ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart06h12 |
|---|---|
| Clone Library Name | barley_pub |
>RL3_ORYSA (P35684) 60S ribosomal protein L3| Length = 388 Score = 131 bits (330), Expect = 3e-31 Identities = 63/65 (96%), Positives = 65/65 (100%) Frame = -2 Query: 406 DYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRF 227 DYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKF+DTSSKFGHGRFQTTDEKQRF Sbjct: 323 DYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTDEKQRF 382 Query: 226 YGKLK 212 +GKLK Sbjct: 383 FGKLK 387
>RL3A_ARATH (P17094) 60S ribosomal protein L3| Length = 388 Score = 112 bits (281), Expect = 2e-25 Identities = 54/64 (84%), Positives = 59/64 (92%) Frame = -2 Query: 406 DYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRF 227 DYLMIKGCCVGPKKRVVTLRQSLL QTSRLALEEIKLKF+DT+S FGHGRFQT+ EK RF Sbjct: 323 DYLMIKGCCVGPKKRVVTLRQSLLTQTSRLALEEIKLKFIDTASIFGHGRFQTSLEKMRF 382 Query: 226 YGKL 215 Y ++ Sbjct: 383 YNRV 386
>RL3B_ARATH (P22738) 60S ribosomal protein L3| Length = 389 Score = 110 bits (276), Expect = 6e-25 Identities = 51/63 (80%), Positives = 58/63 (92%) Frame = -2 Query: 406 DYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRF 227 DYLMIKGCCVGPKKRVVTLRQ+LLKQTSRLA+EEIKLKF+D +S GHGRFQT+ EK +F Sbjct: 323 DYLMIKGCCVGPKKRVVTLRQTLLKQTSRLAMEEIKLKFIDAASNGGHGRFQTSQEKAKF 382 Query: 226 YGK 218 YG+ Sbjct: 383 YGR 385
>RL3_DROME (O16797) 60S ribosomal protein L3| Length = 415 Score = 98.6 bits (244), Expect = 3e-21 Identities = 45/65 (69%), Positives = 54/65 (83%) Frame = -2 Query: 406 DYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRF 227 D++MIKGCC+G KKR++TLR+SLLK T R ALE+IKLKF+DTSSK GHGRFQT +K F Sbjct: 328 DFVMIKGCCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQTPADKLAF 387 Query: 226 YGKLK 212 G LK Sbjct: 388 MGPLK 392
>RL3_RAT (P21531) 60S ribosomal protein L3 (L4)| Length = 402 Score = 95.9 bits (237), Expect = 2e-20 Identities = 45/65 (69%), Positives = 55/65 (84%) Frame = -2 Query: 406 DYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRF 227 D++M+KGC VG KKRV+TLR+SLL QT R ALE+I LKF+DT+SKFGHGRFQT +EK+ F Sbjct: 328 DFIMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAF 387 Query: 226 YGKLK 212 G LK Sbjct: 388 MGPLK 392
>RL3_MOUSE (P27659) 60S ribosomal protein L3 (J1 protein)| Length = 402 Score = 95.9 bits (237), Expect = 2e-20 Identities = 45/65 (69%), Positives = 55/65 (84%) Frame = -2 Query: 406 DYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRF 227 D++M+KGC VG KKRV+TLR+SLL QT R ALE+I LKF+DT+SKFGHGRFQT +EK+ F Sbjct: 328 DFIMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAF 387 Query: 226 YGKLK 212 G LK Sbjct: 388 MGPLK 392
