ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart06h08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|L28008.1|WHTWALI Triticum aestivum (wali7) mRNA, 3' end, part... 613 e-172
2gb|AY106409.1| Zea mays PCO130569 mRNA sequence 145 1e-31
3gb|BT017472.1| Zea mays clone EL01N0408D08.c mRNA sequence 129 7e-27
4gb|AY104105.1| Zea mays PCO130572 mRNA sequence 129 7e-27
5gb|BT016691.1| Zea mays clone Contig524 mRNA sequence 125 1e-25
6dbj|AK119185.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 2e-18
7dbj|AK104445.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 2e-18
8dbj|AK071762.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 2e-18
9dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 70 6e-09
10gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 70 6e-09
11emb|BX000499.1|CNS08CDP Oryza sativa chromosome 11, . BAC OSJNBa... 70 6e-09
12dbj|AK067141.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 4e-07
13dbj|AK104347.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 1e-06
14dbj|AK104102.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 1e-06
15dbj|AB012110.1| Vigna radiata mRNA for ARG10, complete cds 48 0.022
16dbj|AP004960.1| Lotus japonicus genomic DNA, chromosome 6, clone... 46 0.085
17emb|Z99976.1|MAZ99976 Musa acuminata mRNA for putative WALI7-rel... 46 0.085
18gb|AC025674.10| Homo sapiens chromosome 8, clone RP11-513O17, co... 44 0.34
19dbj|AP006689.1| Lotus japonicus genomic DNA, chromosome 4, clone... 44 0.34
20ref|XM_472347.1| Oryza sativa (japonica cultivar-group), predic... 42 1.3
21gb|AC011284.3| Homo sapiens BAC clone CTD-2326L19 from 7, comple... 42 1.3
22gb|AC142336.1| Pan troglodytes BAC clone RP43-39E5 from 7, compl... 42 1.3
23emb|AL731642.3|OSJN00289 Oryza sativa genomic DNA, chromosome 4,... 42 1.3
24gb|DQ107223.1| Astragalus brandegei clone 5 aluminum-induced pro... 42 1.3
25gb|DQ107222.1| Astragalus brandegei clone 6 aluminum-induced pro... 42 1.3
26gb|DQ107191.1| Astragalus falcatus clone 3 aluminum-induced prot... 42 1.3
27gb|DQ107190.1| Astragalus falcatus clone 2 aluminum-induced prot... 42 1.3
28gb|DQ107189.1| Astragalus falcatus clone 12 aluminum-induced pro... 42 1.3
29gb|DQ107188.1| Astragalus falcatus clone 11 aluminum-induced pro... 42 1.3
30gb|DQ107187.1| Astragalus falcatus clone 10 aluminum-induced pro... 42 1.3
31gb|DQ107178.1| Astragalus lonchocarpus clone 19 aluminum-induced... 42 1.3
32gb|DQ107177.1| Astragalus lonchocarpus clone 24 aluminum-induced... 42 1.3
33gb|DQ107176.1| Astragalus ceramicus clone 6 aluminum-induced pro... 42 1.3
34gb|DQ107175.1| Astragalus ceramicus clone 3 aluminum-induced pro... 42 1.3
35gb|DQ107174.1| Astragalus ceramicus clone 2 aluminum-induced pro... 42 1.3
36gb|DQ107171.1| Astragalus tetrapterus clone 21 aluminum-induced ... 42 1.3
37gb|DQ107170.1| Astragalus tetrapterus clone 20 aluminum-induced ... 42 1.3
38dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
39gb|AC129093.34| Mus musculus strain C57BL/6J clone rp23-198m10 m... 40 5.3
40gb|AF009660.1|HSTCRBK17 Homo sapiens T cell receptor beta locus,... 40 5.3
41gb|AC103380.13| Mus musculus chromosome 1, clone RP24-263A16, co... 40 5.3
42ref|NG_001333.1| Homo sapiens T cell receptor beta locus (TRB@) ... 40 5.3
43gb|AC021016.5| Homo sapiens BAC clone RP11-378A13 from 2, comple... 40 5.3
44gb|AC117662.13| Mus musculus chromosome 16, clone RP23-351D19, c... 40 5.3
45emb|CT010426.3| Mouse DNA sequence from clone RP23-17A17 on chro... 40 5.3
46gb|AC131722.4| Mus musculus BAC clone RP23-143M5 from chromosome... 40 5.3
47gb|AC118608.7| Mus musculus chromosome 17, clone RP23-478J10, co... 40 5.3
48gb|AC153359.4| Mus musculus BAC clone RP23-477I1 from chromosome... 40 5.3
49gb|AF229163.1|AF229163 Homo sapiens natural resistance-associate... 40 5.3
50emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome 40 5.3
51gb|U66059.1| Human germline T-cell receptor beta chain Dopamine-... 40 5.3
52gb|AC138106.9| Mus musculus chromosome 1, clone RP23-278C19, com... 40 5.3 
>gb|L28008.1|WHTWALI Triticum aestivum (wali7) mRNA, 3' end, partial cds
          Length = 956

