ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart06h10 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_476744.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1298 Score = 101 bits (51), Expect = 2e-18 Identities = 201/251 (80%) Strand = Plus / Minus Query: 163 ttgaacgccttctccacgctctccctccgcgcgccgacggtcttgtacacgcgcatgaac 222 ||||| |||||||| ||||| || | |||||||||||||||||||| | |||||||||| Sbjct: 1076 ttgaaggccttctcgacgctgtcgcggcgcgcgccgacggtcttgtagatgcgcatgaac 1017 Query: 223 tcgtcgaaagtgacagtgcggtagcgcggcgggttgccctcgcagacaagctcctccgcg 282 ||| ||| ||||| ||||| || ||||| || ||| || | ||| ||||||| ||| Sbjct: 1016 tcgcggaacgtgacggtgcgatactgcggctggccgccgtctccgacgagctccttcgcc 957 Query: 283 gggccgatggggatgtccgcggccggcatgataaaggtcgccaccgaggttcgtgccagc 342 || |||| | || |||| | |||||| || || ||||||||||| || | |||| | Sbjct: 956 ggtccgacgaggcagtccatcggcggcatcatgaacgtcgccaccgacgtcctcgccacc 897 Query: 343 gccgcgttggtcatcgcccggtgctcgatgctcttcaaaaacccgttggtcgcaatctcg 402 |||| ||| |||||||||| ||||||||||||||||| | ||||| |||||||||||| Sbjct: 896 gccgagttcgtcatcgccctgtgctcgatgctcttcagcactccgttcgtcgcaatctcg 837 Query: 403 agcaggtggcc 413 || |||||||| Sbjct: 836 aggaggtggcc 826
>dbj|AK121818.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033099A15, full insert sequence Length = 1301 Score = 101 bits (51), Expect = 2e-18 Identities = 201/251 (80%) Strand = Plus / Minus Query: 163 ttgaacgccttctccacgctctccctccgcgcgccgacggtcttgtacacgcgcatgaac 222 ||||| |||||||| ||||| || | |||||||||||||||||||| | |||||||||| Sbjct: 1079 ttgaaggccttctcgacgctgtcgcggcgcgcgccgacggtcttgtagatgcgcatgaac 1020 Query: 223 tcgtcgaaagtgacagtgcggtagcgcggcgggttgccctcgcagacaagctcctccgcg 282 ||| ||| ||||| ||||| || ||||| || ||| || | ||| ||||||| ||| Sbjct: 1019 tcgcggaacgtgacggtgcgatactgcggctggccgccgtctccgacgagctccttcgcc 960 Query: 283 gggccgatggggatgtccgcggccggcatgataaaggtcgccaccgaggttcgtgccagc 342 || |||| | || |||| | |||||| || || ||||||||||| || | |||| | Sbjct: 959 ggtccgacgaggcagtccatcggcggcatcatgaacgtcgccaccgacgtcctcgccacc 900 Query: 343 gccgcgttggtcatcgcccggtgctcgatgctcttcaaaaacccgttggtcgcaatctcg 402 |||| ||| |||||||||| ||||||||||||||||| | ||||| |||||||||||| Sbjct: 899 gccgagttcgtcatcgccctgtgctcgatgctcttcagcactccgttcgtcgcaatctcg 840 Query: 403 agcaggtggcc 413 || |||||||| Sbjct: 839 aggaggtggcc 829
>dbj|AK060318.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-007-F03, full insert sequence Length = 1298 Score = 101 bits (51), Expect = 2e-18 Identities = 201/251 (80%) Strand = Plus / Minus Query: 163 ttgaacgccttctccacgctctccctccgcgcgccgacggtcttgtacacgcgcatgaac 222 ||||| |||||||| ||||| || | |||||||||||||||||||| | |||||||||| Sbjct: 1076 ttgaaggccttctcgacgctgtcgcggcgcgcgccgacggtcttgtagatgcgcatgaac 1017 Query: 223 tcgtcgaaagtgacagtgcggtagcgcggcgggttgccctcgcagacaagctcctccgcg 282 ||| ||| ||||| ||||| || ||||| || ||| || | ||| ||||||| ||| Sbjct: 1016 tcgcggaacgtgacggtgcgatactgcggctggccgccgtctccgacgagctccttcgcc 957 Query: 283 gggccgatggggatgtccgcggccggcatgataaaggtcgccaccgaggttcgtgccagc 342 || |||| | || |||| | |||||| || || ||||||||||| || | |||| | Sbjct: 956 ggtccgacgaggcagtccatcggcggcatcatgaacgtcgccaccgacgtcctcgccacc 897 Query: 343 gccgcgttggtcatcgcccggtgctcgatgctcttcaaaaacccgttggtcgcaatctcg 402 |||| ||| |||||||||| ||||||||||||||||| | ||||| |||||||||||| Sbjct: 896 gccgagttcgtcatcgccctgtgctcgatgctcttcagcactccgttcgtcgcaatctcg 837 Query: 403 agcaggtggcc 413 || |||||||| Sbjct: 836 aggaggtggcc 826
