ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart07a09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LPXK_CAUCR (P58184) Tetraacyldisaccharide 4'-kinase (EC 2.7.1.13... 29 7.3
2LIPA2_BRAJA (Q89NW6) Lipoyl synthase 2 (EC 2.8.1.-) (Lipoic acid... 29 7.3

>LPXK_CAUCR (P58184) Tetraacyldisaccharide 4'-kinase (EC 2.7.1.130) (Lipid A|
           4'-kinase)
          Length = 335

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +1

Query: 115 TTHNEWPFVQAKVFPAFRCGQA*NWNLLGRDLVILAMPYD 234
           T   EWPF   +VFPA    +     L   D VI+ +P D
Sbjct: 167 TRGGEWPFGDGRVFPAGPMREPLKVGLSRADAVIVLLPVD 206



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>LIPA2_BRAJA (Q89NW6) Lipoyl synthase 2 (EC 2.8.1.-) (Lipoic acid synthase 2)|
           (Lipoate synthase 2) (Lipoyl-acyl-carrier protein
           synthase 2) (Sulfur insertion protein lipA2) (Lip-syn 2)
          Length = 322

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 480 DVLEREPRRSHRGDRPRLPQMEQRP 406
           D+L  +PR + R +RPR P+   RP
Sbjct: 6   DLLNNDPRTTQRTERPRHPEKANRP 30


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,836,396
Number of Sequences: 219361
Number of extensions: 1015680
Number of successful extensions: 2794
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2793
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3246866728
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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