ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart07a12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY057118.1| Triticum aestivum cold acclimation protein WCOR41... 488 e-135
2ref|XM_469914.1| Oryza sativa (japonica cultivar-group), mRNA 129 9e-27
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 129 9e-27
4gb|AC107207.9| Oryza sativa chromosome 3 BAC OSJNBb0106M04 genom... 129 9e-27
5gb|AC099043.6| Oryza sativa chromosome 3 BAC OSJNBa0079B15 genom... 129 9e-27
6gb|AF283006.1| Oryza sativa (japonica cultivar-group) cold accli... 129 9e-27
7dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 129 9e-27
8dbj|AK066036.1| Oryza sativa (japonica cultivar-group) cDNA clon... 129 9e-27
9dbj|AK060906.1| Oryza sativa (japonica cultivar-group) cDNA clon... 129 9e-27
10dbj|AK060000.1| Oryza sativa (japonica cultivar-group) cDNA clon... 129 9e-27
11gb|BT017742.1| Zea mays clone EL01N0449E04.c mRNA sequence 119 9e-24
12gb|AY181208.1| Zea mays cold acclimation protein COR413-PM1 mRNA... 119 9e-24
13gb|AY106041.1| Zea mays PCO103483 mRNA sequence 119 9e-24
14gb|U73216.1|TAU73216 Triticum aestivum cold acclimation protein ... 111 2e-21
15gb|AY112320.1| Zea mays CL360_-2 mRNA sequence 56 1e-04
16gb|AC027506.12| Homo sapiens chromosome 18, clone RP11-762J3, co... 46 0.11
17gb|AC137970.10| Mus musculus chromosome 3, clone RP23-438E13, co... 44 0.43
18gb|AC102196.7| Mus musculus chromosome 3, clone RP24-445M20, com... 44 0.43
19emb|CT009738.8| Mouse DNA sequence from clone RP23-217H9 on chro... 42 1.7
20gb|AC159814.2| Mus musculus BAC clone RP23-389H15 from chromosom... 42 1.7
21gb|AC099047.2| Homo sapiens chromosome 3 clone RP11-73I17, compl... 42 1.7
22gb|AC131013.2| Homo sapiens 3 BAC RP13-584I6 (Roswell Park Cance... 42 1.7
23dbj|AP001095.5| Homo sapiens genomic DNA, chromosome 18 clone:RP... 42 1.7
24gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome 40 6.7
25gb|AY796304.1| Homo sapiens transforming growth factor, beta rec... 40 6.7
26gb|AY713945.1| Gasterosteus aculeatus MHC class II antigen gene ... 40 6.7
27gb|AC115719.10| Mus musculus chromosome 18, clone RP24-356J16, c... 40 6.7
28gb|AC114539.8| Mus musculus chromosome 19, clone RP23-62I23, com... 40 6.7
29gb|AC099057.3| Homo sapiens chromosome 3 clone RP11-655N11, comp... 40 6.7
30emb|AL445992.15| Human DNA sequence from clone RP11-324C23 on ch... 40 6.7
31emb|AL360228.36| Human DNA sequence from clone RP11-439F21 on ch... 40 6.7
32gb|AC156982.8| Mus musculus chromosome 19, clone RP23-183N3, com... 40 6.7
33gb|AC008761.8| Homo sapiens chromosome 19 clone CTD-3149D2, comp... 40 6.7
34gb|AC011132.15| Homo sapiens chromosome 8, clone RP11-360M9, com... 40 6.7
35gb|AC158401.5| Mus musculus chromosome 7, clone RP23-84N6, compl... 40 6.7
36gb|AC154450.3| Mus musculus BAC clone RP24-169J2 from chromosome... 40 6.7
37gb|AY129330.1| Mycobacteriopahge Che8, complete sequence 40 6.7
38gb|AC157557.5| Mus musculus chromosome 7, clone RP24-369M22, com... 40 6.7
39gb|AC016152.39|AC016152 Homo sapiens 12 NOVECTOR RP11-1006M13 ()... 40 6.7
40gb|AC078929.27| Homo sapiens 12 BAC RP11-797M17 (Roswell Park Ca... 40 6.7
41dbj|BA000039.2| Thermosynechococcus elongatus BP-1 DNA, complete... 40 6.7
42dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 6.7 
>gb|AY057118.1| Triticum aestivum cold acclimation protein WCOR413-like protein
           beta form mRNA, complete cds
          Length = 993