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 83.8 bits (42), Expect = 4e-13 Identities = 189/238 (79%) Strand = Plus / Minus Query: 163 ttgaacgccttctccacgctctccctccgcgcgccgacggtcttgtacacgcgcatgaac 222 ||||| |||||||| ||||| || | |||||||||||||||||||| | |||||||||| Sbjct: 3733467 ttgaaggccttctcgacgctgtcgcggcgcgcgccgacggtcttgtagatgcgcatgaac 3733408 Query: 223 tcgtcgaaagtgacagtgcggtagcgcggcgggttgccctcgcagacaagctcctccgcg 282 ||| ||| ||||| ||||| || ||||| || ||| || | ||| ||||||| ||| Sbjct: 3733407 tcgcggaacgtgacggtgcgatactgcggctggccgccgtctccgacgagctccttcgcc 3733348 Query: 283 gggccgatggggatgtccgcggccggcatgataaaggtcgccaccgaggttcgtgccagc 342 || |||| | || |||| | |||||| || || ||||||||||| || | |||| | Sbjct: 3733347 ggtccgacgaggcagtccatcggcggcatcatgaacgtcgccaccgacgtcctcgccacc 3733288 Query: 343 gccgcgttggtcatcgcccggtgctcgatgctcttcaaaaacccgttggtcgcaatct 400 |||| ||| |||||||||| ||||||||||||||||| | ||||| |||||||||| Sbjct: 3733287 gccgagttcgtcatcgccctgtgctcgatgctcttcagcactccgttcgtcgcaatct 3733230
>dbj|AP005840.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0050F10 Length = 151986 Score = 83.8 bits (42), Expect = 4e-13 Identities = 189/238 (79%) Strand = Plus / Minus Query: 163 ttgaacgccttctccacgctctccctccgcgcgccgacggtcttgtacacgcgcatgaac 222 ||||| |||||||| ||||| || | |||||||||||||||||||| | |||||||||| Sbjct: 77818 ttgaaggccttctcgacgctgtcgcggcgcgcgccgacggtcttgtagatgcgcatgaac 77759 Query: 223 tcgtcgaaagtgacagtgcggtagcgcggcgggttgccctcgcagacaagctcctccgcg 282 ||| ||| ||||| ||||| || ||||| || ||| || | ||| ||||||| ||| Sbjct: 77758 tcgcggaacgtgacggtgcgatactgcggctggccgccgtctccgacgagctccttcgcc 77699 Query: 283 gggccgatggggatgtccgcggccggcatgataaaggtcgccaccgaggttcgtgccagc 342 || |||| | || |||| | |||||| || || ||||||||||| || | |||| | Sbjct: 77698 ggtccgacgaggcagtccatcggcggcatcatgaacgtcgccaccgacgtcctcgccacc 77639 Query: 343 gccgcgttggtcatcgcccggtgctcgatgctcttcaaaaacccgttggtcgcaatct 400 |||| ||| |||||||||| ||||||||||||||||| | ||||| |||||||||| Sbjct: 77638 gccgagttcgtcatcgccctgtgctcgatgctcttcagcactccgttcgtcgcaatct 77581
>dbj|AB024058.1| Hordeum vulgare Ids3 mRNA, complete cds Length = 1241 Score = 69.9 bits (35), Expect = 6e-09 Identities = 92/111 (82%) Strand = Plus / Minus Query: 307 ggcatgataaaggtcgccaccgaggttcgtgccagcgccgcgttggtcatcgcccggtgc 366 |||||||||||||| |||||||| || ||||| ||||| | ||| ||||| || |||||| Sbjct: 864 ggcatgataaaggtagccaccgatgtgcgtgcaagcgctgagtttgtcattgcacggtgc 805 Query: 367 tcgatgctcttcaaaaacccgttggtcgcaatctcgagcaggtggccgaag 417 || |||||||| || ||||| || ||| ||| |||||| | ||||||||| Sbjct: 804 tctatgctctttaacaacccatttgtcacaacctcgagttgttggccgaag 754
>dbj|D37796.1|BLYIDS3NK Barley gene for Ids3, complete cds Length = 3043 Score = 63.9 bits (32), Expect = 4e-07 Identities = 68/80 (85%) Strand = Plus / Minus Query: 307 ggcatgataaaggtcgccaccgaggttcgtgccagcgccgcgttggtcatcgcccggtgc 366 |||||||||||||| |||||||| || ||||| ||||| | ||| ||||| || |||||| Sbjct: 2656 ggcatgataaaggtagccaccgatgtgcgtgcaagcgctgagtttgtcattgcacggtgc 2597 Query: 367 tcgatgctcttcaaaaaccc 386 || |||||||| || ||||| Sbjct: 2596 tctatgctctttaacaaccc 2577
>gb|AY104706.1| Zea mays PCO076122 mRNA sequence Length = 1382 Score = 60.0 bits (30), Expect = 6e-06 Identities = 39/42 (92%) Strand = Plus / Minus Query: 348 gttggtcatcgcccggtgctcgatgctcttcaaaaacccgtt 389 |||||||||| |||||||||||||||||||||| | |||||| Sbjct: 929 gttggtcatcacccggtgctcgatgctcttcaagatcccgtt 888
>dbj|D10057.1|BLYIDS2 Hordeum vulgare ids-2 mRNA, complete cds Length = 1235 Score = 56.0 bits (28), Expect = 9e-05 Identities = 46/52 (88%) Strand = Plus / Minus Query: 238 gtgcggtagcgcggcgggttgccctcgcagacaagctcctccgcggggccga 289 ||||||||||| ||||||||| |||||| ||| | ||||||||| ||||||| Sbjct: 927 gtgcggtagcgtggcgggttgtcctcgctgacgaactcctccgcagggccga 876
>dbj|D15051.1|BLYIDS2NK Hordeum vulgare gene for ids2, complete cds Length = 3411 Score = 56.0 bits (28), Expect = 9e-05 Identities = 46/52 (88%) Strand = Plus / Minus Query: 238 gtgcggtagcgcggcgggttgccctcgcagacaagctcctccgcggggccga 289 ||||||||||| ||||||||| |||||| ||| | ||||||||| ||||||| Sbjct: 2976 gtgcggtagcgtggcgggttgtcctcgctgacgaactcctccgcagggccga 2925
