Clone Name | rbart07b07 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | 5E5_RAT (Q63003) 5E5 antigen | 30 | 4.6 | 2 | NFL_COTJA (Q02916) Neurofilament triplet L protein (Neurofilamen... | 29 | 6.0 |
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>5E5_RAT (Q63003) 5E5 antigen| Length = 825 Score = 29.6 bits (65), Expect = 4.6 Identities = 19/67 (28%), Positives = 23/67 (34%) Frame = -1 Query: 483 RQGRQDLXXXXXXXXXXXXRYPQEASRQEAAHQAVGAGEEGHARQEGPRQEGQEVESPSS 304 R+GR P E + A G G G AR GPRQ+ + P Sbjct: 445 RKGRMGRQLETTATSASATGGPAEEAGASAPEGQAGGGPRGRAR--GPRQQARRRHGPQR 502 Query: 303 RNEFPLA 283 R P A Sbjct: 503 RRGPPQA 509
>NFL_COTJA (Q02916) Neurofilament triplet L protein (Neurofilament light| polypeptide) (NF-L) Length = 555 Score = 29.3 bits (64), Expect = 6.0 Identities = 13/32 (40%), Positives = 19/32 (59%) Frame = -1 Query: 417 QEASRQEAAHQAVGAGEEGHARQEGPRQEGQE 322 +EA +EA + GA EE +EG +EG+E Sbjct: 486 EEAGGEEAEEEEEGAKEESEEGKEGEEEEGEE 517 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,802,588 Number of Sequences: 219361 Number of extensions: 711045 Number of successful extensions: 1923 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 1873 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1921 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3465624120 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)