ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart06h11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_467091.1| Oryza sativa (japonica cultivar-group), mRNA 66 1e-07
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 66 1e-07
3dbj|AP002485.2| Oryza sativa (japonica cultivar-group) genomic D... 66 1e-07
4dbj|AK062922.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 1e-07
5emb|AJ307662.1|OSA307662 Oryza sativa genomic DNA fragment, chro... 66 1e-07
6ref|NM_190776.1| Oryza sativa (japonica cultivar-group), predic... 44 0.37
7gb|AC127300.3| Mus musculus BAC clone RP23-264J18 from chromosom... 44 0.37
8gb|AF224315.1| Gallus gallus Frizzled-2 (cFz-2) mRNA, partial cds 44 0.37
9gb|AY283065.1| Gallus gallus frizzled-2 (FZ2) mRNA, complete cds 44 0.37
10dbj|AK086041.1| Mus musculus 16 days neonate heart cDNA, RIKEN f... 44 0.37
11dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.37
12ref|NM_204222.1| Gallus gallus frizzled homolog 2 (Drosophila) (... 44 0.37
13dbj|AP003286.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.37
14dbj|AK099470.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.37
15dbj|AK099469.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.37
16dbj|AK062271.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.37
17gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, co... 44 0.37
18gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 42 1.5
19gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 42 1.5
20emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 42 1.5
21gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome 42 1.5
22gb|AY938407.1| Uncultured eukaryote clone ENI47296.00339 18S rib... 42 1.5
23gb|AY938380.1| Uncultured eukaryote clone ENI47296.00298 18S rib... 42 1.5
24gb|AY938362.1| Uncultured eukaryote clone ENI47296.00256 18S rib... 42 1.5
25gb|AY938336.1| Uncultured eukaryote clone ENI47296.00208 18S rib... 42 1.5
26gb|AY938304.1| Uncultured eukaryote clone ENI47296.00151 18S rib... 42 1.5
27gb|AY938212.1| Uncultured eukaryote clone ENI42482.00364 18S rib... 42 1.5
28gb|AY938060.1| Uncultured eukaryote clone ENI42482.00172 18S rib... 42 1.5
29gb|AY937894.1| Uncultured eukaryote clone ENI40076.00794 18S rib... 42 1.5
30gb|AY937836.1| Uncultured eukaryote clone ENI40076.00722 18S rib... 42 1.5
31gb|AY937612.1| Uncultured eukaryote clone ENI40076.00315 18S rib... 42 1.5
32gb|AY937581.1| Uncultured eukaryote clone ENI40076.00252 18S rib... 42 1.5
33dbj|AP004975.1| Lotus japonicus genomic DNA, chromosome 5, clone... 42 1.5
34gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome 42 1.5
35emb|AL772385.8| Mouse DNA sequence from clone RP23-340E12 on chr... 42 1.5
36gb|CP000148.1| Geobacter metallireducens GS-15, complete genome 40 5.8
37ref|XM_511282.1| PREDICTED: Pan troglodytes similar to hypotheti... 40 5.8
38gb|AY596296.1| Haloarcula marismortui ATCC 43049 plasmid pNG700,... 40 5.8
39gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl... 40 5.8
40gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 40 5.8
41gb|AE009333.1| Agrobacterium tumefaciens str. C58 linear chromos... 40 5.8
42gb|AE008281.1| Agrobacterium tumefaciens str. C58 linear chromos... 40 5.8
43gb|AY386265.1| Bovine papular stomatitis virus strain BV-AR02, c... 40 5.8
44gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, compl... 40 5.8
45emb|BX640449.1| Bordetella bronchiseptica strain RB50, complete ... 40 5.8
46emb|BX640434.1| Bordetella parapertussis strain 12822, complete ... 40 5.8
47emb|BX640420.1| Bordetella pertussis strain Tohama I, complete g... 40 5.8
48emb|AJ276414.1|AAN276414 Artemisia annua partial gASC23 gene for... 40 5.8
49dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete g... 40 5.8
50dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 5.8
51dbj|AK110014.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.8
52gb|AF117827.1|AF117827 Methylococcus capsulatus putative nonahem... 40 5.8
53gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 5.8
54emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome 40 5.8
55gb|AE017221.1| Thermus thermophilus HB27, complete genome 40 5.8 
>ref|XM_467091.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 404

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 60/67 (89%), Gaps = 4/67 (5%)
 Strand = Plus / Minus