>gb|AE014075.1| Escherichia coli CFT073, complete genome Length = 5231428 Score = 46.1 bits (23), Expect = 0.091 Identities = 23/23 (100%) Strand = Plus / Minus Query: 21 aaaataaaaatatacttttttat 43 ||||||||||||||||||||||| Sbjct: 3523522 aaaataaaaatatacttttttat 3523500
>gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome Length = 4607203 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 338 ccagcgccgcgttggtcatcgc 359 |||||||||||||||||||||| Sbjct: 2675771 ccagcgccgcgttggtcatcgc 2675792
>gb|AC117600.9| Mus musculus chromosome 1, clone RP23-449C20, complete sequence Length = 195848 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Minus Query: 17 tgagaaaataaaaatatactttttta 42 |||||||||||| ||||||||||||| Sbjct: 73222 tgagaaaataaatatatactttttta 73197
>gb|U00096.2| Escherichia coli K-12 MG1655, complete genome Length = 4639675 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 338 ccagcgccgcgttggtcatcgc 359 |||||||||||||||||||||| Sbjct: 2688922 ccagcgccgcgttggtcatcgc 2688943
>dbj|AP009048.1| Escherichia coli W3110 DNA, complete genome Length = 4646332 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 338 ccagcgccgcgttggtcatcgc 359 |||||||||||||||||||||| Sbjct: 2689556 ccagcgccgcgttggtcatcgc 2689577
>emb|BX323587.5| Zebrafish DNA sequence from clone CH211-100L3, complete sequence Length = 90800 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 20 gaaaataaaaatatactttttt 41 |||||||||||||||||||||| Sbjct: 70779 gaaaataaaaatatactttttt 70800
>gb|AC012101.7| Homo sapiens chromosome 18, clone RP11-396D4, complete sequence Length = 168965 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 21 aaaataaaaatatactttttta 42 |||||||||||||||||||||| Sbjct: 168002 aaaataaaaatatactttttta 167981
>gb|AF455359.1| Spiroplasma citri GII3 cell shape-determining gene cluster, complete sequence Length = 6942 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 25 taaaaatatacttttttatgaa 46 |||||||||||||||||||||| Sbjct: 2140 taaaaatatacttttttatgaa 2119
>gb|AC090812.5| Homo sapiens chromosome 18, clone RP11-59J7, complete sequence Length = 176873 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 21 aaaataaaaatatactttttta 42 |||||||||||||||||||||| Sbjct: 126792 aaaataaaaatatactttttta 126813
>gb|AC022723.9| Homo sapiens chromosome 18, clone RP11-237L16, complete sequence Length = 121014 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 21 aaaataaaaatatactttttta 42 |||||||||||||||||||||| Sbjct: 61070 aaaataaaaatatactttttta 61049
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Plus Query: 19 agaaaataaaaatatacttttttatg 44 |||||||||||||| ||||||||||| Sbjct: 29514108 agaaaataaaaatacacttttttatg 29514133
>gb|DQ023304.1| Aegilops tauschii beta1 proteasome-7D gene, complete cds Length = 6037 Score = 44.1 bits (22), Expect = 0.36 Identities = 40/46 (86%) Strand = Plus / Minus Query: 1 ctactttaaattgcattgagaaaataaaaatatacttttttatgaa 46 |||||||||| |||||||| || ||| || || ||||||||||||| Sbjct: 5610 ctactttaaagtgcattgaaaagatagaactacacttttttatgaa 5565
>gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome Length = 4599354 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 338 ccagcgccgcgttggtcatcgc 359 |||||||||||||||||||||| Sbjct: 2669358 ccagcgccgcgttggtcatcgc 2669379
>dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete genome Length = 3630528 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 25 taaaaatatacttttttatgaa 46 |||||||||||||||||||||| Sbjct: 1658876 taaaaatatacttttttatgaa 1658897
>emb|BX284688.13| Zebrafish DNA sequence from clone DKEY-71K16 in linkage group 25, complete sequence Length = 236784 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 20 gaaaataaaaatatactttttt 41 |||||||||||||||||||||| Sbjct: 226219 gaaaataaaaatatactttttt 226198
>gb|AF069757.1|AF069757 Dictyostelium discoideum spermidine synthase gene, complete cds Length = 3280 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 21 aaaataaaaatatactttttta 42 |||||||||||||||||||||| Sbjct: 755 aaaataaaaatatactttttta 776