 Score =  488 bits (246), Expect = e-135
 Identities = 323/348 (92%), Gaps = 8/348 (2%)
 Strand = Plus / Minus

                                                                       
Query: 156 atcaaggaaacaaagacctgacaccaaaactacaacaaatcgaaacatgtccatca-aaa 214
           ||||||||||||||||||| | |||| ||||||||||||||||||||||||||||| |||
Sbjct: 888 atcaaggaaacaaagacctcataccagaactacaacaaatcgaaacatgtccatcagaaa 829

                                                                       
Query: 215 ggtacaagcgcgcagagttcatcgactccgga-------taccgaatcaccatcgaaaag 267
           ||||||| || ||| ||||||||| |||||||       |||| ||||||||||||||  
Sbjct: 828 ggtacaaacgtgcacagttcatcggctccggacgagcaataccaaatcaccatcgaaagc 769

                                                                       
Query: 268 gtctacacgatgaatccccaaacatcgaacagaactgcacaaaccaatcaatggccacac 327
           |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 768 gtctacacgatgaatccccaaacagcgaacagaactgcacaagccaatcaatggccacac 709

                                                                       
Query: 328 tgatagcagtagatgtcctacaggaaccacagcaccaggacccagactgggtagacgaag 387
            |||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||
Sbjct: 708 cgatagcagtagatgtcctacaggagccagagcaccaggacccagactgggtaaacgaag 649

                                                                       
Query: 388 agcaggacgatgccgatggtgttggatacgccattggccttcctgaaggcctccctgaag 447
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 648 agcaggacgatgccgatggtgttggacacgccattggccttcctgaaggcctccctgaag 589

                                                           
Query: 448 cctcctgacaccctgatgtgctcttgaagcaggtagcacccgatggcg 495
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 cctcctgacaccctgatgtgctcttgaagcaggtagcacccgatggcg 541



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 53/61 (86%)
 Strand = Plus / Minus

                                                                       
Query: 112 aatcaacaatgatgatgtttttattgatggtcctgtacacacggatcaaggaaacaaaga 171
           |||||||| |||||||||||||||||||  |  ||||| |||  ||||||||||||||||
Sbjct: 966 aatcaacagtgatgatgtttttattgataattatgtacccacaaatcaaggaaacaaaga 907

            
Query: 172 c 172
           |
Sbjct: 906 c 906
to top
>ref|XM_469914.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1118

 Score =  129 bits (65), Expect = 9e-27
 Identities = 113/129 (87%)
 Strand = Plus / Minus

                                                                       
Query: 357 cagcaccaggacccagactgggtagacgaagagcaggacgatgccgatggtgttggatac 416
           |||||||||| ||||||| ||||||| |||||||| || |||||| ||| ||||||| ||
Sbjct: 755 cagcaccagggcccagacagggtagatgaagagcaagaggatgccaatgctgttggacac 696

                                                                       
Query: 417 gccattggccttcctgaaggcctccctgaagcctcctgacaccctgatgtgctcttgaag 476
            || ||| ||||||||||||| | |||||| || |||||| |||||||||||||||||||
Sbjct: 695 tccgttgcccttcctgaaggcgttcctgaatccacctgacgccctgatgtgctcttgaag 636

                    
Query: 477 caggtagca 485
           |||||||||
Sbjct: 635 caggtagca 627
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  129 bits (65), Expect = 9e-27
 Identities = 113/129 (87%)
 Strand = Plus / Minus

                                                                            
Query: 357      cagcaccaggacccagactgggtagacgaagagcaggacgatgccgatggtgttggatac 416
                |||||||||| ||||||| ||||||| |||||||| || |||||| ||| ||||||| ||
Sbjct: 31488972 cagcaccagggcccagacagggtagatgaagagcaagaggatgccaatgctgttggacac 31488913