>RL3_BOVIN (P39872) 60S ribosomal protein L3| Length = 402 Score = 95.9 bits (237), Expect = 2e-20 Identities = 45/65 (69%), Positives = 55/65 (84%) Frame = -2 Query: 406 DYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRF 227 D++M+KGC VG KKRV+TLR+SLL QT R ALE+I LKF+DT+SKFGHGRFQT +EK+ F Sbjct: 328 DFVMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTVEEKKAF 387 Query: 226 YGKLK 212 G LK Sbjct: 388 MGPLK 392
>RL3_MACFA (Q4R5Q0) 60S ribosomal protein L3| Length = 402 Score = 95.5 bits (236), Expect = 3e-20 Identities = 45/65 (69%), Positives = 55/65 (84%) Frame = -2 Query: 406 DYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRF 227 D++M+KGC VG KKRV+TLR+SLL QT R ALE+I LKF+DT+SKFGHGRFQT +EK+ F Sbjct: 328 DFVMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAF 387 Query: 226 YGKLK 212 G LK Sbjct: 388 MGPLK 392
>RL3_HUMAN (P39023) 60S ribosomal protein L3 (HIV-1 TAR RNA-binding protein B)| (TARBP-B) Length = 402 Score = 95.5 bits (236), Expect = 3e-20 Identities = 45/65 (69%), Positives = 55/65 (84%) Frame = -2 Query: 406 DYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRF 227 D++M+KGC VG KKRV+TLR+SLL QT R ALE+I LKF+DT+SKFGHGRFQT +EK+ F Sbjct: 328 DFVMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAF 387 Query: 226 YGKLK 212 G LK Sbjct: 388 MGPLK 392
>RL3_TOXCA (P49149) 60S ribosomal protein L3| Length = 401 Score = 94.7 bits (234), Expect = 5e-20 Identities = 44/65 (67%), Positives = 54/65 (83%) Frame = -2 Query: 406 DYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRF 227 D++MI+GCCVG KKR +TLR+SL+ QT R A E+I LK++DTSSKFGHGRFQT EK+ F Sbjct: 325 DFVMIRGCCVGSKKRPITLRKSLIVQTKRFAHEKINLKWIDTSSKFGHGRFQTHAEKRAF 384 Query: 226 YGKLK 212 GKLK Sbjct: 385 MGKLK 389
>RL3_CAEEL (P50880) 60S ribosomal protein L3| Length = 401 Score = 92.0 bits (227), Expect = 3e-19 Identities = 42/65 (64%), Positives = 55/65 (84%) Frame = -2 Query: 406 DYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRF 227 DY+M++G +GPKKR++TLR+SL+ QT R+A E+I LK++DTSSK GHGRFQTT EK+ F Sbjct: 326 DYIMLRGAVLGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAF 385 Query: 226 YGKLK 212 GKLK Sbjct: 386 MGKLK 390
>RL3_CAEBR (Q9NBK4) 60S ribosomal protein L3| Length = 401 Score = 91.7 bits (226), Expect = 4e-19 Identities = 42/65 (64%), Positives = 55/65 (84%) Frame = -2 Query: 406 DYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRF 227 DY+M++G +GPKKR++TLR+SL+ QT R+A E+I LK++DTSSK GHGRFQTT EK+ F Sbjct: 326 DYVMLRGAILGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAF 385 Query: 226 YGKLK 212 GKLK Sbjct: 386 MGKLK 390
>RL3L_BOVIN (Q3SZ10) 60S ribosomal protein L3-like| Length = 406 Score = 89.4 bits (220), Expect = 2e-18 Identities = 42/65 (64%), Positives = 51/65 (78%) Frame = -2 Query: 406 DYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRF 227 D++M+KGC G KKRV+TLR+SLL SR ALE I+LKF+DT+SKFGHGRFQT EK+ F Sbjct: 328 DFVMLKGCIAGTKKRVITLRKSLLVHHSRQALENIELKFIDTTSKFGHGRFQTAQEKRAF 387 Query: 226 YGKLK 212 G K Sbjct: 388 MGPQK 392