>gb|CP000034.1| Shigella dysenteriae Sd197, complete genome Length = 4369232 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 338 ccagcgccgcgttggtcatcgc 359 |||||||||||||||||||||| Sbjct: 2544771 ccagcgccgcgttggtcatcgc 2544792
>gb|U36841.1|ECU36841 Escherichia coli K-12 genome, approximately 55 minutes Length = 15706 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 338 ccagcgccgcgttggtcatcgc 359 |||||||||||||||||||||| Sbjct: 2144 ccagcgccgcgttggtcatcgc 2165
>gb|AC144455.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0086G17, complete sequence Length = 134631 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Plus Query: 19 agaaaataaaaatatacttttttatg 44 |||||||||||||| ||||||||||| Sbjct: 98378 agaaaataaaaatacacttttttatg 98403
>gb|CP000036.1| Shigella boydii Sb227, complete genome Length = 4519823 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 338 ccagcgccgcgttggtcatcgc 359 |||||||||||||||||||||| Sbjct: 2587977 ccagcgccgcgttggtcatcgc 2587998
>gb|CP000038.1| Shigella sonnei Ss046, complete genome Length = 4825265 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 338 ccagcgccgcgttggtcatcgc 359 |||||||||||||||||||||| Sbjct: 2794874 ccagcgccgcgttggtcatcgc 2794895
>gb|AC148408.2| X. tropicalis BAC clone ISB1-15D4 containing sox17 alpha and beta genes, complete sequence Length = 97631 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 22 aaataaaaatatactttttta 42 ||||||||||||||||||||| Sbjct: 11368 aaataaaaatatactttttta 11348
>gb|AC185247.2| Pan troglodytes BAC clone CH251-7D5 from chromosome 15, complete sequence Length = 175295 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 22 aaataaaaatatactttttta 42 ||||||||||||||||||||| Sbjct: 167863 aaataaaaatatactttttta 167843
>emb|CR931785.6| Zebrafish DNA sequence from clone DKEY-230N5 in linkage group 7, complete sequence Length = 196531 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 25 taaaaatatacttttttatga 45 ||||||||||||||||||||| Sbjct: 103830 taaaaatatacttttttatga 103810
>gb|AY437837.1| Helicoverpa armigera large subunit ribosomal RNA gene, partial sequence; mitochondrial Length = 398 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 21 aaaataaaaatatactttttt 41 ||||||||||||||||||||| Sbjct: 74 aaaataaaaatatactttttt 54
>gb|AC127381.4| Homo sapiens BAC clone RP11-1360M22 from UL, complete sequence Length = 241627 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 22 aaataaaaatatactttttta 42 ||||||||||||||||||||| Sbjct: 216127 aaataaaaatatactttttta 216107
>emb|AL356362.21| Human DNA sequence from clone RP4-765A10 on chromosome 1p33 Contains the 3' end of the ZNF262 gene for zinc finger protein 262, a ribosomal protein L5 (RPL5) pseudogene, a novel gene and the 3' end of the gene forpolycystic kidney disease 1-like (PKD1-like), complete sequence Length = 116960 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 14 cattgagaaaataaaaatata 34 ||||||||||||||||||||| Sbjct: 30030 cattgagaaaataaaaatata 30010
>gb|AC183286.3| Pan troglodytes BAC clone CH251-56I13 from chromosome 15, complete sequence Length = 164317 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 22 aaataaaaatatactttttta 42 ||||||||||||||||||||| Sbjct: 90487 aaataaaaatatactttttta 90467
>emb|BX908384.15| Zebrafish DNA sequence from clone DKEY-38K3 in linkage group 13, complete sequence Length = 213699 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 21 aaaataaaaatatactttttt 41 ||||||||||||||||||||| Sbjct: 48122 aaaataaaaatatactttttt 48102
>emb|BX649403.4| Zebrafish DNA sequence from clone CH211-153M11 in linkage group 13, complete sequence Length = 170097 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 21 aaaataaaaatatactttttt 41 ||||||||||||||||||||| Sbjct: 74409 aaaataaaaatatactttttt 74429