                                                                            
Query: 417      gccattggccttcctgaaggcctccctgaagcctcctgacaccctgatgtgctcttgaag 476
                 || ||| ||||||||||||| | |||||| || |||||| |||||||||||||||||||
Sbjct: 31488912 tccgttgcccttcctgaaggcgttcctgaatccacctgacgccctgatgtgctcttgaag 31488853

                         
Query: 477      caggtagca 485
                |||||||||
Sbjct: 31488852 caggtagca 31488844
to top
>gb|AC107207.9| Oryza sativa chromosome 3 BAC OSJNBb0106M04 genomic sequence, complete
              sequence
          Length = 133449

 Score =  129 bits (65), Expect = 9e-27
 Identities = 113/129 (87%)
 Strand = Plus / Plus

                                                                          
Query: 357    cagcaccaggacccagactgggtagacgaagagcaggacgatgccgatggtgttggatac 416
              |||||||||| ||||||| ||||||| |||||||| || |||||| ||| ||||||| ||
Sbjct: 103624 cagcaccagggcccagacagggtagatgaagagcaagaggatgccaatgctgttggacac 103683

                                                                          
Query: 417    gccattggccttcctgaaggcctccctgaagcctcctgacaccctgatgtgctcttgaag 476
               || ||| ||||||||||||| | |||||| || |||||| |||||||||||||||||||
Sbjct: 103684 tccgttgcccttcctgaaggcgttcctgaatccacctgacgccctgatgtgctcttgaag 103743

                       
Query: 477    caggtagca 485
              |||||||||
Sbjct: 103744 caggtagca 103752
to top
>gb|AC099043.6| Oryza sativa chromosome 3 BAC OSJNBa0079B15 genomic sequence,
            complete sequence
          Length = 159091

 Score =  129 bits (65), Expect = 9e-27
 Identities = 113/129 (87%)
 Strand = Plus / Plus

                                                                        
Query: 357  cagcaccaggacccagactgggtagacgaagagcaggacgatgccgatggtgttggatac 416
            |||||||||| ||||||| ||||||| |||||||| || |||||| ||| ||||||| ||
Sbjct: 6828 cagcaccagggcccagacagggtagatgaagagcaagaggatgccaatgctgttggacac 6887

                                                                        
Query: 417  gccattggccttcctgaaggcctccctgaagcctcctgacaccctgatgtgctcttgaag 476
             || ||| ||||||||||||| | |||||| || |||||| |||||||||||||||||||
Sbjct: 6888 tccgttgcccttcctgaaggcgttcctgaatccacctgacgccctgatgtgctcttgaag 6947

                     
Query: 477  caggtagca 485
            |||||||||
Sbjct: 6948 caggtagca 6956
to top
>gb|AF283006.1| Oryza sativa (japonica cultivar-group) cold acclimation protein
           WCOR413-like protein mRNA, complete cds
          Length = 1057

 Score =  129 bits (65), Expect = 9e-27
 Identities = 113/129 (87%)
 Strand = Plus / Minus

                                                                       
Query: 357 cagcaccaggacccagactgggtagacgaagagcaggacgatgccgatggtgttggatac 416
           |||||||||| ||||||| ||||||| |||||||| || |||||| ||| ||||||| ||
Sbjct: 728 cagcaccagggcccagacagggtagatgaagagcaagaggatgccaatgctgttggacac 669

                                                                       
Query: 417 gccattggccttcctgaaggcctccctgaagcctcctgacaccctgatgtgctcttgaag 476
            || ||| ||||||||||||| | |||||| || |||||| |||||||||||||||||||
Sbjct: 668 tccgttgcccttcctgaaggcgttcctgaatccacctgacgccctgatgtgctcttgaag 609

                    
Query: 477 caggtagca 485
           |||||||||
Sbjct: 608 caggtagca 600
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  129 bits (65), Expect = 9e-27
 Identities = 113/129 (87%)
 Strand = Plus / Minus

                                                                            
Query: 357      cagcaccaggacccagactgggtagacgaagagcaggacgatgccgatggtgttggatac 416
                |||||||||| ||||||| ||||||| |||||||| || |||||| ||| ||||||| ||
Sbjct: 31579488 cagcaccagggcccagacagggtagatgaagagcaagaggatgccaatgctgttggacac 31579429