>RL3L_HUMAN (Q92901) 60S ribosomal protein L3-like| Length = 406 Score = 88.2 bits (217), Expect = 4e-18 Identities = 41/65 (63%), Positives = 51/65 (78%) Frame = -2 Query: 406 DYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRF 227 D++M+KGC G KKRV+TLR+SLL SR A+E I+LKF+DT+SKFGHGRFQT EK+ F Sbjct: 328 DFVMLKGCIAGTKKRVITLRKSLLVHHSRQAVENIELKFIDTTSKFGHGRFQTAQEKRAF 387 Query: 226 YGKLK 212 G K Sbjct: 388 MGPQK 392
>RL3_ASPFU (Q8NKF4) 60S ribosomal protein L3 (Allergen Asp f 23)| Length = 392 Score = 85.5 bits (210), Expect = 3e-17 Identities = 40/65 (61%), Positives = 52/65 (80%) Frame = -2 Query: 406 DYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRF 227 DY+M+KG G KKRV+TLR++L QTSR A E+++LK++DTSSKFGHG FQT +EK+ F Sbjct: 321 DYIMVKGSVPGVKKRVMTLRKTLYPQTSRRATEKVELKWIDTSSKFGHGAFQTPEEKRAF 380 Query: 226 YGKLK 212 G LK Sbjct: 381 MGTLK 385
>RL3_YEAST (P14126) 60S ribosomal protein L3 (YL1) (RP1) (Maintenance of| killer protein 8) (Trichodermin resistance protein) Length = 386 Score = 85.5 bits (210), Expect = 3e-17 Identities = 40/65 (61%), Positives = 50/65 (76%) Frame = -2 Query: 406 DYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRF 227 D++M+KGC G +KR+VTLR+SL TSR ALEE+ LK++DT+SKFG GRFQT EK F Sbjct: 319 DFIMVKGCIPGNRKRIVTLRKSLYTNTSRKALEEVSLKWIDTASKFGKGRFQTPAEKHAF 378 Query: 226 YGKLK 212 G LK Sbjct: 379 MGTLK 383
>RL3_DICDI (P34113) 60S ribosomal protein L3| Length = 397 Score = 85.1 bits (209), Expect = 4e-17 Identities = 37/65 (56%), Positives = 51/65 (78%) Frame = -2 Query: 406 DYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRF 227 ++LM+KGC GP+KR +TLR+S+ QT R ALE+I LKF+DTSSKFGHG QT ++K ++ Sbjct: 327 EFLMLKGCVAGPRKRALTLRKSITTQTGRAALEKITLKFIDTSSKFGHGLHQTAEDKTKY 386 Query: 226 YGKLK 212 +G K Sbjct: 387 FGVKK 391
>RL3B_SCHPO (P36584) 60S ribosomal protein L3-B| Length = 387 Score = 82.4 bits (202), Expect = 2e-16 Identities = 39/65 (60%), Positives = 50/65 (76%) Frame = -2 Query: 406 DYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRF 227 D++M+ G GP KRV+TLR+SLL TSR ALE + LK++DT+SKFGHGRFQT E ++F Sbjct: 319 DFVMLNGATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQF 378 Query: 226 YGKLK 212 G LK Sbjct: 379 LGTLK 383
>RL3A_SCHPO (P40372) 60S ribosomal protein L3-A| Length = 387 Score = 82.4 bits (202), Expect = 2e-16 Identities = 39/65 (60%), Positives = 50/65 (76%) Frame = -2 Query: 406 DYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRF 227 D++M+ G GP KRV+TLR+SLL TSR ALE + LK++DT+SKFGHGRFQT E ++F Sbjct: 319 DFVMLNGATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQF 378 Query: 226 YGKLK 212 G LK Sbjct: 379 LGTLK 383
>RL3_ASHGO (Q759R7) 60S ribosomal protein L3| Length = 388 Score = 82.0 bits (201), Expect = 3e-16 Identities = 40/65 (61%), Positives = 49/65 (75%) Frame = -2 Query: 406 DYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRF 227 D++M+KG G +KRVVTLR+SL TSR ALEE+ LK++DT+SKFG GRFQT EK F Sbjct: 321 DFVMVKGSIPGTRKRVVTLRKSLYTSTSRRALEEVNLKWIDTASKFGKGRFQTPAEKHAF 380 Query: 226 YGKLK 212 G LK Sbjct: 381 MGTLK 385