                                                                       
Query: 122 ggacggacaaccaatgcatcatcgtacatcaagaatcgatcgatcg-tagtaccaccggt 180
           |||| |||||||||||||||   ||||||||||||||||||||||| |  ||||||||||
Sbjct: 226 ggactgacaaccaatgcatc---gtacatcaagaatcgatcgatcgatcataccaccggt 170

                  
Query: 181 aaaaatt 187
           |||||||
Sbjct: 169 aaaaatt 163
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 60/67 (89%), Gaps = 4/67 (5%)
 Strand = Plus / Minus

                                                                            
Query: 122      ggacggacaaccaatgcatcatcgtacatcaagaatcgatcgatcg-tagtaccaccggt 180
                |||| |||||||||||||||   ||||||||||||||||||||||| |  ||||||||||
Sbjct: 26356294 ggactgacaaccaatgcatc---gtacatcaagaatcgatcgatcgatcataccaccggt 26356238

                       
Query: 181      aaaaatt 187
                |||||||
Sbjct: 26356237 aaaaatt 26356231



 Score = 48.1 bits (24), Expect = 0.024
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                            
Query: 285      gcgctcgccaaggccaccagcgccgcgacgcccgccgcgcgcgc 328
                |||| |||||| ||||| ||||| |||||||| |||||||||||
Sbjct: 26356065 gcgcccgccaatgccacgagcgcggcgacgccggccgcgcgcgc 26356022
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>dbj|AP002485.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:P0491E01
          Length = 136150

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 60/67 (89%), Gaps = 4/67 (5%)
 Strand = Plus / Minus

                                                                         
Query: 122   ggacggacaaccaatgcatcatcgtacatcaagaatcgatcgatcg-tagtaccaccggt 180
             |||| |||||||||||||||   ||||||||||||||||||||||| |  ||||||||||
Sbjct: 88646 ggactgacaaccaatgcatc---gtacatcaagaatcgatcgatcgatcataccaccggt 88590

                    
Query: 181   aaaaatt 187
             |||||||
Sbjct: 88589 aaaaatt 88583



 Score = 48.1 bits (24), Expect = 0.024
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                         
Query: 285   gcgctcgccaaggccaccagcgccgcgacgcccgccgcgcgcgc 328
             |||| |||||| ||||| ||||| |||||||| |||||||||||
Sbjct: 88417 gcgcccgccaatgccacgagcgcggcgacgccggccgcgcgcgc 88374
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>dbj|AK062922.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-108-H08, full
           insert sequence
          Length = 404

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 60/67 (89%), Gaps = 4/67 (5%)
 Strand = Plus / Minus

                                                                       
Query: 122 ggacggacaaccaatgcatcatcgtacatcaagaatcgatcgatcg-tagtaccaccggt 180
           |||| |||||||||||||||   ||||||||||||||||||||||| |  ||||||||||
Sbjct: 226 ggactgacaaccaatgcatc---gtacatcaagaatcgatcgatcgatcataccaccggt 170

                  
Query: 181 aaaaatt 187
           |||||||
Sbjct: 169 aaaaatt 163
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>emb|AJ307662.1|OSA307662 Oryza sativa genomic DNA fragment, chromosome 2
          Length = 339972

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 60/67 (89%), Gaps = 4/67 (5%)
 Strand = Plus / Minus

                                                                         
Query: 122   ggacggacaaccaatgcatcatcgtacatcaagaatcgatcgatcg-tagtaccaccggt 180
             |||| |||||||||||||||   ||||||||||||||||||||||| |  ||||||||||
Sbjct: 79437 ggactgacaaccaatgcatc---gtacatcaagaatcgatcgatcgatcataccaccggt 79381

                    
Query: 181   aaaaatt 187
             |||||||
Sbjct: 79380 aaaaatt 79374



 Score = 48.1 bits (24), Expect = 0.024
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                         
Query: 285   gcgctcgccaaggccaccagcgccgcgacgcccgccgcgcgcgc 328
             |||| |||||| ||||| ||||| |||||||| |||||||||||
Sbjct: 79209 gcgcccgccaatgccacgagcgcggcgacgccggccgcgcgcgc 79166
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>ref|NM_190776.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2283

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 302  cagcgccgcgacgcccgccgcg 323
            ||||||||||||||||||||||
Sbjct: 1626 cagcgccgcgacgcccgccgcg 1605
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>gb|AC127300.3| Mus musculus BAC clone RP23-264J18 from chromosome 8, complete sequence
          Length = 178649