                                                                            
Query: 417      gccattggccttcctgaaggcctccctgaagcctcctgacaccctgatgtgctcttgaag 476
                 || ||| ||||||||||||| | |||||| || |||||| |||||||||||||||||||
Sbjct: 31579428 tccgttgcccttcctgaaggcgttcctgaatccacctgacgccctgatgtgctcttgaag 31579369

                         
Query: 477      caggtagca 485
                |||||||||
Sbjct: 31579368 caggtagca 31579360
to top
>dbj|AK066036.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013049B03, full
           insert sequence
          Length = 1116

 Score =  129 bits (65), Expect = 9e-27
 Identities = 113/129 (87%)
 Strand = Plus / Minus

                                                                       
Query: 357 cagcaccaggacccagactgggtagacgaagagcaggacgatgccgatggtgttggatac 416
           |||||||||| ||||||| ||||||| |||||||| || |||||| ||| ||||||| ||
Sbjct: 752 cagcaccagggcccagacagggtagatgaagagcaagaggatgccaatgctgttggacac 693

                                                                       
Query: 417 gccattggccttcctgaaggcctccctgaagcctcctgacaccctgatgtgctcttgaag 476
            || ||| ||||||||||||| | |||||| || |||||| |||||||||||||||||||
Sbjct: 692 tccgttgcccttcctgaaggcgttcctgaatccacctgacgccctgatgtgctcttgaag 633

                    
Query: 477 caggtagca 485
           |||||||||
Sbjct: 632 caggtagca 624
to top
>dbj|AK060906.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-F05, full
           insert sequence
          Length = 1031

 Score =  129 bits (65), Expect = 9e-27
 Identities = 113/129 (87%)
 Strand = Plus / Minus

                                                                       
Query: 357 cagcaccaggacccagactgggtagacgaagagcaggacgatgccgatggtgttggatac 416
           |||||||||| ||||||| ||||||| |||||||| || |||||| ||| ||||||| ||
Sbjct: 724 cagcaccagggcccagacagggtagatgaagagcaagaggatgccaatgctgttggacac 665

                                                                       
Query: 417 gccattggccttcctgaaggcctccctgaagcctcctgacaccctgatgtgctcttgaag 476
            || ||| ||||||||||||| | |||||| || |||||| |||||||||||||||||||
Sbjct: 664 tccgttgcccttcctgaaggcgttcctgaatccacctgacgccctgatgtgctcttgaag 605

                    
Query: 477 caggtagca 485
           |||||||||
Sbjct: 604 caggtagca 596
to top
>dbj|AK060000.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-G09, full
           insert sequence
          Length = 1061

 Score =  129 bits (65), Expect = 9e-27
 Identities = 113/129 (87%)
 Strand = Plus / Minus

                                                                       
Query: 357 cagcaccaggacccagactgggtagacgaagagcaggacgatgccgatggtgttggatac 416
           |||||||||| ||||||| ||||||| |||||||| || |||||| ||| ||||||| ||
Sbjct: 772 cagcaccagggcccagacagggtagatgaagagcaagaggatgccaatgctgttggacac 713

                                                                       
Query: 417 gccattggccttcctgaaggcctccctgaagcctcctgacaccctgatgtgctcttgaag 476
            || ||| ||||||||||||| | |||||| || |||||| |||||||||||||||||||
Sbjct: 712 tccgttgcccttcctgaaggcgttcctgaatccacctgacgccctgatgtgctcttgaag 653

                    
Query: 477 caggtagca 485
           |||||||||
Sbjct: 652 caggtagca 644
to top
>gb|BT017742.1| Zea mays clone EL01N0449E04.c mRNA sequence
          Length = 1064

 Score =  119 bits (60), Expect = 9e-24
 Identities = 108/124 (87%)
 Strand = Plus / Minus

                                                                       
Query: 368 cccagactgggtagacgaagagcaggacgatgccgatggtgttggatacgccattggcct 427
           ||||||| ||||||| ||||||||||| ||||||||||| |||||| || |||||| |||
Sbjct: 713 cccagacagggtagatgaagagcaggaggatgccgatggagttggacacaccattgccct 654