>gb|AC182642.2| Pan troglodytes BAC clone CH251-216C21 from chromosome 21, complete sequence Length = 187371 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 22 aaataaaaatatactttttta 42 ||||||||||||||||||||| Sbjct: 40342 aaataaaaatatactttttta 40362
>gb|AC125393.6| Pan troglodytes clone rp43-22m15, complete sequence Length = 187256 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 22 aaataaaaatatactttttta 42 ||||||||||||||||||||| Sbjct: 125517 aaataaaaatatactttttta 125497
>gb|AC182470.3| Pan troglodytes BAC clone CH251-440F19 from chromosome 2, complete sequence Length = 163061 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 22 aaataaaaatatactttttta 42 ||||||||||||||||||||| Sbjct: 52460 aaataaaaatatactttttta 52480
>gb|AC145543.3| Homo sapiens chromosome UNKNOWN clone RP11-1278L23, complete sequence Length = 221027 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 22 aaataaaaatatactttttta 42 ||||||||||||||||||||| Sbjct: 192751 aaataaaaatatactttttta 192771
>gb|AC138701.3| Homo sapiens chromosome 15, clone RP11-79C23, complete sequence Length = 145239 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 22 aaataaaaatatactttttta 42 ||||||||||||||||||||| Sbjct: 94098 aaataaaaatatactttttta 94078
>gb|AC133208.3| Mus musculus BAC clone RP23-17O6 from chromosome unknown, complete sequence Length = 239189 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 82 gaaagtatgcattattatttc 102 ||||||||||||||||||||| Sbjct: 53303 gaaagtatgcattattatttc 53283
>emb|BX546504.9| Mouse DNA sequence from clone RP23-78N22 on chromosome X, complete sequence Length = 107447 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 82 gaaagtatgcattattatttc 102 ||||||||||||||||||||| Sbjct: 4440 gaaagtatgcattattatttc 4420
>dbj|AP006217.1| Homo sapiens genomic DNA, chromosome 18, clone:CMF18-52N8, complete sequence Length = 36071 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 22 aaataaaaatatactttttta 42 ||||||||||||||||||||| Sbjct: 24524 aaataaaaatatactttttta 24504
>gb|AC140407.5| Mus musculus BAC clone RP23-142K9 from chromosome unknown, complete sequence Length = 193404 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 82 gaaagtatgcattattatttc 102 ||||||||||||||||||||| Sbjct: 193177 gaaagtatgcattattatttc 193157
>gb|U63834.1|HSU63834 Human KIT protein and alternatively spliced KIT protein (KIT) gene, complete cds Length = 89603 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 22 aaataaaaatatactttttt 41 |||||||||||||||||||| Sbjct: 20043 aaataaaaatatactttttt 20024
>gb|AC147174.2| Xenopus tropicalis clone CH216-51H8, complete sequence Length = 191184 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 aaattgcattgagaaaataa 27 |||||||||||||||||||| Sbjct: 35774 aaattgcattgagaaaataa 35793
>gb|AC148454.2| Xenopus tropicalis clone CH216-161F9, complete sequence Length = 186914 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 aaattgcattgagaaaataa 27 |||||||||||||||||||| Sbjct: 34307 aaattgcattgagaaaataa 34326
>gb|AE017263.1| Mesoplasma florum L1 complete genome Length = 793224 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 19 agaaaataaaaatatactttttta 42 |||||||| ||||||||||||||| Sbjct: 368483 agaaaatataaatatactttttta 368506
>gb|AC147648.4| Homo sapiens BAC clone RP11-1413M17 from UL, complete sequence Length = 188992 Score = 40.1 bits (20), Expect = 5.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 85 agtatgcattattatttcccagcagcta 112 |||| |||||||||||| |||||||||| Sbjct: 47326 agtaagcattattatttgccagcagcta 47299
>gb|AC147206.2| Xenopus tropicalis clone CH216-39C21, complete sequence Length = 167795 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 aaattgcattgagaaaataa 27 |||||||||||||||||||| Sbjct: 75159 aaattgcattgagaaaataa 75178
