ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart07a12 |
|---|---|
| Clone Library Name | barley_pub |
>DISC_DROME (P23792) Protein disconnected| Length = 568 Score = 32.7 bits (73), Expect = 0.54 Identities = 19/56 (33%), Positives = 28/56 (50%) Frame = +3 Query: 108 RKSTMMMFLLMVLYTRIKETKT*HQNYNKSKHVHQKVQARRVHRLRIPNHHRKGLH 275 + S M LL +Y R KT HQ YN + Q+ Q + H L + +HH++ H Sbjct: 478 KDSPPMWSLLSEMY-RSMLLKTQHQQYNHHHQLQQQHQQEQHHHLTLSHHHQEQHH 532
>ALG14_CANAL (Q5A5N6) UDP-N-acetylglucosamine transferase subunit ALG14 (EC| 2.4.1.-) (Asparagine linked glycosylation protein 14) Length = 219 Score = 32.3 bits (72), Expect = 0.71 Identities = 16/35 (45%), Positives = 26/35 (74%) Frame = -1 Query: 402 RHRPALRLPSLGPGAVVPVGHLLLSVWPLIGLCSS 298 +HRPA+ L + GPG VPV ++L ++ L+GLC++ Sbjct: 138 KHRPAVILLN-GPGTCVPVAYILF-LYKLLGLCNT 170
>CRED_ECOLI (P08369) Inner membrane protein creD| Length = 450 Score = 31.6 bits (70), Expect = 1.2 Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 4/58 (6%) Frame = -1 Query: 480 PASRAHQGVRRLQGGLQEGQWRIQHHRHRPALRLPSLGPGAVVPVGH----LLLSVWP 319 P + QG + + L EG WR Q+ + AL L G +VVP G L S WP Sbjct: 170 PGTGLEQGGQGVHIPLPEGDWRKQNLKLNMALNLSGTGDLSVVPGGRNSEMTLTSNWP 227
>EZH2_MOUSE (Q61188) Enhancer of zeste homolog 2 (ENX-1)| Length = 746 Score = 31.2 bits (69), Expect = 1.6 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%) Frame = +2 Query: 80 LFVQELNSNSQINNDDVFIDG--PVHTDQGNKDLTPKLQQIETCPSK 214 +FV+ +N+ Q N+DD DG P ++ KDL ETCP + Sbjct: 170 IFVELVNALGQYNDDDDDDDGDDPDEREEKQKDLEDNRDDKETCPPR 216
>EXOC_AZOBR (P45632) Phosphomannomutase (EC 5.4.2.8) (PMM)| Length = 469 Score = 30.8 bits (68), Expect = 2.1 Identities = 17/61 (27%), Positives = 28/61 (45%) Frame = +2 Query: 83 FVQELNSNSQINNDDVFIDGPVHTDQGNKDLTPKLQQIETCPSKGTSAQSSSTPDTESPS 262 +V S+ Q++ D +++ + D G +DLT I G S + + PD E P Sbjct: 141 YVSGEGSSEQLDIKDAYVERLLRDDDGTRDLT-----IAWDAGNGASGEDPAPPDREVPG 195 Query: 263 K 265 K Sbjct: 196 K 196
>CL190_DROME (Q9VJE5) Restin homolog (Cytoplasmic linker protein 190)| (Microtubule-binding protein 190) (d-CLIP-190) Length = 1690 Score = 30.4 bits (67), Expect = 2.7 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%) Frame = +2 Query: 197 ETCPSKGTSAQSSSTPDTESPSKRSTR*IPKHRTELHK-PINGHTDSSRC 343 E CP +G+ Q STP +ES + R +P R + GH D+S C Sbjct: 1636 EDCPIQGSEDQDYSTPSSESNNNEKERKLPAPRKYCDSCEVFGH-DTSEC 1684
>CSPG2_RAT (Q9ERB4) Versican core protein precursor (Large fibroblast| proteoglycan) (Chondroitin sulfate proteoglycan core protein 2) (PG-M) (Glial hyaluronate-binding protein) (GHAP) (Fragments) Length = 2738 Score = 29.6 bits (65), Expect = 4.6 Identities = 14/54 (25%), Positives = 26/54 (48%) Frame = +2 Query: 125 DVFIDGPVHTDQGNKDLTPKLQQIETCPSKGTSAQSSSTPDTESPSKRSTR*IP 286 + + + P H G D+ P L + +K + + S P+TE+P + + IP Sbjct: 844 ETYPETPEHFSSGEPDVFPTLPSHDGKTTKWSEFITESNPNTENPEHKQPKPIP 897
>RCOR2_BRARE (Q6P116) REST corepressor 2| Length = 536 Score = 29.3 bits (64), Expect = 6.0 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 2/66 (3%) Frame = +2 Query: 68 SDARLFVQELNSNSQINNDDVFIDG--PVHTDQGNKDLTPKLQQIETCPSKGTSAQSSST 241 S R ELN ++++ +D+V +DG P H+D L E S S+ SS Sbjct: 396 SSGRTVNTELNGSAELEDDEVKMDGISPPHSDS-------PLPSSEGSASGNHSSAQSSP 448 Query: 242 PDTESP 259 P T+ P Sbjct: 449 PLTQPP 454