                                                                       
Query: 428 tcctgaaggcctccctgaagcctcctgacaccctgatgtgctcttgaagcaggtagcacc 487
           |||||||||| | |||||| || |||||| || ||||||| ||||| ||||||||||| |
Sbjct: 653 tcctgaaggcgttcctgaatccacctgacgccttgatgtgttcttggagcaggtagcatc 594

               
Query: 488 cgat 491
           ||||
Sbjct: 593 cgat 590
to top
>gb|AY181208.1| Zea mays cold acclimation protein COR413-PM1 mRNA, complete cds
          Length = 1126

 Score =  119 bits (60), Expect = 9e-24
 Identities = 108/124 (87%)
 Strand = Plus / Minus

                                                                       
Query: 368 cccagactgggtagacgaagagcaggacgatgccgatggtgttggatacgccattggcct 427
           ||||||| ||||||| ||||||||||| ||||||||||| |||||| || |||||| |||
Sbjct: 685 cccagacagggtagatgaagagcaggaggatgccgatggagttggacacaccattgccct 626

                                                                       
Query: 428 tcctgaaggcctccctgaagcctcctgacaccctgatgtgctcttgaagcaggtagcacc 487
           |||||||||| | |||||| || |||||| || ||||||| ||||| ||||||||||| |
Sbjct: 625 tcctgaaggcgttcctgaatccacctgacgccttgatgtgttcttggagcaggtagcatc 566

               
Query: 488 cgat 491
           ||||
Sbjct: 565 cgat 562
to top
>gb|AY106041.1| Zea mays PCO103483 mRNA sequence
          Length = 1220

 Score =  119 bits (60), Expect = 9e-24
 Identities = 108/124 (87%)
 Strand = Plus / Minus

                                                                       
Query: 368 cccagactgggtagacgaagagcaggacgatgccgatggtgttggatacgccattggcct 427
           ||||||| ||||||| ||||||||||| ||||||||||| |||||| || |||||| |||
Sbjct: 873 cccagacagggtagatgaagagcaggaggatgccgatggagttggacacaccattgccct 814

                                                                       
Query: 428 tcctgaaggcctccctgaagcctcctgacaccctgatgtgctcttgaagcaggtagcacc 487
           |||||||||| | |||||| || |||||| || ||||||| ||||| ||||||||||| |
Sbjct: 813 tcctgaaggcgttcctgaatccacctgacgccttgatgtgttcttggagcaggtagcatc 754

               
Query: 488 cgat 491
           ||||
Sbjct: 753 cgat 750
to top
>gb|U73216.1|TAU73216 Triticum aestivum cold acclimation protein WCOR413 (Wcor413) mRNA,
           complete cds
          Length = 896

 Score =  111 bits (56), Expect = 2e-21
 Identities = 125/148 (84%)
 Strand = Plus / Minus

                                                                       
Query: 345 ctacaggaaccacagcaccaggacccagactgggtagacgaagagcaggacgatgccgat 404
           ||||||||||||||  || | | ||||||| ||||||| |||||| |||| |||||||||
Sbjct: 696 ctacaggaaccacatgacgacggcccagaccgggtagatgaagaggaggaggatgccgat 637

                                                                       
Query: 405 ggtgttggatacgccattggccttcctgaaggcctccctgaagcctcctgacaccctgat 464
           |||||||||   |||||||| ||||  |||||||||| ||| ||| || ||| || ||||
Sbjct: 636 ggtgttggaccagccattgggcttctggaaggcctccttgaggccccccgacgccttgat 577

                                       
Query: 465 gtgctcttgaagcaggtagcacccgatg 492
           |||||| || ||||||||||||||||||
Sbjct: 576 gtgctcgtggagcaggtagcacccgatg 549
to top
>gb|AY112320.1| Zea mays CL360_-2 mRNA sequence
          Length = 661