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 200    gaaagaagaaaaaagcagcagc 221
              ||||||||||||||||||||||
Sbjct: 126134 gaaagaagaaaaaagcagcagc 126113
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>gb|AF224315.1| Gallus gallus Frizzled-2 (cFz-2) mRNA, partial cds
          Length = 2918

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 299 caccagcgccgcgacgcccgccgcgc 324
           ||||||||||||| ||||||||||||
Sbjct: 401 caccagcgccgcgccgcccgccgcgc 426
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>gb|AY283065.1| Gallus gallus frizzled-2 (FZ2) mRNA, complete cds
          Length = 2040

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 299 caccagcgccgcgacgcccgccgcgc 324
           ||||||||||||| ||||||||||||
Sbjct: 687 caccagcgccgcgccgcccgccgcgc 712
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>dbj|AK086041.1| Mus musculus 16 days neonate heart cDNA, RIKEN full-length enriched
            library, clone:D830048B13 product:hypothetical protein,
            full insert sequence
          Length = 3256

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 200  gaaagaagaaaaaagcagcagc 221
            ||||||||||||||||||||||
Sbjct: 1597 gaaagaagaaaaaagcagcagc 1576
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 302      cagcgccgcgacgcccgccgcg 323
                ||||||||||||||||||||||
Sbjct: 37646768 cagcgccgcgacgcccgccgcg 37646747
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>ref|NM_204222.1| Gallus gallus frizzled homolog 2 (Drosophila) (FZD2), mRNA
          Length = 2040

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 299 caccagcgccgcgacgcccgccgcgc 324
           ||||||||||||| ||||||||||||
Sbjct: 687 caccagcgccgcgccgcccgccgcgc 712
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>dbj|AP003286.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0677H08
          Length = 178830

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 302    cagcgccgcgacgcccgccgcg 323
              ||||||||||||||||||||||
Sbjct: 107242 cagcgccgcgacgcccgccgcg 107221
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>dbj|AK099470.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013023O14, full
            insert sequence
          Length = 2549

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 302  cagcgccgcgacgcccgccgcg 323
            ||||||||||||||||||||||
Sbjct: 1677 cagcgccgcgacgcccgccgcg 1656
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>dbj|AK099469.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013023O13, full
            insert sequence
          Length = 2549

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 302  cagcgccgcgacgcccgccgcg 323
            ||||||||||||||||||||||
Sbjct: 1677 cagcgccgcgacgcccgccgcg 1656
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>dbj|AK062271.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-100-A07, full
           insert sequence
          Length = 1704

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 302 cagcgccgcgacgcccgccgcg 323
           ||||||||||||||||||||||
Sbjct: 928 cagcgccgcgacgcccgccgcg 907
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>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 303     agcgccgcgacgcccgccgcgc 324
               ||||||||||||||||||||||
Sbjct: 1945834 agcgccgcgacgcccgccgcgc 1945855



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 306     gccgcgacgcccgccgcgcgcgct 329
               |||||| |||||||||||||||||
Sbjct: 2025803 gccgcgccgcccgccgcgcgcgct 2025826
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>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 303     agcgccgcgacgcccgccgcgcgcg 327
               |||||||| ||||||||||||||||
Sbjct: 3140956 agcgccgctacgcccgccgcgcgcg 3140932
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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 303     agcgccgcgacgcccgccgcgcgcg 327
               |||||||| ||||||||||||||||
Sbjct: 1660181 agcgccgctacgcccgccgcgcgcg 1660205
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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 303     agcgccgcgacgcccgccgcgcgcg 327
               |||||||| ||||||||||||||||
Sbjct: 1547142 agcgccgctacgcccgccgcgcgcg 1547166



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 308    cgcgacgcccgccgcgcgcg 327
              ||||||||||||||||||||
Sbjct: 831954 cgcgacgcccgccgcgcgcg 831973
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>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome
          Length = 3304561

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 298     ccaccagcgccgcgacgcccg 318
               |||||||||||||||||||||
Sbjct: 1931719 ccaccagcgccgcgacgcccg 1931739



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 299    caccagcgccgcgacgcccg 318
              ||||||||||||||||||||
Sbjct: 424004 caccagcgccgcgacgcccg 423985
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>gb|AY938407.1| Uncultured eukaryote clone ENI47296.00339 18S ribosomal RNA gene,
          partial sequence
          Length = 576

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                               
Query: 79 aaaccaaccactacccgccga 99
          |||||||||||||||||||||
Sbjct: 49 aaaccaaccactacccgccga 29
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>gb|AY938380.1| Uncultured eukaryote clone ENI47296.00298 18S ribosomal RNA gene,
          partial sequence
          Length = 235