>gb|AC145787.2| Xenopus tropicalis clone CH216-117C14, complete sequence Length = 150045 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 aataaaaatatactttttta 42 |||||||||||||||||||| Sbjct: 144699 aataaaaatatactttttta 144680
>gb|AC149517.2| Xenopus tropicalis clone CH216-47I1, complete sequence Length = 65693 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 aataaaaatatactttttta 42 |||||||||||||||||||| Sbjct: 31682 aataaaaatatactttttta 31663
>gb|AC147170.3| Xenopus tropicalis clone CH216-154J22, complete sequence Length = 163973 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 aaattgcattgagaaaataa 27 |||||||||||||||||||| Sbjct: 76693 aaattgcattgagaaaataa 76712
>gb|AC145613.2| Homo sapiens BAC clone RP11-1266H24 from UL, complete sequence Length = 178925 Score = 40.1 bits (20), Expect = 5.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 85 agtatgcattattatttcccagcagcta 112 |||| |||||||||||| |||||||||| Sbjct: 24138 agtaagcattattatttgccagcagcta 24111
>gb|AF254983.3| Homo sapiens chromosome 21 clone RP11-589M2 map p11-q21.1, complete sequence Length = 190711 Score = 40.1 bits (20), Expect = 5.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 85 agtatgcattattatttcccagcagcta 112 |||| |||||||||||| |||||||||| Sbjct: 110751 agtaagcattattatttgccagcagcta 110778
>gb|AC122244.5| Mus musculus BAC clone RP23-149I9 from chromosome 10, complete sequence Length = 187474 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 cccagcagctatttctgcaa 121 |||||||||||||||||||| Sbjct: 148673 cccagcagctatttctgcaa 148654
>gb|AC134251.3| Mus musculus BAC clone RP23-430D14 from chromosome 3, complete sequence Length = 189471 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 22 aaataaaaatatactttttt 41 |||||||||||||||||||| Sbjct: 28682 aaataaaaatatactttttt 28701
>gb|AC127277.2| Mus musculus BAC clone RP24-221P14 from chromosome 3, complete sequence Length = 159339 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 22 aaataaaaatatactttttt 41 |||||||||||||||||||| Sbjct: 1523 aaataaaaatatactttttt 1504
>gb|AC104692.1| Homo sapiens BAC clone RP11-208G20 from 7, complete sequence Length = 148606 Score = 40.1 bits (20), Expect = 5.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 85 agtatgcattattatttcccagcagcta 112 |||| |||||||||||| |||||||||| Sbjct: 41953 agtaagcattattatttgccagcagcta 41980
>ref|XM_670297.1| Plasmodium berghei strain ANKA hypothetical protein (PB000071.03.0) partial mRNA Length = 2976 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 19 agaaaataaaaatatactttttta 42 ||||||||||| |||||||||||| Sbjct: 963 agaaaataaaattatactttttta 986
>emb|AL121823.12|HSBB212L9 Human DNA sequence from clone RP13-212L9 on chromosome X Contains a novel gene, complete sequence Length = 185156 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 aaaataaaaatatacttttt 40 |||||||||||||||||||| Sbjct: 79062 aaaataaaaatatacttttt 79081
>emb|AL589701.9| Mouse DNA sequence from clone RP23-202F3 on chromosome 13 Contains a novel gene and the 3' end of a novel gene (1190005B03Rik), complete sequence Length = 219200 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 aaaataaaaatatacttttt 40 |||||||||||||||||||| Sbjct: 209625 aaaataaaaatatacttttt 209606
>emb|AL163201.2|HS21C001 Homo sapiens chromosome 21 segment HS21C001 Length = 281116 Score = 40.1 bits (20), Expect = 5.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 85 agtatgcattattatttcccagcagcta 112 |||| |||||||||||| |||||||||| Sbjct: 159327 agtaagcattattatttgccagcagcta 159354
>gb|AC147836.2| Xenopus tropicalis clone CH216-26D18, complete sequence Length = 157688 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 24 ataaaaatatacttttttat 43 |||||||||||||||||||| Sbjct: 13244 ataaaaatatacttttttat 13225