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                   
Query: 452 ctgacaccctgatgtgctcttgaagcaggtagcacccgat 491
           ||||| |||||||||||||||| ||||||||||| |||||
Sbjct: 262 ctgacgccctgatgtgctcttggagcaggtagcatccgat 223
to top
>gb|AC027506.12| Homo sapiens chromosome 18, clone RP11-762J3, complete sequence
          Length = 189781

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 169   agacctgacaccaaaactacaac 191
             |||||||||||||||||||||||
Sbjct: 18044 agacctgacaccaaaactacaac 18066
to top
>gb|AC137970.10| Mus musculus chromosome 3, clone RP23-438E13, complete sequence
          Length = 212827

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 163   aaacaaagacctgacaccaaaa 184
             ||||||||||||||||||||||
Sbjct: 20577 aaacaaagacctgacaccaaaa 20556
to top
>gb|AC102196.7| Mus musculus chromosome 3, clone RP24-445M20, complete sequence
          Length = 166532

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 163   aaacaaagacctgacaccaaaa 184
             ||||||||||||||||||||||
Sbjct: 45002 aaacaaagacctgacaccaaaa 45023
to top
>emb|CT009738.8| Mouse DNA sequence from clone RP23-217H9 on chromosome 12, complete
             sequence
          Length = 209619

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 345   ctacaggaaccacagcaccag 365
             |||||||||||||||||||||
Sbjct: 22753 ctacaggaaccacagcaccag 22733
to top
>gb|AC159814.2| Mus musculus BAC clone RP23-389H15 from chromosome 12, complete
             sequence
          Length = 209280

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 345   ctacaggaaccacagcaccag 365
             |||||||||||||||||||||
Sbjct: 92501 ctacaggaaccacagcaccag 92481
to top
>gb|AC099047.2| Homo sapiens chromosome 3 clone RP11-73I17, complete sequence
          Length = 184296

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 2      ttttttgagacaaagctttgtccag 26
              |||||||||||||||||||| ||||
Sbjct: 122710 ttttttgagacaaagctttgaccag 122734
to top
>gb|AC131013.2| Homo sapiens 3 BAC RP13-584I6 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 77997

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 2     ttttttgagacaaagctttgtccag 26
             |||||||||||||||||||| ||||
Sbjct: 66330 ttttttgagacaaagctttgaccag 66306
to top
>dbj|AP001095.5| Homo sapiens genomic DNA, chromosome 18 clone:RP11-802O4, complete
              sequence
          Length = 187824

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 440    ccctgaagcctcctgacaccc 460
              |||||||||||||||||||||
Sbjct: 132987 ccctgaagcctcctgacaccc 133007
to top
>gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome
          Length = 2364842

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 381     gacgaagagcaggacgatgccgat 404
               ||||||||||| ||||||||||||
Sbjct: 1930168 gacgaagagcatgacgatgccgat 1930145
to top
>gb|AY796304.1| Homo sapiens transforming growth factor, beta receptor III (betaglycan,
              300kDa) (TGFBR3) gene, complete cds
          Length = 226174

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 425    ccttcctgaaggcctccctg 444
              ||||||||||||||||||||
Sbjct: 159484 ccttcctgaaggcctccctg 159465
to top
>gb|AY713945.1| Gasterosteus aculeatus MHC class II antigen gene cluster, complete
             sequence
          Length = 99318

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 304   gcacaaaccaatcaatggcc 323
             ||||||||||||||||||||
Sbjct: 81145 gcacaaaccaatcaatggcc 81164
to top
>gb|AC115719.10| Mus musculus chromosome 18, clone RP24-356J16, complete sequence
          Length = 177037

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 20    tgtccaggtcactaactata 39
             ||||||||||||||||||||
Sbjct: 67452 tgtccaggtcactaactata 67471
to top
>gb|AC114539.8| Mus musculus chromosome 19, clone RP23-62I23, complete sequence
          Length = 249767

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 2      ttttttgagacaaagctttg 21
              ||||||||||||||||||||
Sbjct: 239966 ttttttgagacaaagctttg 239947
to top
>gb|AC099057.3| Homo sapiens chromosome 3 clone RP11-655N11, complete sequence
          Length = 164323

