ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart07b06 |
|---|---|
| Clone Library Name | barley_pub |
>RNPS1_RAT (Q6AYK1) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 28.9 bits (63), Expect = 6.2 Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 2/72 (2%) Frame = -3 Query: 416 GGSKTVVHRSDGNGGGTTRALLEFTASE--SRTKVVLSGSSYHTKSDSSGTRCGPVVDDA 243 G KT RS +G +TR+ T+S S + SGSS + S SG+ + Sbjct: 58 GRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSS 117 Query: 242 SLVCVPPAPARR 207 S P+P+RR Sbjct: 118 SSSSGSPSPSRR 129
>RNPS1_PONPY (Q5NVM8) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 28.9 bits (63), Expect = 6.2 Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 2/72 (2%) Frame = -3 Query: 416 GGSKTVVHRSDGNGGGTTRALLEFTASE--SRTKVVLSGSSYHTKSDSSGTRCGPVVDDA 243 G KT RS +G +TR+ T+S S + SGSS + S SG+ + Sbjct: 58 GRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSS 117 Query: 242 SLVCVPPAPARR 207 S P+P+RR Sbjct: 118 SSSSGSPSPSRR 129
>RNPS1_MOUSE (Q99M28) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 28.9 bits (63), Expect = 6.2 Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 2/72 (2%) Frame = -3 Query: 416 GGSKTVVHRSDGNGGGTTRALLEFTASE--SRTKVVLSGSSYHTKSDSSGTRCGPVVDDA 243 G KT RS +G +TR+ T+S S + SGSS + S SG+ + Sbjct: 58 GRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSS 117 Query: 242 SLVCVPPAPARR 207 S P+P+RR Sbjct: 118 SSSSGSPSPSRR 129
>RNPS1_MACFA (Q4R5N1) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 28.9 bits (63), Expect = 6.2 Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 2/72 (2%) Frame = -3 Query: 416 GGSKTVVHRSDGNGGGTTRALLEFTASE--SRTKVVLSGSSYHTKSDSSGTRCGPVVDDA 243 G KT RS +G +TR+ T+S S + SGSS + S SG+ + Sbjct: 58 GRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSS 117 Query: 242 SLVCVPPAPARR 207 S P+P+RR Sbjct: 118 SSSSGSPSPSRR 129
>RNPS1_HUMAN (Q15287) RNA-binding protein with serine-rich domain 1 (SR-related| protein LDC2) Length = 305 Score = 28.9 bits (63), Expect = 6.2 Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 2/72 (2%) Frame = -3 Query: 416 GGSKTVVHRSDGNGGGTTRALLEFTASE--SRTKVVLSGSSYHTKSDSSGTRCGPVVDDA 243 G KT RS +G +TR+ T+S S + SGSS + S SG+ + Sbjct: 58 GRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSS 117 Query: 242 SLVCVPPAPARR 207 S P+P+RR Sbjct: 118 SSSSGSPSPSRR 129
>CK021_HUMAN (Q9P2W6) Protein C11orf21| Length = 132 Score = 28.5 bits (62), Expect = 8.1 Identities = 12/21 (57%), Positives = 13/21 (61%), Gaps = 2/21 (9%) Frame = +2 Query: 287 TWCGSWSRRAP--PSSGFRWP 343 TWCG W RR P S+ RWP Sbjct: 4 TWCGMWRRRRPGRRSAVPRWP 24
>PLO1_SCHPO (P50528) Serine/threonine-protein kinase plo1 (EC 2.7.11.21)| Length = 683 Score = 28.5 bits (62), Expect = 8.1 Identities = 10/19 (52%), Positives = 14/19 (73%) Frame = -1 Query: 139 RFTFCGLANFLAPEILFRN 83 + T CG N++APEILF + Sbjct: 195 KMTICGTPNYIAPEILFNS 213 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,591,768 Number of Sequences: 219361 Number of extensions: 927439 Number of successful extensions: 3679 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 3505 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3672 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2735358828 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