>gb|AC147740.3| Xenopus tropicalis BAc clone ISB1-90K22 containing btg1 gene, complete cds, complete sequence Length = 51057 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 24 ataaaaatatacttttttat 43 |||||||||||||||||||| Sbjct: 19885 ataaaaatatacttttttat 19866
>gb|AC006206.3| Homo sapiens 12 BAC RPCI11-319E16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 180388 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 23 aataaaaatatacttttttatgaa 46 |||||||||||| ||||||||||| Sbjct: 111020 aataaaaatatagttttttatgaa 110997
>gb|AC120338.4| Homo sapiens X BAC RP11-791N19 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 109001 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 20 gaaaataaaaatatactttt 39 |||||||||||||||||||| Sbjct: 96138 gaaaataaaaatatactttt 96119
>emb|BX571943.8| Zebrafish DNA sequence from clone DKEY-159C24 in linkage group 13, complete sequence Length = 193538 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 2 tactttaaattgcattgagaaaat 25 ||||||||||||||||| |||||| Sbjct: 41711 tactttaaattgcattgtgaaaat 41688
>gb|AC024568.6| Homo sapiens chromosome 5 clone CTD-2179L22, complete sequence Length = 128501 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 24 ataaaaatatacttttttat 43 |||||||||||||||||||| Sbjct: 23659 ataaaaatatacttttttat 23640
>gb|AC093917.3| Homo sapiens BAC clone RP11-800K23 from 4, complete sequence Length = 207691 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 20 gaaaataaaaatatactttt 39 |||||||||||||||||||| Sbjct: 95103 gaaaataaaaatatactttt 95084
>gb|AC093303.2| Homo sapiens chromosome 5 clone RP11-61K20, complete sequence Length = 163590 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 actgacatccaaatcaaata 140 |||||||||||||||||||| Sbjct: 126921 actgacatccaaatcaaata 126940
>gb|AC008493.5| Homo sapiens chromosome 5 clone CTC-427G18, complete sequence Length = 107137 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 ataaaaatatacttttttat 43 |||||||||||||||||||| Sbjct: 62793 ataaaaatatacttttttat 62812
>emb|BX470242.10| Zebrafish DNA sequence from clone CH211-195I24 in linkage group 16, complete sequence Length = 114149 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 ataaaaatatacttttttat 43 |||||||||||||||||||| Sbjct: 73334 ataaaaatatacttttttat 73353
>gb|AC013480.12| Homo sapiens BAC clone RP11-564O16 from 2, complete sequence Length = 128466 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 ataaaaatatacttttttat 43 |||||||||||||||||||| Sbjct: 52797 ataaaaatatacttttttat 52816
>gb|AC124243.3| Homo sapiens chromosome 8, clone CTD-3077F2, complete sequence Length = 188240 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 19 agaaaataaaaatatacttt 38 |||||||||||||||||||| Sbjct: 2709 agaaaataaaaatatacttt 2728
>gb|AC112197.3| Homo sapiens chromosome 5 clone RP11-442I12, complete sequence Length = 175775 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 ataaaaatatacttttttat 43 |||||||||||||||||||| Sbjct: 573 ataaaaatatacttttttat 592
>emb|BX088594.5| Zebrafish DNA sequence from clone RP71-1G17 in linkage group 1, complete sequence Length = 144022 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 aataaaaatatactttttta 42 |||||||||||||||||||| Sbjct: 37108 aataaaaatatactttttta 37089
>gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome Length = 3940880 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 gagaaaataaaaatatactt 37 |||||||||||||||||||| Sbjct: 543762 gagaaaataaaaatatactt 543781
>emb|BX950204.17| Zebrafish DNA sequence from clone DKEY-252P7 in linkage group 18, complete sequence Length = 133263 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 373 ctcttcaaaaacccgttggt 392 |||||||||||||||||||| Sbjct: 89119 ctcttcaaaaacccgttggt 89100
>gb|AC006552.7|AC006552 Homo sapiens chromosome 4 clone C0084L10 map 4p16, complete sequence Length = 185393 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 22 aaataaaaatatactttttt 41 |||||||||||||||||||| Sbjct: 157482 aaataaaaatatactttttt 157463