 Score =  613 bits (309), Expect = e-172
 Identities = 374/394 (94%), Gaps = 3/394 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttgaatcccctgcgagaatttgaagagctagagatacagatgatcagatacacaaccga 60
           ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 890 cttgaatccactgcgagaatttgaacagctagagatacagatgatcagatacacaaccga 831

                                                                       
Query: 61  acagttcccataagatcacaagagagagtagcacacgcgccttgttgcattatattacac 120
           ||||||| ||||||||||||||||||  ||||||||||||||||||||||||||||||||
Sbjct: 830 acagttcacataagatcacaagagag--tagcacacgcgccttgttgcattatattacac 773

                                                                       
Query: 121 caccaccacctacacacgaccggtgttgcctgctttgcccagcgacggaaacgagagaat 180
           |||||||| |||||||||| ||| |||||||||||||||||||||| || ||| ||||||
Sbjct: 772 caccaccatctacacacgaacggcgttgcctgctttgcccagcgacagagacgggagaat 713

                                                                       
Query: 181 ctcctactgaagtgccgcgagaacggtagatccttccaccatgaaggttgcaccacagat 240
           |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||
Sbjct: 712 ctcctactgaagtgccgcgacaacggtagatccttccaccatgaaggt-gcaccacatat 654

                                                                       
Query: 241 ttcctcctcatctgcaggcacagcggtcaccttgttcttgggattctcgtacgacttgag 300
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 653 ttcctcctcatctgcaggcacagcggtgaccttgttcttgggattctcgtacgacttgag 594

                                                                       
Query: 301 gcctccnagggcgttccagtagaagcagccttgcgggaaaggcgccngtgatttgccgca 360
           |||||| || ||||||||||||||||| |||||||||||||||||| |||| ||||||||
Sbjct: 593 gcctccaagagcgttccagtagaagcaaccttgcgggaaaggcgccagtgacttgccgca 534

                                             
Query: 361 agatcctttcagcaggtcgatgtcgtcggagaag 394
           ||||||||||||||||||||||||||||||||||
Sbjct: 533 agatcctttcagcaggtcgatgtcgtcggagaag 500
to top
>gb|AY106409.1| Zea mays PCO130569 mRNA sequence
          Length = 1186

 Score =  145 bits (73), Expect = 1e-31
 Identities = 155/183 (84%)
 Strand = Plus / Minus

                                                                       
Query: 212 ccttccaccatgaaggttgcaccacagatttcctcctcatctgcaggcacagcggtcacc 271
           |||||||||  ||||||||| || |||||||||||||| | |||||| || || ||||| 
Sbjct: 768 ccttccacctggaaggttgcgccgcagatttcctcctcgtttgcaggaacggcagtcact 709

                                                                       
Query: 272 ttgttcttgggattctcgtacgacttgaggcctccnagggcgttccagtagaagcagcct 331
           ||||||||||||||||||||  |||| |  ||||| ||||| ||  |||||||||| |||
Sbjct: 708 ttgttcttgggattctcgtagcacttcaatcctccaagggcattagagtagaagcaacct 649