>SRCH_HUMAN (P23327) Sarcoplasmic reticulum histidine-rich calcium-binding| protein precursor Length = 699 Score = 29.3 bits (64), Expect = 6.0 Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 1/77 (1%) Frame = +3 Query: 177 HQNYNKSKHVHQKVQA-RRVHRLRIPNHHRKGLHDESPNIEQNCTNQSMATLIAVDVLQE 353 HQ + H ++V+A H +P+H +G DE + + + Q Sbjct: 316 HQAHRHQDHRKEEVEAVSGEHHHHVPDHRHQGHRDEEEDEDVSTERWH----------QG 365 Query: 354 PQHQDPDWVDEEQDDAD 404 PQH VDEE+++ + Sbjct: 366 PQHVHHGLVDEEEEEEE 382
>ZNFX1_HUMAN (Q9P2E3) NFX1-type zinc finger-containing protein 1| Length = 1918 Score = 29.3 bits (64), Expect = 6.0 Identities = 15/39 (38%), Positives = 18/39 (46%) Frame = -1 Query: 420 WRIQHHRHRPALRLPSLGPGAVVPVGHLLLSVWPLIGLC 304 WR QH++ P P VP LL+ P IGLC Sbjct: 1516 WRCQHYQCTKLCSEPCNRPPCYVPCTKLLVCGHPCIGLC 1554
>ALR_AQUPY (Q9RER4) Alanine racemase (EC 5.1.1.1)| Length = 341 Score = 28.9 bits (63), Expect = 7.8 Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 10/110 (9%) Frame = +3 Query: 153 RIKETKT*HQNYNKSKHVHQKVQARRVHRLRIPNHHRKGL--HDESP----NIEQNCTNQ 314 +IK + +NY K K++H + A ++R+ H R GL + E P +E + Sbjct: 158 QIKRFEEILKNYEKVKYIHLESSAGLIYRVPFTTHVRVGLAIYGEKPLKDYPLEVKPALR 217 Query: 315 SMATLIAVDVLQE--PQHQDPDWVDEEQDDADGV--GYAIGLPEGLPEAS 452 A LI+V L E P ++ + + V GYA GL + L S Sbjct: 218 LRARLISVKELPENYPVSYGRTYITKRKTKLGVVAFGYADGLMKTLSNRS 267
>CJ012_HUMAN (Q8N655) Protein C10orf12| Length = 1247 Score = 28.9 bits (63), Expect = 7.8 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 2/63 (3%) Frame = +2 Query: 155 DQGNKDLTPKL--QQIETCPSKGTSAQSSSTPDTESPSKRSTR*IPKHRTELHKPINGHT 328 ++G D++P+ Q+ E CP+K SSS E+ + +P H E P G T Sbjct: 266 EEGGGDVSPRKEPQEPEVCPTKIKPNLSSSPRSEETTASSLVWPLPAHLPEEDLPEGGST 325 Query: 329 DSS 337 S+ Sbjct: 326 VSA 328
>LAT_HUMAN (O43561) Linker for activation of T-cells family member 1 (36 kDa| phospho-tyrosine adapter protein) (pp36) (p36-38) Length = 262 Score = 28.9 bits (63), Expect = 7.8 Identities = 16/46 (34%), Positives = 22/46 (47%) Frame = +3 Query: 315 SMATLIAVDVLQEPQHQDPDWVDEEQDDADGVGYAIGLPEGLPEAS 452 S L V + EP +D DE++DD GY + LP+ P S Sbjct: 131 SWTRLTPVSLPPEPACED---ADEDEDDYHNPGYLVVLPDSTPATS 173
>FAM9B_HUMAN (Q8IZU0) Protein FAM9B| Length = 186 Score = 28.9 bits (63), Expect = 7.8 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 5/54 (9%) Frame = +3 Query: 153 RIKETKT*HQNYNKSKHVHQKVQARR-----VHRLRIPNHHRKGLHDESPNIEQ 299 R+K KT + NKSKH +K Q +R +H L++ N + + DE E+ Sbjct: 69 RMKMDKTCSKTKNKSKHALRKKQLKRQKRDYIHSLKLLNVLEEYITDEQKEEEE 122 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 74,221,543 Number of Sequences: 219361 Number of extensions: 1591420 Number of successful extensions: 5098 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 4842 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5093 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3465624120 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