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                               
Query: 79 aaaccaaccactacccgccga 99
          |||||||||||||||||||||
Sbjct: 43 aaaccaaccactacccgccga 23
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>gb|AY938362.1| Uncultured eukaryote clone ENI47296.00256 18S ribosomal RNA gene,
          partial sequence
          Length = 589

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                               
Query: 79 aaaccaaccactacccgccga 99
          |||||||||||||||||||||
Sbjct: 49 aaaccaaccactacccgccga 29
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>gb|AY938336.1| Uncultured eukaryote clone ENI47296.00208 18S ribosomal RNA gene,
          partial sequence
          Length = 570

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                               
Query: 79 aaaccaaccactacccgccga 99
          |||||||||||||||||||||
Sbjct: 46 aaaccaaccactacccgccga 26
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>gb|AY938304.1| Uncultured eukaryote clone ENI47296.00151 18S ribosomal RNA gene,
          partial sequence
          Length = 589

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                               
Query: 79 aaaccaaccactacccgccga 99
          |||||||||||||||||||||
Sbjct: 49 aaaccaaccactacccgccga 29
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>gb|AY938212.1| Uncultured eukaryote clone ENI42482.00364 18S ribosomal RNA gene,
          partial sequence
          Length = 573

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                               
Query: 79 aaaccaaccactacccgccga 99
          |||||||||||||||||||||
Sbjct: 49 aaaccaaccactacccgccga 29
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>gb|AY938060.1| Uncultured eukaryote clone ENI42482.00172 18S ribosomal RNA gene,
          partial sequence
          Length = 545

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                               
Query: 79 aaaccaaccactacccgccga 99
          |||||||||||||||||||||
Sbjct: 49 aaaccaaccactacccgccga 29
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>gb|AY937894.1| Uncultured eukaryote clone ENI40076.00794 18S ribosomal RNA gene,
          partial sequence
          Length = 607

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                               
Query: 79 aaaccaaccactacccgccga 99
          |||||||||||||||||||||
Sbjct: 49 aaaccaaccactacccgccga 29
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>gb|AY937836.1| Uncultured eukaryote clone ENI40076.00722 18S ribosomal RNA gene,
          partial sequence
          Length = 605

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                               
Query: 79 aaaccaaccactacccgccga 99
          |||||||||||||||||||||
Sbjct: 45 aaaccaaccactacccgccga 25
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>gb|AY937612.1| Uncultured eukaryote clone ENI40076.00315 18S ribosomal RNA gene,
          partial sequence
          Length = 568

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                               
Query: 79 aaaccaaccactacccgccga 99
          |||||||||||||||||||||
Sbjct: 47 aaaccaaccactacccgccga 27
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>gb|AY937581.1| Uncultured eukaryote clone ENI40076.00252 18S ribosomal RNA gene,
          partial sequence
          Length = 491

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                               
Query: 79 aaaccaaccactacccgccga 99
          |||||||||||||||||||||
Sbjct: 44 aaaccaaccactacccgccga 24
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>dbj|AP004975.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT21J12, TM0158,
             complete sequence
          Length = 83377

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 66    cagaacatgcactaaaccaac 86
             |||||||||||||||||||||
Sbjct: 13126 cagaacatgcactaaaccaac 13146
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>gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome
          Length = 2256640

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 303    agcgccgcgacgcccgccgcg 323
              |||||||||||||||||||||
Sbjct: 851400 agcgccgcgacgcccgccgcg 851420
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>emb|AL772385.8| Mouse DNA sequence from clone RP23-340E12 on chromosome 4, complete
              sequence
          Length = 220248

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 200    gaaagaagaaaaaagcagcag 220
              |||||||||||||||||||||
Sbjct: 115552 gaaagaagaaaaaagcagcag 115532
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>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome
          Length = 3997420

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 290     cgccaaggccaccagcgccg 309
               ||||||||||||||||||||
Sbjct: 3180066 cgccaaggccaccagcgccg 3180085
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>ref|XM_511282.1| PREDICTED: Pan troglodytes similar to hypothetical protein MGC29671
            (LOC454445), mRNA
          Length = 1965

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 234  ggaggacacagcatgcactggcct 257
            ||||||| ||||||||||||||||
Sbjct: 1087 ggaggacccagcatgcactggcct 1110
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>gb|AY596296.1| Haloarcula marismortui ATCC 43049 plasmid pNG700, complete sequence
          Length = 410554