                                                                       
Query: 332 tgcgggaaaggcgccngtgatttgccgcaagatcctttcagcaggtcgatgtcgtcggag 391
           ||||||||||||||  | || |||||||| || ||||| |||| ||||||||||||||||
Sbjct: 648 tgcgggaaaggcgcgagggacttgccgcaggagcctttgagcacgtcgatgtcgtcggag 589

              
Query: 392 aag 394
           |||
Sbjct: 588 aag 586
to top
>gb|BT017472.1| Zea mays clone EL01N0408D08.c mRNA sequence
          Length = 1157

 Score =  129 bits (65), Expect = 7e-27
 Identities = 117/135 (86%)
 Strand = Plus / Minus

                                                                       
Query: 260 acagcggtcaccttgttcttgggattctcgtacgacttgaggcctccnagggcgttccag 319
           |||||||| ||||||| |||||| ||||||||  ||||||| ||||| ||||||||  ||
Sbjct: 744 acagcggtgaccttgtgcttggggttctcgtagcacttgagccctccgagggcgttggag 685

                                                                       
Query: 320 tagaagcagccttgcgggaaaggcgccngtgatttgccgcaagatcctttcagcaggtcg 379
           |||||||||||||||||||| |||||  | || |||||||| || ||||| |||| ||||
Sbjct: 684 tagaagcagccttgcgggaacggcgcgagcgacttgccgcatgagcctttgagcatgtcg 625

                          
Query: 380 atgtcgtcggagaag 394
           |||||||||||||||
Sbjct: 624 atgtcgtcggagaag 610
to top
>gb|AY104105.1| Zea mays PCO130572 mRNA sequence
          Length = 1280

 Score =  129 bits (65), Expect = 7e-27
 Identities = 117/135 (86%)
 Strand = Plus / Minus

                                                                       
Query: 260 acagcggtcaccttgttcttgggattctcgtacgacttgaggcctccnagggcgttccag 319
           |||||||| ||||||| |||||| ||||||||  ||||||| ||||| ||||||||  ||
Sbjct: 734 acagcggtgaccttgtgcttggggttctcgtagcacttgagccctccgagggcgttggag 675

                                                                       
Query: 320 tagaagcagccttgcgggaaaggcgccngtgatttgccgcaagatcctttcagcaggtcg 379
           |||||||||||||||||||| |||||  | || |||||||| || ||||| |||| ||||
Sbjct: 674 tagaagcagccttgcgggaacggcgcgagcgacttgccgcatgagcctttgagcatgtcg 615

                          
Query: 380 atgtcgtcggagaag 394
           |||||||||||||||
Sbjct: 614 atgtcgtcggagaag 600
to top
>gb|BT016691.1| Zea mays clone Contig524 mRNA sequence
          Length = 1198

 Score =  125 bits (63), Expect = 1e-25
 Identities = 157/189 (83%)
 Strand = Plus / Plus

                                                                       
Query: 206 gtagatccttccaccatgaaggttgcaccacagatttcctcctcatctgcaggcacagcg 265
           |||| ||||||||||  ||||| ||| || || ||||||||||| | |||||| || || 
Sbjct: 419 gtagctccttccacctggaagggtgcgccgcaaatttcctcctcgtttgcaggaacggca 478

                                                                       
Query: 266 gtcaccttgttcttgggattctcgtacgacttgaggcctccnagggcgttccagtagaag 325
           ||||| ||||||||||||||||||||  |||| |  ||||| ||||| ||  ||||||||
Sbjct: 479 gtcactttgttcttgggattctcgtagcacttcaatcctccaagggcattagagtagaag 538

                                                                       
Query: 326 cagccttgcgggaaaggcgccngtgatttgccgcaagatcctttcagcaggtcgatgtcg 385
           || || ||||||||||||||  | || |||||||| || ||||| |||| ||||||||||
Sbjct: 539 caaccctgcgggaaaggcgcgagggacttgccgcaggagcctttgagcacgtcgatgtcg 598

                    
Query: 386 tcggagaag 394
           |||||||||
Sbjct: 599 tcggagaag 607
to top
>dbj|AK119185.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-G04, full
           insert sequence
          Length = 1135