>gb|AC006226.4|AC006226 Homo sapiens chromosome 4 clone C0011C13 map 4p16, complete sequence Length = 162349 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 agaaaataaaaatatacttt 38 |||||||||||||||||||| Sbjct: 127948 agaaaataaaaatatacttt 127929
>dbj|AP006246.1| Homo sapiens genomic DNA, chromosome 8, clone:RP11-159M14, complete sequence Length = 178517 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 agaaaataaaaatatacttt 38 |||||||||||||||||||| Sbjct: 85572 agaaaataaaaatatacttt 85553
>emb|BX537681.1|HSM806610 Homo sapiens mRNA; cDNA DKFZp686I21208 (from clone DKFZp686I21208) Length = 3618 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 19 agaaaataaaaatatacttt 38 |||||||||||||||||||| Sbjct: 2594 agaaaataaaaatatacttt 2613
>gb|AC174607.1| Lycopersicon esculentum, complete sequence Length = 115283 Score = 40.1 bits (20), Expect = 5.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 15 attgagaaaataaaaatatactttttta 42 |||||| ||||||| ||||||||||||| Sbjct: 30169 attgagtaaataaagatatactttttta 30196
>gb|AC133180.3| Mus musculus BAC clone RP24-137D2 from chromosome 12, complete sequence Length = 123991 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 80 aagaaagtatgcattattatttcc 103 ||||||| |||||||||||||||| Sbjct: 90196 aagaaagaatgcattattatttcc 90219
>emb|BX005022.7| Zebrafish DNA sequence from clone DKEY-6N21 in linkage group 7, complete sequence Length = 217582 Score = 40.1 bits (20), Expect = 5.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 19 agaaaataaaaatatacttttttatgaa 46 |||| ||||||||||| ||||||||||| Sbjct: 170575 agaatataaaaatatagttttttatgaa 170602
>gb|AC163040.5| Mus musculus BAC clone RP23-71C23 from chromosome 12, complete sequence Length = 235086 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 80 aagaaagtatgcattattatttcc 103 ||||||| |||||||||||||||| Sbjct: 42204 aagaaagaatgcattattatttcc 42181
>gb|AC147899.2| Xenopus tropicalis clone CH216-53A2, complete sequence Length = 158405 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 24 ataaaaatatacttttttat 43 |||||||||||||||||||| Sbjct: 95744 ataaaaatatacttttttat 95725
>emb|AL591582.32| Mouse DNA sequence from clone RP23-403P3 on chromosome 12, complete sequence Length = 168814 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 aaaataaaaatatacttttt 40 |||||||||||||||||||| Sbjct: 80840 aaaataaaaatatacttttt 80821
>gb|AC124074.2| Homo sapiens chromosome 8, clone RP11-781O9, complete sequence Length = 180673 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 19 agaaaataaaaatatacttt 38 |||||||||||||||||||| Sbjct: 22800 agaaaataaaaatatacttt 22819
>dbj|AB020862.1| Homo sapiens genomic DNA of 8p21.3-p22 anti-oncogene of hepatocellular colorectal and non-small cell lung cancer , segment 5/11 Length = 100000 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 agaaaataaaaatatacttt 38 |||||||||||||||||||| Sbjct: 42527 agaaaataaaaatatacttt 42508
>emb|AL928615.3| Mouse DNA sequence from clone RP23-156E1 on chromosome 2, complete sequence Length = 118543 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 5 tttaaattgcattgagaaaataaa 28 ||||||||||||| |||||||||| Sbjct: 38155 tttaaattgcatttagaaaataaa 38178 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,189,114 Number of Sequences: 3902068 Number of extensions: 4189114 Number of successful extensions: 98845 Number of sequences better than 10.0: 97 Number of HSP's better than 10.0 without gapping: 97 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 98378 Number of HSP's gapped (non-prelim): 467 length of query: 417 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 395 effective length of database: 17,147,199,772 effective search space: 6773143909940 effective search space used: 6773143909940 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