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 2    ttttttgagacaaagctttg 21
            ||||||||||||||||||||
Sbjct: 3722 ttttttgagacaaagctttg 3703
to top
>emb|AL445992.15| Human DNA sequence from clone RP11-324C23 on chromosome 1 Contains part
             of the TGFBR3 gene fortransforming growth factor, beta
             receptor III (betaglycan, 300kDa), complete sequence
          Length = 34325

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 425   ccttcctgaaggcctccctg 444
             ||||||||||||||||||||
Sbjct: 34166 ccttcctgaaggcctccctg 34185
to top
>emb|AL360228.36| Human DNA sequence from clone RP11-439F21 on chromosome 6 Contains part
             of the gene for a novel protein (contains KIAA0680) and a
             CpG island, complete sequence
          Length = 36242

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 47    atataataagcagataacac 66
             ||||||||||||||||||||
Sbjct: 33147 atataataagcagataacac 33128
to top
>gb|AC156982.8| Mus musculus chromosome 19, clone RP23-183N3, complete sequence
          Length = 216311

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 2     ttttttgagacaaagctttg 21
             ||||||||||||||||||||
Sbjct: 14043 ttttttgagacaaagctttg 14024
to top
>gb|AC008761.8| Homo sapiens chromosome 19 clone CTD-3149D2, complete sequence
          Length = 226170

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 118   caatgatgatgtttttattgatgg 141
             ||||||||||||||||||| ||||
Sbjct: 92347 caatgatgatgtttttattaatgg 92324
to top
>gb|AC011132.15| Homo sapiens chromosome 8, clone RP11-360M9, complete sequence
          Length = 216334

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 158   caaggaaacaaagacctgac 177
             ||||||||||||||||||||
Sbjct: 92242 caaggaaacaaagacctgac 92223
to top
>gb|AC158401.5| Mus musculus chromosome 7, clone RP23-84N6, complete sequence
          Length = 247769

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 159  aaggaaacaaagacctgaca 178
            ||||||||||||||||||||
Sbjct: 1464 aaggaaacaaagacctgaca 1445
to top
>gb|AC154450.3| Mus musculus BAC clone RP24-169J2 from chromosome 12, complete sequence
          Length = 168477

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 118   caatgatgatgtttttattgatgg 141
             |||||||||| |||||||||||||
Sbjct: 96925 caatgatgatatttttattgatgg 96948
to top
>gb|AY129330.1| Mycobacteriopahge Che8, complete sequence
          Length = 59471

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 393   gacgatgccgatggtgttgg 412
             ||||||||||||||||||||
Sbjct: 58072 gacgatgccgatggtgttgg 58053
to top
>gb|AC157557.5| Mus musculus chromosome 7, clone RP24-369M22, complete sequence
          Length = 202543

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 159    aaggaaacaaagacctgaca 178
              ||||||||||||||||||||
Sbjct: 195672 aaggaaacaaagacctgaca 195653
to top
>gb|AC016152.39|AC016152 Homo sapiens 12 NOVECTOR RP11-1006M13 () complete sequence
          Length = 119220

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 2     ttttttgagacaaagctttg 21
             ||||||||||||||||||||
Sbjct: 43594 ttttttgagacaaagctttg 43575
to top
>gb|AC078929.27| Homo sapiens 12 BAC RP11-797M17 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 107895

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 360   caccaggacccagactgggt 379
             ||||||||||||||||||||
Sbjct: 35349 caccaggacccagactgggt 35368
to top
>dbj|BA000039.2| Thermosynechococcus elongatus BP-1 DNA, complete genome
          Length = 2593857

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 347     acaggaaccacagcaccagg 366
               ||||||||||||||||||||
Sbjct: 1645209 acaggaaccacagcaccagg 1645190
to top
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 382     acgaagagcaggacgatgccgatg 405
               |||||||||||| |||||||||||
Sbjct: 2496734 acgaagagcaggccgatgccgatg 2496711


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,648,872
Number of Sequences: 3902068
Number of extensions: 4648872
Number of successful extensions: 91519
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 91347
Number of HSP's gapped (non-prelim): 171
length of query: 495
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 473
effective length of database: 17,147,199,772
effective search space: 8110625492156
effective search space used: 8110625492156
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top