 Score =  101 bits (51), Expect = 2e-18
 Identities = 136/165 (82%)
 Strand = Plus / Minus

                                                                       
Query: 222 tgaaggttgcaccacagatttcctcctcatctgcaggcacagcggtcaccttgttcttgg 281
           ||||||||||||||||||| || || |||| |||||| ||||| |||||||||||||| |
Sbjct: 887 tgaaggttgcaccacagatctcttcttcatttgcaggaacagcagtcaccttgttctttg 828

                                                                       
Query: 282 gattctcgtacgacttgaggcctccnagggcgttccagtagaagcagccttgcgggaaag 341
           | ||||| ||  |||| | |||||| || || ||  | |||||||| ||||| |||||||
Sbjct: 827 ggttctcatagcacttcaagcctccaagagcattggaatagaagcaaccttgtgggaaag 768

                                                        
Query: 342 gcgccngtgatttgccgcaagatcctttcagcaggtcgatgtcgt 386
           | ||  |||| ||||| || |||||||| |||||||| |||||||
Sbjct: 767 gtgcaagtgacttgccacatgatcctttaagcaggtcaatgtcgt 723
to top
>dbj|AK104445.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-B05, full
           insert sequence
          Length = 1124

 Score =  101 bits (51), Expect = 2e-18
 Identities = 136/165 (82%)
 Strand = Plus / Minus

                                                                       
Query: 222 tgaaggttgcaccacagatttcctcctcatctgcaggcacagcggtcaccttgttcttgg 281
           ||||||||||||||||||| || || |||| |||||| ||||| |||||||||||||| |
Sbjct: 887 tgaaggttgcaccacagatctcttcttcatttgcaggaacagcagtcaccttgttctttg 828

                                                                       
Query: 282 gattctcgtacgacttgaggcctccnagggcgttccagtagaagcagccttgcgggaaag 341
           | ||||| ||  |||| | |||||| || || ||  | |||||||| ||||| |||||||
Sbjct: 827 ggttctcatagcacttcaagcctccaagagcattggaatagaagcaaccttgtgggaaag 768

                                                        
Query: 342 gcgccngtgatttgccgcaagatcctttcagcaggtcgatgtcgt 386
           | ||  |||| ||||| || |||||||| |||||||| |||||||
Sbjct: 767 gtgcaagtgacttgccacatgatcctttaagcaggtcaatgtcgt 723
to top
>dbj|AK071762.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023109H06, full
           insert sequence
          Length = 1136

 Score =  101 bits (51), Expect = 2e-18
 Identities = 136/165 (82%)
 Strand = Plus / Minus

                                                                       
Query: 222 tgaaggttgcaccacagatttcctcctcatctgcaggcacagcggtcaccttgttcttgg 281
           ||||||||||||||||||| || || |||| |||||| ||||| |||||||||||||| |
Sbjct: 888 tgaaggttgcaccacagatctcttcttcatttgcaggaacagcagtcaccttgttctttg 829

                                                                       
Query: 282 gattctcgtacgacttgaggcctccnagggcgttccagtagaagcagccttgcgggaaag 341
           | ||||| ||  |||| | |||||| || || ||  | |||||||| ||||| |||||||
Sbjct: 828 ggttctcatagcacttcaagcctccaagagcattggaatagaagcaaccttgtgggaaag 769

                                                        
Query: 342 gcgccngtgatttgccgcaagatcctttcagcaggtcgatgtcgt 386
           | ||  |||| ||||| || |||||||| |||||||| |||||||
Sbjct: 768 gtgcaagtgacttgccacatgatcctttaagcaggtcaatgtcgt 724
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 59/67 (88%)
 Strand = Plus / Plus

                                                                           
Query: 222     tgaaggttgcaccacagatttcctcctcatctgcaggcacagcggtcaccttgttcttgg 281
               ||||||||||||||||||| || || |||| |||||| ||||| |||||||||||||| |
Sbjct: 2187475 tgaaggttgcaccacagatctcttcttcatttgcaggaacagcagtcaccttgttctttg 2187534

                      
Query: 282     gattctc 288
               | |||||
Sbjct: 2187535 ggttctc 2187541
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 59/67 (88%)
 Strand = Plus / Plus