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 305    cgccgcgacgcccgccgcgc 324
              ||||||||||||||||||||
Sbjct: 336418 cgccgcgacgcccgccgcgc 336437
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>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 307     ccgcgacgcccgccgcgcgc 326
               ||||||||||||||||||||
Sbjct: 1858823 ccgcgacgcccgccgcgcgc 1858842
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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 304    gcgccgcgacgcccgccgcg 323
              ||||||||||||||||||||
Sbjct: 282059 gcgccgcgacgcccgccgcg 282078
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>gb|AE009333.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 103 of
             187 of the complete sequence
          Length = 13898

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 335   tgcgctgctgctgtcggtca 354
             ||||||||||||||||||||
Sbjct: 10910 tgcgctgctgctgtcggtca 10891
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>gb|AE008281.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 85 of
            187 of the complete sequence
          Length = 13620

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 335  tgcgctgctgctgtcggtca 354
            ||||||||||||||||||||
Sbjct: 4306 tgcgctgctgctgtcggtca 4325
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>gb|AY386265.1| Bovine papular stomatitis virus strain BV-AR02, complete genome
          Length = 134431

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 298   ccaccagcgccgcgacgcccgccg 321
             ||||||||||||||||| ||||||
Sbjct: 29426 ccaccagcgccgcgacggccgccg 29403
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>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 308     cgcgacgcccgccgcgcgcgctgt 331
               |||||||||||||||||| |||||
Sbjct: 2386254 cgcgacgcccgccgcgcgggctgt 2386277
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>emb|BX640449.1| Bordetella bronchiseptica strain RB50, complete genome; segment 13/16
          Length = 348074

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 296    ggccaccagcgccgcgacgc 315
              ||||||||||||||||||||
Sbjct: 123689 ggccaccagcgccgcgacgc 123708
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>emb|BX640434.1| Bordetella parapertussis strain 12822, complete genome; segment 12/14
          Length = 344805

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 296   ggccaccagcgccgcgacgc 315
             ||||||||||||||||||||
Sbjct: 76311 ggccaccagcgccgcgacgc 76330
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>emb|BX640420.1| Bordetella pertussis strain Tohama I, complete genome; segment 10/12
          Length = 348134

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 296    ggccaccagcgccgcgacgc 315
              ||||||||||||||||||||
Sbjct: 342460 ggccaccagcgccgcgacgc 342479
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>emb|AJ276414.1|AAN276414 Artemisia annua partial gASC23 gene for putative sesquiterpene
           cyclase, exons 1-3
          Length = 788

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 71  catgcactaaaccaaccact 90
           ||||||||||||||||||||
Sbjct: 380 catgcactaaaccaaccact 399
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>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome
          Length = 1849742

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 267    aggaagacggcgaggcccgc 286
              ||||||||||||||||||||
Sbjct: 265171 aggaagacggcgaggcccgc 265152
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 301     ccagcgccgcgacgcccgcc 320
               ||||||||||||||||||||
Sbjct: 4368802 ccagcgccgcgacgcccgcc 4368783
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>dbj|AK110014.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-159-H01, full
            insert sequence
          Length = 3100

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 298  ccaccagcgccgcgacgccc 317
            ||||||||||||||||||||
Sbjct: 2984 ccaccagcgccgcgacgccc 2965
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>gb|AF117827.1|AF117827 Methylococcus capsulatus putative nonaheme c-cytochrome, cytochrome
            c553o (occ), and putative septaheme c-cytochrome genes,
            complete cds; and unknown gene
          Length = 11002

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 299  caccagcgccgcgacgcccg 318
            ||||||||||||||||||||
Sbjct: 3984 caccagcgccgcgacgcccg 3965
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 307     ccgcgacgcccgccgcgcgc 326
               ||||||||||||||||||||
Sbjct: 3435871 ccgcgacgcccgccgcgcgc 3435852
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>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome
          Length = 2595221

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 269    gaagacggcgaggcccgcgc 288
              ||||||||||||||||||||
Sbjct: 891559 gaagacggcgaggcccgcgc 891540
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>gb|AE017221.1| Thermus thermophilus HB27, complete genome
          Length = 1894877

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 267     aggaagacggcgaggcccgc 286
               ||||||||||||||||||||
Sbjct: 1625941 aggaagacggcgaggcccgc 1625960


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,417,173
Number of Sequences: 3902068
Number of extensions: 4417173
Number of successful extensions: 90250
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 87943
Number of HSP's gapped (non-prelim): 2297
length of query: 434
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 412
effective length of database: 17,147,199,772
effective search space: 7064646306064
effective search space used: 7064646306064
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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