>RL3_NEUCR (P59671) 60S ribosomal protein L3| Length = 392 Score = 81.6 bits (200), Expect = 4e-16 Identities = 38/65 (58%), Positives = 52/65 (80%) Frame = -2 Query: 406 DYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRF 227 D++M+KG G KKRV+TLR+S+ TSR ALE+++LK++DTSS+FGHG FQT EK++F Sbjct: 321 DFVMVKGSVPGVKKRVMTLRKSMFVHTSRKALEKVELKWIDTSSEFGHGAFQTPAEKKQF 380 Query: 226 YGKLK 212 G LK Sbjct: 381 QGTLK 385
>RL3_ENCCU (Q8SQI3) 60S ribosomal protein L3| Length = 383 Score = 81.3 bits (199), Expect = 5e-16 Identities = 41/65 (63%), Positives = 51/65 (78%) Frame = -2 Query: 406 DYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRF 227 D++M+KG VG +KRVVTLR+SLL+Q A EE+ +KFVDTSSK GHGRFQT+ EK+ F Sbjct: 314 DFIMVKGAVVGARKRVVTLRKSLLRQR---AGEELVIKFVDTSSKIGHGRFQTSAEKKAF 370 Query: 226 YGKLK 212 YG K Sbjct: 371 YGARK 375
>RL3_CANGA (Q6FTJ2) 60S ribosomal protein L3| Length = 387 Score = 80.9 bits (198), Expect = 7e-16 Identities = 40/65 (61%), Positives = 49/65 (75%) Frame = -2 Query: 406 DYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRF 227 D++M+KG G KKRVVTLR+SL TSR A+EE+ LK++DT+SKFG GRFQT EK F Sbjct: 320 DFVMVKGSIPGCKKRVVTLRKSLYTNTSRKAVEEVTLKWIDTASKFGKGRFQTPAEKHAF 379 Query: 226 YGKLK 212 G LK Sbjct: 380 MGTLK 384
>RL3_KLULA (Q6CJR7) 60S ribosomal protein L3| Length = 387 Score = 79.7 bits (195), Expect = 2e-15 Identities = 39/65 (60%), Positives = 49/65 (75%) Frame = -2 Query: 406 DYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRF 227 D++++KG G +KRVVTLR+SL TSR ALEE+ LK++DT+SKFG GRFQT EK F Sbjct: 320 DFVILKGSIPGTRKRVVTLRKSLYTNTSRKALEEVTLKWIDTASKFGKGRFQTPAEKHAF 379 Query: 226 YGKLK 212 G LK Sbjct: 380 LGTLK 384
>RL3_DEBHA (Q6BXM5) 60S ribosomal protein L3| Length = 389 Score = 76.3 bits (186), Expect = 2e-14 Identities = 36/65 (55%), Positives = 47/65 (72%) Frame = -2 Query: 406 DYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRF 227 D++++KG G KKR+VT+R+SL TSR A E + LK++DT+SKFG GRFQT EK F Sbjct: 320 DFMLLKGSIPGVKKRIVTIRKSLYVDTSRRATENVNLKWIDTASKFGKGRFQTPAEKHAF 379 Query: 226 YGKLK 212 G LK Sbjct: 380 LGTLK 384
>RL3_METTH (O26110) 50S ribosomal protein L3P| Length = 337 Score = 35.0 bits (79), Expect = 0.042 Identities = 18/47 (38%), Positives = 30/47 (63%) Frame = -2 Query: 406 DYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTSSKFG 266 DY+MIKG GP KR+V LR+++ + + E ++ ++ T+SK G Sbjct: 292 DYVMIKGSVPGPTKRLVVLRKAI--RAAGKQEEAPQINYISTASKQG 336
>RL3_METJA (P54014) 50S ribosomal protein L3P| Length = 335 Score = 33.9 bits (76), Expect = 0.095 Identities = 16/47 (34%), Positives = 30/47 (63%) Frame = -2 Query: 406 DYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTSSKFG 266 +Y+++KG GP KR++ LR+++ Q + + EI ++ T+SK G Sbjct: 290 NYVVLKGSVQGPAKRLIVLRRAIRPQEPLIKVPEI--TYISTTSKQG 334
