
Sbjct: 126554 ctaataattagcttcatcaa 126535

>emb|AL840643.1| Human DNA sequence from clone RP11-442N24 on chromosome 1 Contains
            the 3' end of the gene for a novel protein (FLJ13171),
            complete sequence
          Length = 21972

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 194  agaacactgaaacaaagctt 213
            ||||||||||||||||||||
Sbjct: 8930 agaacactgaaacaaagctt 8911

>gb|AC010715.6| Drosophila melanogaster 3L BAC RP98-9G21 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 174551

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 284   gttcatgcaaatatgaatct 303
             ||||||||||||||||||||
Sbjct: 30807 gttcatgcaaatatgaatct 30788

>gb|BC102848.1| Bos taurus similar to Protein C11orf33 precursor, mRNA (cDNA clone
            MGC:127492 IMAGE:7953401), complete cds
          Length = 2364

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 386  ttggagaaagcagtctcatt 405
            ||||||||||||||||||||
Sbjct: 1980 ttggagaaagcagtctcatt 1999

>ref|NM_059337.2| Caenorhabditis elegans RiNg Finger protein family member (rnf-1)
           (rnf-1) mRNA, complete cds
          Length = 1263

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 392 aaagcagtctcattcaccat 411
           ||||||||||||||||||||
Sbjct: 423 aaagcagtctcattcaccat 442

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
              complete sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 375    atatgtacctcttggagaaa 394
              ||||||||||||||||||||
Sbjct: 412447 atatgtacctcttggagaaa 412428

>gb|AC159375.1| Pan troglodytes BAC clone CH251-557H18 from chromosome unknown,
             complete sequence
          Length = 184511

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 107   ctaataattagcttcatcaa 126
             ||||||||||||||||||||
Sbjct: 22509 ctaataattagcttcatcaa 22490

>gb|AC157654.2| Mus musculus BAC clone RP24-286J10 from chromosome 13, complete
             sequence
          Length = 152221

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 168   tcaaacagccaacatttagt 187
             ||||||||||||||||||||
Sbjct: 47369 tcaaacagccaacatttagt 47350

>emb|BX324157.4| Zebrafish DNA sequence from clone DKEY-15N1 in linkage group 3, complete
              sequence
          Length = 272769

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 49     ccatgccatgctttcttctc 68
              ||||||||||||||||||||
Sbjct: 231904 ccatgccatgctttcttctc 231923

>dbj|AP002863.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0005A05
          Length = 190834

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 375    atatgtacctcttggagaaa 394
              ||||||||||||||||||||
Sbjct: 164285 atatgtacctcttggagaaa 164266

>dbj|AP002845.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0482C06
          Length = 182779

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 375   atatgtacctcttggagaaa 394
             ||||||||||||||||||||
Sbjct: 52648 atatgtacctcttggagaaa 52629

>gb|AC151994.3| Mus musculus BAC clone RP23-188B20 from 14, complete sequence
          Length = 208952

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 334   atagtcttcagcgaggtatggtgc 357
             |||||||||||| |||||||||||
Sbjct: 79996 atagtcttcagctaggtatggtgc 80019

>gb|AE003564.3| Drosophila melanogaster chromosome 3L, section 21 of 83 of the complete
              sequence
          Length = 315944

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 284    gttcatgcaaatatgaatct 303
              ||||||||||||||||||||
Sbjct: 295271 gttcatgcaaatatgaatct 295252

>dbj|AP000764.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-811N23, complete
              sequence
          Length = 216203

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 395    gcagtctcattcaccatgaa 414
              ||||||||||||||||||||
Sbjct: 110349 gcagtctcattcaccatgaa 110368

>gb|AC102480.8| Mus musculus chromosome 3, clone RP24-423L4, complete sequence
          Length = 189940

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 112   aattagcttcatcaagcattaaca 135
             ||||||||||||||| ||||||||
Sbjct: 43738 aattagcttcatcaaccattaaca 43715

>ref|NM_001034503.1| Bos taurus similar to Protein C11orf33 precursor (MGC127492), mRNA
          Length = 2364

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 386  ttggagaaagcagtctcatt 405
            ||||||||||||||||||||
Sbjct: 1980 ttggagaaagcagtctcatt 1999


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,600,149
Number of Sequences: 3902068
Number of extensions: 4600149
Number of successful extensions: 133422
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 133321
Number of HSP's gapped (non-prelim): 101
length of query: 467
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 445
effective length of database: 17,147,199,772
effective search space: 7630503898540
effective search space used: 7630503898540
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)