                                                                           
Query: 222     tgaaggttgcaccacagatttcctcctcatctgcaggcacagcggtcaccttgttcttgg 281
               ||||||||||||||||||| || || |||| |||||| ||||| |||||||||||||| |
Sbjct: 2195256 tgaaggttgcaccacagatctcttcttcatttgcaggaacagcagtcaccttgttctttg 2195315

                      
Query: 282     gattctc 288
               | |||||
Sbjct: 2195316 ggttctc 2195322
to top
>emb|BX000499.1|CNS08CDP Oryza sativa chromosome 11, . BAC OSJNBa0039D03 of library OSJNBa from
             chromosome 11 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 125593

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 59/67 (88%)
 Strand = Plus / Plus

                                                                         
Query: 222   tgaaggttgcaccacagatttcctcctcatctgcaggcacagcggtcaccttgttcttgg 281
             ||||||||||||||||||| || || |||| |||||| ||||| |||||||||||||| |
Sbjct: 84169 tgaaggttgcaccacagatctcttcttcatttgcaggaacagcagtcaccttgttctttg 84228

                    
Query: 282   gattctc 288
             | |||||
Sbjct: 84229 ggttctc 84235
to top
>dbj|AK067141.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013095J21, full
           insert sequence
          Length = 1130

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 64/75 (85%)
 Strand = Plus / Minus

                                                                       
Query: 320 tagaagcagccttgcgggaaaggcgccngtgatttgccgcaagatcctttcagcaggtcg 379
           |||||||||||||| |||||||| ||  | || ||||| || |||||||| |||||||||
Sbjct: 750 tagaagcagccttgtgggaaaggtgcaagagacttgccacacgatcctttaagcaggtcg 691

                          
Query: 380 atgtcgtcggagaag 394
           |||| ||| ||||||
Sbjct: 690 atgttgtcagagaag 676



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 70/83 (84%)
 Strand = Plus / Minus

                                                                       
Query: 206 gtagatccttccaccatgaaggttgcaccacagatttcctcctcatctgcaggcacagcg 265
           ||||||||||||||| ||||||||||||| || ||||| || || |  ||||| || |||
Sbjct: 870 gtagatccttccaccttgaaggttgcaccgcaaatttcttcttctttggcaggaactgcg 811

                                  
Query: 266 gtcaccttgttcttgggattctc 288
           |||||||||| ||| || |||||
Sbjct: 810 gtcaccttgtgctttgggttctc 788
to top
>dbj|AK104347.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-F10, full
           insert sequence
          Length = 1101

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 70/83 (84%)
 Strand = Plus / Minus

                                                                       
Query: 206 gtagatccttccaccatgaaggttgcaccacagatttcctcctcatctgcaggcacagcg 265
           ||||||||||||||| ||||||||||||| || ||||| || || |  ||||| || |||
Sbjct: 857 gtagatccttccaccttgaaggttgcaccgcaaatttcttcttctttggcaggaactgcg 798

                                  
Query: 266 gtcaccttgttcttgggattctc 288
           |||||||||| ||| || |||||
Sbjct: 797 gtcaccttgtgctttgggttctc 775



 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 63/75 (84%)
 Strand = Plus / Minus

                                                                       
Query: 320 tagaagcagccttgcgggaaaggcgccngtgatttgccgcaagatcctttcagcaggtcg 379
           |||||||||||||| |||||||| ||  | || ||||| || |||||||| |||||||| 
Sbjct: 737 tagaagcagccttgtgggaaaggtgcaagagacttgccacacgatcctttaagcaggtca 678

                          
Query: 380 atgtcgtcggagaag 394
           |||| ||| ||||||
Sbjct: 677 atgttgtcagagaag 663
to top
>dbj|AK104102.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-202-B06, full
           insert sequence
          Length = 1099

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 70/83 (84%)
 Strand = Plus / Minus

                                                                       
Query: 206 gtagatccttccaccatgaaggttgcaccacagatttcctcctcatctgcaggcacagcg 265
           ||||||||||||||| ||||||||||||| || ||||| || || |  ||||| || |||
Sbjct: 869 gtagatccttccaccttgaaggttgcaccgcaaatttcttcttctttggcaggaactgcg 810