>RL3_METAC (Q8TRU7) 50S ribosomal protein L3P| Length = 337 Score = 32.3 bits (72), Expect = 0.28 Identities = 16/47 (34%), Positives = 26/47 (55%) Frame = -2 Query: 406 DYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTSSKFG 266 DY++IKG GP KR++ LR + + + L E + ++ SK G Sbjct: 293 DYILIKGSVPGPSKRLIRLRDPI--RAKKADLGEPNILYISRESKQG 337
>RL3_METMA (Q8PV50) 50S ribosomal protein L3P| Length = 337 Score = 32.0 bits (71), Expect = 0.36 Identities = 16/47 (34%), Positives = 26/47 (55%) Frame = -2 Query: 406 DYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTSSKFG 266 DY++IKG GP KR++ LR + + + L E + ++ SK G Sbjct: 293 DYVLIKGSVPGPSKRLIRLRDPI--RAKKADLGEPNILYISRESKQG 337
>HEM3_DESVH (Q72AV0) Porphobilinogen deaminase (EC 2.5.1.61) (PBG)| (Hydroxymethylbilane synthase) (HMBS) (Pre-uroporphyrinogen synthase) Length = 315 Score = 31.2 bits (69), Expect = 0.61 Identities = 26/65 (40%), Positives = 34/65 (52%), Gaps = 4/65 (6%) Frame = +2 Query: 194 LRSSSSLELAIKPLL----LVGGLETAVPKLGRGVDKLELDFLQCETRGLLQQGLAEGHH 361 LR S L LA++P L L G ++T + KL G E D + T GL + GLA HH Sbjct: 129 LRRQSQL-LALRPDLDIISLRGNVDTRLRKLMDG----EFDAIVMATAGLKRLGLAAPHH 183 Query: 362 TLLWP 376 +L P Sbjct: 184 EVLAP 188
>IPAC_SHIFL (P18012) Invasin ipaC (42 kDa antigen)| Length = 363 Score = 30.8 bits (68), Expect = 0.80 Identities = 16/50 (32%), Positives = 27/50 (54%) Frame = +2 Query: 200 SSSSLELAIKPLLLVGGLETAVPKLGRGVDKLELDFLQCETRGLLQQGLA 349 SS+++ L I +L+ L TA KLG + + D + +++QGLA Sbjct: 103 SSNAVSLIISVAVLLSALRTAETKLGSQLSLIAFDATKSAAENIVRQGLA 152
>IPAC_SHIDY (Q03946) Invasin ipaC (42 kDa antigen)| Length = 363 Score = 30.8 bits (68), Expect = 0.80 Identities = 16/50 (32%), Positives = 27/50 (54%) Frame = +2 Query: 200 SSSSLELAIKPLLLVGGLETAVPKLGRGVDKLELDFLQCETRGLLQQGLA 349 SS+++ L I +L+ L TA KLG + + D + +++QGLA Sbjct: 103 SSNAVSLIISVAVLLSALRTAETKLGSQLSLIAFDATKSAAENIVRQGLA 152
>RL3_METVA (Q9UWG2) 50S ribosomal protein L3P| Length = 334 Score = 30.4 bits (67), Expect = 1.0 Identities = 15/47 (31%), Positives = 26/47 (55%) Frame = -2 Query: 403 YLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTSSKFGH 263 Y+++KG GP KR+V LR ++ + L E+ ++ SK G+ Sbjct: 290 YVVVKGTVQGPAKRLVVLRGAVRPAEDKFGLPEV--TYISKESKQGN 334
>RL3_THEAC (Q9HIQ9) 50S ribosomal protein L3P| Length = 331 Score = 30.0 bits (66), Expect = 1.4 Identities = 14/47 (29%), Positives = 27/47 (57%) Frame = -2 Query: 406 DYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTSSKFG 266 DY+++ G G KR++ +R ++ + EE+KL+++ SK G Sbjct: 286 DYVLLFGSIPGASKRLIKMRDPARQKVPDI--EEVKLEYISLESKQG 330
>BPA1_MOUSE (Q91ZU6) Bullous pemphigoid antigen 1, isoforms 1/2/3/4 (BPA)| (Hemidesmosomal plaque protein) (Dystonia musculorum protein) (Dystonin) Length = 7389 Score = 29.6 bits (65), Expect = 1.8 Identities = 18/55 (32%), Positives = 33/55 (60%) Frame = +2 Query: 167 RFDKMTQLILRSSSSLELAIKPLLLVGGLETAVPKLGRGVDKLELDFLQCETRGL 331 R+ +T+L + +LE A++ L G L++ +L +DK+E++ L ET+GL Sbjct: 5516 RYKDITKLSADVAKTLEHALQ---LAGQLQSMHKELCNWLDKVEVELLSYETQGL 5567
