ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart06h08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CAKI_DROME (Q24210) Calcium/calmodulin-dependent protein kinase ... 31 0.82
2P2SAF_ARATH (O82660) Photosystem II stability/assembly factor HC... 30 1.1
3M4K4_HUMAN (O95819) Mitogen-activated protein kinase kinase kina... 30 1.8
4LAC1_CRYPA (Q03966) Laccase precursor (EC 1.10.3.2) (Benzenediol... 30 1.8
5M4K4_MOUSE (P97820) Mitogen-activated protein kinase kinase kina... 29 2.4
6NFAC1_MOUSE (O88942) Nuclear factor of activated T-cells, cytopl... 29 3.1
7NFAC1_PIG (O77638) Nuclear factor of activated T-cells, cytoplas... 28 4.1
8ASNS_ARATH (P49078) Asparagine synthetase [glutamine-hydrolyzing... 28 5.3
9LIN2_CAEEL (P54936) Protein lin-2 (Abnormal cell lineage protein 2) 27 9.0

>CAKI_DROME (Q24210) Calcium/calmodulin-dependent protein kinase (EC 2.7.11.17)|
           (CAKI) (Peripheral plasma membrane protein CaMGUK)
          Length = 898

 Score = 30.8 bits (68), Expect = 0.82
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 226 LHGGRIYRSRGTSVGDSLVSVAGQSRQHRS 137
           +HGG I+R     VGD +  + GQ  QH+S
Sbjct: 524 MHGGMIHRQATLHVGDEIREINGQPVQHQS 553



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>P2SAF_ARATH (O82660) Photosystem II stability/assembly factor HCF136,|
           chloroplast precursor
          Length = 403

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 244 GNLWCNLHGGRIYRSRGTSVGDSLVSVAGQSR 149
           G LW  + GG +Y S+GT + +    V  QSR
Sbjct: 300 GGLWLLVRGGGLYLSKGTGITEEFEEVPVQSR 331



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>M4K4_HUMAN (O95819) Mitogen-activated protein kinase kinase kinase kinase 4|
           (EC 2.7.11.1) (MAPK/ERK kinase kinase kinase 4) (MEK
           kinase kinase 4) (MEKKK 4) (HPK/GCK-like kinase HGK)
           (Nck-interacting kinase)
          Length = 1239

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 17/47 (36%), Positives = 27/47 (57%)
 Frame = +2

Query: 206 VDPSTMKVAPQISSSSAGTAVTLFLGFSYDLRPPRAFQ*KQPCGKGA 346
           +DP  ++++P     S+GT VT  +GFS D   P A + + P  KG+
Sbjct: 860 IDPRLLQISP-----SSGTTVTSVVGFSCDGMRPEAIR-QDPTRKGS 900



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>LAC1_CRYPA (Q03966) Laccase precursor (EC 1.10.3.2) (Benzenediol:oxygen|
           oxidoreductase) (Urishiol oxidase)
          Length = 591

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = -2

Query: 366 GSCGKSXAPFPQGCFYWNALGGLKSYENPKNKVTAVPADEE 244
           G CGKS  P+P    ++N      S  +P NK  A PAD E
Sbjct: 330 GFCGKSNNPYPAAIIHYNG----ASNSHPTNKGVA-PADHE 365



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>M4K4_MOUSE (P97820) Mitogen-activated protein kinase kinase kinase kinase 4|
           (EC 2.7.11.1) (MAPK/ERK kinase kinase kinase 4) (MEK
           kinase kinase 4) (MEKKK 4) (HPK/GCK-like kinase HGK)
           (Nck-interacting kinase)
          Length = 1233

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 17/47 (36%), Positives = 27/47 (57%)
 Frame = +2

Query: 206 VDPSTMKVAPQISSSSAGTAVTLFLGFSYDLRPPRAFQ*KQPCGKGA 346
           +DP  ++++P     S+GT VT  +GFS D   P A + + P  KG+
Sbjct: 854 IDPRLLQISP-----SSGTTVTSVVGFSCDGLRPEAIR-QDPTRKGS 894



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>NFAC1_MOUSE (O88942) Nuclear factor of activated T-cells, cytoplasmic 1 (NFAT|
           transcription complex cytosolic component) (NF-ATc1)
           (NF-ATc)
          Length = 717

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +2

Query: 209 DPSTMKVAPQISSSSAGTAVTLF-LGFSYDLRPPRAFQ*KQPCGKGAXDLPQDPFSRSMS 385
           DPS +  A  +SS S  +  + +   +SY    P+    + PC       P++ F RS+ 
Sbjct: 169 DPSCLSPASSLSSRSCNSEASSYESNYSYPYASPQTSPWQSPCVSPKTTDPEEGFPRSLG 228

Query: 386 S 388
           +
Sbjct: 229 A 229



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>NFAC1_PIG (O77638) Nuclear factor of activated T-cells, cytoplasmic 1 (NFAT|
           transcription complex cytosolic component) (NF-ATc1)
           (NF-ATc) (NFATmac)
          Length = 822

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = +2

Query: 209 DPSTMKVAPQISSSSAGTAVTLF-LGFSYDLRPPRAFQ*KQPCGKGAXDLPQDPFSRSMS 385
           DPS +  A  +SS S  +  + +   FSY    P+    + PC       P++ F R + 
Sbjct: 159 DPSCLSPASSLSSRSCNSEASSYESSFSYPYASPQTSPWQSPCVSPKTTDPEEGFPRGLG 218

Query: 386 S 388
           +
Sbjct: 219 A 219



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>ASNS_ARATH (P49078) Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)|
           (Glutamine-dependent asparagine synthetase)
          Length = 583

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -2

Query: 339 FPQGCFYWNALGGLKSYENPKNKVTAVPADEEE 241
           FP G FY + LGG K + NP     +VP+   E
Sbjct: 173 FPPGHFYSSKLGGFKQWYNPPWFNESVPSTPYE 205



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>LIN2_CAEEL (P54936) Protein lin-2 (Abnormal cell lineage protein 2)|
          Length = 961

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 226 LHGGRIYRSRGTSVGDSLVSVAGQSRQHRS 137
           +HGG I+R     VGD +  + G S  +RS
Sbjct: 575 MHGGMIHRQATLHVGDEIREINGMSVANRS 604


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,195,923
Number of Sequences: 219361
Number of extensions: 902688
Number of successful extensions: 2502
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2502
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 1375720320
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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