                                  
Query: 266 gtcaccttgttcttgggattctc 288
           |||||||||| ||| || |||||
Sbjct: 809 gtcaccttgtgctttgggttctc 787



 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 63/75 (84%)
 Strand = Plus / Minus

                                                                       
Query: 320 tagaagcagccttgcgggaaaggcgccngtgatttgccgcaagatcctttcagcaggtcg 379
           |||||||||||||| |||||||| ||  | || ||||| || |||||||| |||||||| 
Sbjct: 749 tagaagcagccttgtgggaaaggtgcaagagacttgccacacgatcctttaagcaggtca 690

                          
Query: 380 atgtcgtcggagaag 394
           |||| ||| ||||||
Sbjct: 689 atgttgtcagagaag 675
to top
>dbj|AB012110.1| Vigna radiata mRNA for ARG10, complete cds
          Length = 959

 Score = 48.1 bits (24), Expect = 0.022
 Identities = 66/80 (82%)
 Strand = Plus / Minus

                                                                       
Query: 209 gatccttccaccatgaaggttgcaccacagatttcctcctcatctgcaggcacagcggtc 268
           ||||| |||||| | || |||||||| ||||||||||| || || ||||| || || || 
Sbjct: 726 gatccctccaccttaaaagttgcaccccagatttcctcttcttcggcaggtactgcagta 667

                               
Query: 269 accttgttcttgggattctc 288
           | ||||||||| ||||||||
Sbjct: 666 atcttgttctttggattctc 647
to top
>dbj|AP004960.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT19B18, TM0139,
             complete sequence
          Length = 106089

 Score = 46.1 bits (23), Expect = 0.085
 Identities = 56/67 (83%)
 Strand = Plus / Minus

                                                                         
Query: 222   tgaaggttgcaccacagatttcctcctcatctgcaggcacagcggtcaccttgttcttgg 281
             ||||||||||||| || ||||||||||| || ||||| || || || | ||| ||||| |
Sbjct: 71058 tgaaggttgcaccccaaatttcctcctcctcagcaggaactgcagtgatcttattcttag 70999

                    
Query: 282   gattctc 288
             |||||||
Sbjct: 70998 gattctc 70992
to top
>emb|Z99976.1|MAZ99976 Musa acuminata mRNA for putative WALI7-related protein (clone pBAN
           ED141)
          Length = 750

 Score = 46.1 bits (23), Expect = 0.085
 Identities = 80/99 (80%)
 Strand = Plus / Plus

                                                                       
Query: 193 tgccgcgagaacggtagatccttccaccatgaaggttgcaccacagatttcctcctcatc 252
           |||||||| ||| | ||| ||||||||| |||| || |||||||| | ||| ||||| | 
Sbjct: 324 tgccgcgacaaccgcagacccttccaccttgaaagtggcaccacatacttcttcctcgtt 383

                                                  
Query: 253 tgcaggcacagcggtcaccttgttcttgggattctcgta 291
           | || | || ||||| ||||||| ||| |||||||||||
Sbjct: 384 ttcaagaacggcggtgaccttgtgcttaggattctcgta 422
to top
>gb|AC025674.10| Homo sapiens chromosome 8, clone RP11-513O17, complete sequence
          Length = 152451

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 19    atttgaagagctagagatacag 40
             ||||||||||||||||||||||
Sbjct: 75017 atttgaagagctagagatacag 75038
to top
>dbj|AP006689.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT27F14, TM0387,
             complete sequence
          Length = 96031

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 222   tgaaggttgcaccacagatttcctcctcat 251
             ||||||||||||| ||||||||||| ||||
Sbjct: 41219 tgaaggttgcaccccagatttcctcttcat 41248
to top
>ref|XM_472347.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 138

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 368 ttcagcaggtcgatgtcgtcggaga 392
           ||||||||||||||||||| |||||
Sbjct: 32  ttcagcaggtcgatgtcgttggaga 8
to top
>gb|AC011284.3| Homo sapiens BAC clone CTD-2326L19 from 7, complete sequence
          Length = 92959