>RL3_THEVO (Q97BX7) 50S ribosomal protein L3P| Length = 331 Score = 28.9 bits (63), Expect = 3.0 Identities = 13/47 (27%), Positives = 26/47 (55%) Frame = -2 Query: 406 DYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTSSKFG 266 DY+++ G GP KR++ +R ++ ++ +KL ++ SK G Sbjct: 286 DYVLLFGSVPGPAKRLIKMRDPARQKVP--DIDNVKLDYISLESKQG 330
>RL3_METKA (Q8TY90) 50S ribosomal protein L3P| Length = 361 Score = 28.9 bits (63), Expect = 3.0 Identities = 11/23 (47%), Positives = 17/23 (73%) Frame = -2 Query: 406 DYLMIKGCCVGPKKRVVTLRQSL 338 DY+MI G GPKKR++ +R ++ Sbjct: 296 DYIMIHGTVPGPKKRLIRVRPAV 318
>RL3_PYRKO (Q5JDJ0) 50S ribosomal protein L3P| Length = 346 Score = 28.9 bits (63), Expect = 3.0 Identities = 13/45 (28%), Positives = 25/45 (55%) Frame = -2 Query: 406 DYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTSSK 272 D+LMI+G G KR++ +R ++ + +E ++ +V SK Sbjct: 301 DFLMIEGTIPGSFKRIIRVRPAIRPPKKKPPVERPQITYVSRESK 345
>RL3_MYCPU (Q98PY0) 50S ribosomal protein L3| Length = 266 Score = 28.1 bits (61), Expect = 5.2 Identities = 13/38 (34%), Positives = 23/38 (60%) Frame = -2 Query: 400 LMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFV 287 L++KG GPKK V +++ K S+ A++ + L+ V Sbjct: 187 LLVKGAVPGPKKGFVVIKECAKKIPSKEAVKLVDLEIV 224
>I12R1_HUMAN (P42701) Interleukin-12 receptor beta-1 chain precursor| (IL-12R-beta1) (Interleukin-12 receptor beta) (IL-12 receptor beta component) (IL-12RB1) (CD212 antigen) Length = 662 Score = 28.1 bits (61), Expect = 5.2 Identities = 13/28 (46%), Positives = 15/28 (53%) Frame = -1 Query: 392 QGMLCRAKEACGDPPPVPAEADLSSRTG 309 QG CR E C PP P +AD S +G Sbjct: 20 QGAACRTSECCFQDPPYP-DADSGSASG 46
>CI005_HUMAN (Q9H330) Protein C9orf5 (Protein CG-2)| Length = 911 Score = 28.1 bits (61), Expect = 5.2 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = -1 Query: 227 LWQAQGLSCCAISVVSFCQNEHVIPCYF 144 LW QGL C AI ++ F H++P YF Sbjct: 766 LWLTQGLGCKAILLLIF----HLLPTYF 789
>VIT2_PERAM (Q9BPS0) Vitellogenin 2 precursor (Vg-2)| Length = 1876 Score = 28.1 bits (61), Expect = 5.2 Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 5/80 (6%) Frame = -2 Query: 373 PKKRVVTLRQSL-LKQTSRLALEEIKLKFVDTSSK----FGHGRFQTTDEKQRFYGKLKX 209 P+ V+ R++L TS++ E + F DT K + G+F+ TDE+++F + Sbjct: 1322 PQVPVIDYRKALEFDPTSKIQCE---VHFGDTPEKKSKVYFQGKFERTDERKKFVAE--- 1375 Query: 208 XXXAQYQLCHFVKTNM*YLV 149 QLC + N YL+ Sbjct: 1376 --SDMAQLCSAQQNNKNYLL 1393
>RUVB_ENTFA (Q839T5) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 338 Score = 28.1 bits (61), Expect = 5.2 Identities = 19/86 (22%), Positives = 40/86 (46%), Gaps = 5/86 (5%) Frame = +2 Query: 155 VSHVRF---DKMTQLILRSSSSLELAI--KPLLLVGGLETAVPKLGRGVDKLELDFLQCE 319 +SH+ + + +++LRS+ + I + + P++ + K DF Q + Sbjct: 178 ISHMEYYQEQDLKEIVLRSADIFQTEIFEEGAFEIARRSRGTPRIANRLLKRVRDFAQVQ 237 Query: 320 TRGLLQQGLAEGHHTLLWPDTASLDH 397 + G + + +A+ TLL D LD+ Sbjct: 238 SDGKIDRAIADKALTLLQVDHQGLDY 263
>LHR_ECOLI (P30015) Probable ATP-dependent helicase lhr (EC 3.6.1.-) (Large| helicase-related protein) Length = 1538 Score = 27.7 bits (60), Expect = 6.8 Identities = 11/23 (47%), Positives = 12/23 (52%) Frame = +2 Query: 305 FLQCETRGLLQQGLAEGHHTLLW 373 F +C R LL G GH T LW Sbjct: 780 FRECAARALLMPGRTPGHRTPLW 802
>GLGC_DEIRA (Q9RTR7) Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27)| (ADP-glucose synthase) (ADP-glucose pyrophosphorylase) (ADPGlc PPase) Length = 413 Score = 27.7 bits (60), Expect = 6.8 Identities = 12/32 (37%), Positives = 18/32 (56%) Frame = -1 Query: 398 DDQGMLCRAKEACGDPPPVPAEADLSSRTGGN 303 D++ + E DPP +P +ADLS + GN Sbjct: 172 DERWRVTEFHEKVPDPPTIPGQADLSLTSMGN 203
>GLGC_BRAJA (Q89G87) Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27)| (ADP-glucose synthase) (ADP-glucose pyrophosphorylase) (ADPGlc PPase) Length = 420 Score = 27.3 bits (59), Expect = 8.9 Identities = 15/50 (30%), Positives = 22/50 (44%) Frame = -1 Query: 398 DDQGMLCRAKEACGDPPPVPAEADLSSRTGGNQAQVCRHLFQVWARPFPD 249 D+ G + E DPPP+P + D+S + G + LF R D Sbjct: 177 DENGWIQEFLEKPADPPPMPGKPDVSLASMGIYVFDAKFLFDQLKRDAED 226
>CCD93_CHICK (Q5ZKI4) Coiled-coil domain-containing protein 93| Length = 617 Score = 27.3 bits (59), Expect = 8.9 Identities = 16/52 (30%), Positives = 31/52 (59%) Frame = -2 Query: 370 KKRVVTLRQSLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKL 215 +++V +L + +L++T LEE++ KFVD +K + +T E + + KL Sbjct: 317 RRKVASLNKQILQKTK--LLEELQAKFVDLQAKCTEAK-KTLTEVESYSEKL 365
>S14L4_HUMAN (Q9UDX3) SEC14-like protein 4 (Tocopherol-associated protein 3)| Length = 406 Score = 27.3 bits (59), Expect = 8.9 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 3/45 (6%) Frame = +3 Query: 267 PNLEEVSTNL--SLISSSARREVCFSRD-WRRVTTRFFGPTQHPL 392 P L V+ NL S +S RR++ D W++ T+F P Q P+ Sbjct: 195 PKLFPVAFNLVKSFMSEETRRKIVILGDNWKQELTKFISPDQLPV 239
>VNS1_EHDV2 (P27585) Nonstructural protein NS1 (Hydrophobic tubular protein)| Length = 552 Score = 27.3 bits (59), Expect = 8.9 Identities = 11/18 (61%), Positives = 12/18 (66%) Frame = +1 Query: 241 RRWSGNGRAQTWKRCRQT 294 RRW GNGR QT + R T Sbjct: 279 RRWEGNGRPQTLVQMRHT 296 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,456,079 Number of Sequences: 219361 Number of extensions: 1162536 Number of successful extensions: 3051 Number of sequences better than 10.0: 49 Number of HSP's better than 10.0 without gapping: 2967 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3050 length of database: 80,573,946 effective HSP length: 111 effective length of database: 56,224,875 effective search space used: 1349397000 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