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 21    ttgaagagctagagatacaga 41
             |||||||||||||||||||||
Sbjct: 59521 ttgaagagctagagatacaga 59541
to top
>gb|AC142336.1| Pan troglodytes BAC clone RP43-39E5 from 7, complete sequence
          Length = 75539

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 21    ttgaagagctagagatacaga 41
             |||||||||||||||||||||
Sbjct: 47729 ttgaagagctagagatacaga 47709
to top
>emb|AL731642.3|OSJN00289 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0014D23,
            complete sequence
          Length = 133759

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 368  ttcagcaggtcgatgtcgtcggaga 392
            ||||||||||||||||||| |||||
Sbjct: 9969 ttcagcaggtcgatgtcgttggaga 9945
to top
>gb|DQ107223.1| Astragalus brandegei clone 5 aluminum-induced protein-like gene,
           partial sequence
          Length = 327

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 224 aaggttgcaccacagatttcctcctcatctgcaggcacagc 264
           |||||||| || ||||||||||| ||||  |||||||||||
Sbjct: 160 aaggttgcgccccagatttcctcatcattagcaggcacagc 200
to top
>gb|DQ107222.1| Astragalus brandegei clone 6 aluminum-induced protein-like gene,
           partial sequence
          Length = 320

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 224 aaggttgcaccacagatttcctcctcatctgcaggcacagc 264
           |||||||| || ||||||||||| ||||  |||||||||||
Sbjct: 152 aaggttgcgccccagatttcctcatcattagcaggcacagc 192
to top
>gb|DQ107191.1| Astragalus falcatus clone 3 aluminum-induced protein-like gene,
           partial sequence
          Length = 332

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 224 aaggttgcaccacagatttcctcctcatctgcaggcacagc 264
           |||||||| || ||||||||||| ||||  |||||||||||
Sbjct: 167 aaggttgcgccccagatttcctcatcattagcaggcacagc 207
to top
>gb|DQ107190.1| Astragalus falcatus clone 2 aluminum-induced protein-like gene,
           partial sequence
          Length = 332

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 224 aaggttgcaccacagatttcctcctcatctgcaggcacagc 264
           |||||||| || ||||||||||| ||||  |||||||||||
Sbjct: 167 aaggttgcgccccagatttcctcatcattagcaggcacagc 207
to top
>gb|DQ107189.1| Astragalus falcatus clone 12 aluminum-induced protein-like gene,
           partial sequence
          Length = 332

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 224 aaggttgcaccacagatttcctcctcatctgcaggcacagc 264
           |||||||| || ||||||||||| ||||  |||||||||||
Sbjct: 167 aaggttgcgccccagatttcctcatcattagcaggcacagc 207
to top
>gb|DQ107188.1| Astragalus falcatus clone 11 aluminum-induced protein-like gene,
           partial sequence
          Length = 332

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 224 aaggttgcaccacagatttcctcctcatctgcaggcacagc 264
           |||||||| || ||||||||||| ||||  |||||||||||
Sbjct: 167 aaggttgcgccccagatttcctcatcattagcaggcacagc 207
to top
>gb|DQ107187.1| Astragalus falcatus clone 10 aluminum-induced protein-like gene,
           partial sequence
          Length = 331

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 224 aaggttgcaccacagatttcctcctcatctgcaggcacagc 264
           |||||||| || ||||||||||| ||||  |||||||||||
Sbjct: 167 aaggttgcgccccagatttcctcatcattagcaggcacagc 207
to top
>gb|DQ107178.1| Astragalus lonchocarpus clone 19 aluminum-induced protein-like
           gene, partial sequence
          Length = 338

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 224 aaggttgcaccacagatttcctcctcatctgcaggcacagc 264
           |||||||| || ||||||||||| ||||  |||||||||||
Sbjct: 172 aaggttgcgccccagatttcctcatcattagcaggcacagc 212
to top
>gb|DQ107177.1| Astragalus lonchocarpus clone 24 aluminum-induced protein-like
           gene, partial sequence
          Length = 335

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 224 aaggttgcaccacagatttcctcctcatctgcaggcacagc 264
           |||||||| || ||||||||||| ||||  |||||||||||
Sbjct: 172 aaggttgcgccccagatttcctcatcattagcaggcacagc 212
to top
>gb|DQ107176.1| Astragalus ceramicus clone 6 aluminum-induced protein-like gene,
           partial sequence
          Length = 334

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 224 aaggttgcaccacagatttcctcctcatctgcaggcacagc 264
           |||||||| || ||||||||||| ||||  |||||||||||
Sbjct: 172 aaggttgcgccccagatttcctcatcattagcaggcacagc 212
to top
>gb|DQ107175.1| Astragalus ceramicus clone 3 aluminum-induced protein-like gene,
           partial sequence
          Length = 334

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 224 aaggttgcaccacagatttcctcctcatctgcaggcacagc 264
           |||||||| || ||||||||||| ||||  |||||||||||
Sbjct: 172 aaggttgcgccccagatttcctcatcattagcaggcacagc 212
to top
>gb|DQ107174.1| Astragalus ceramicus clone 2 aluminum-induced protein-like gene,
           partial sequence
          Length = 335

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 224 aaggttgcaccacagatttcctcctcatctgcaggcacagc 264
           |||||||| || ||||||||||| ||||  |||||||||||
Sbjct: 172 aaggttgcgccccagatttcctcatcattagcaggcacagc 212
to top
>gb|DQ107171.1| Astragalus tetrapterus clone 21 aluminum-induced protein-like gene,
           partial sequence
          Length = 336

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 224 aaggttgcaccacagatttcctcctcatctgcaggcacagc 264
           |||||||| || ||||||||||| ||||  |||||||||||
Sbjct: 172 aaggttgcgccccagatttcctcatcattagcaggcacagc 212
to top
>gb|DQ107170.1| Astragalus tetrapterus clone 20 aluminum-induced protein-like gene,
           partial sequence
          Length = 337

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 224 aaggttgcaccacagatttcctcctcatctgcaggcacagc 264
           |||||||| || ||||||||||| ||||  |||||||||||
Sbjct: 172 aaggttgcgccccagatttcctcatcattagcaggcacagc 212
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 368      ttcagcaggtcgatgtcgtcggaga 392
                ||||||||||||||||||| |||||
Sbjct: 19721507 ttcagcaggtcgatgtcgttggaga 19721483
to top
>gb|AC129093.34| Mus musculus strain C57BL/6J clone rp23-198m10 map 19, complete
             sequence
          Length = 190697

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 25    agagctagagatacagatga 44
             ||||||||||||||||||||
Sbjct: 35605 agagctagagatacagatga 35586
to top
>gb|AF009660.1|HSTCRBK17 Homo sapiens T cell receptor beta locus, TCRBV7S3A2 to TCRBV12S2 region
          Length = 62262

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 230   gcaccacagatttcctcctcatct 253
             |||||||||||||| |||||||||
Sbjct: 58705 gcaccacagatttcttcctcatct 58682
to top
>gb|AC103380.13| Mus musculus chromosome 1, clone RP24-263A16, complete sequence
          Length = 173136

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 25    agagctagagatacagatga 44
             ||||||||||||||||||||
Sbjct: 16259 agagctagagatacagatga 16278
to top
>ref|NG_001333.1| Homo sapiens T cell receptor beta locus (TRB@) on chromosome 7
          Length = 684973

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 230    gcaccacagatttcctcctcatct 253
              |||||||||||||| |||||||||
Sbjct: 218594 gcaccacagatttcttcctcatct 218571
to top
>gb|AC021016.5| Homo sapiens BAC clone RP11-378A13 from 2, complete sequence
          Length = 191755

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 118    caccaccaccacctacacac 137
              ||||||||||||||||||||
Sbjct: 153105 caccaccaccacctacacac 153124
to top
>gb|AC117662.13| Mus musculus chromosome 16, clone RP23-351D19, complete sequence
          Length = 293822

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 118    caccaccaccacctacacac 137
              ||||||||||||||||||||
Sbjct: 167383 caccaccaccacctacacac 167364
to top
>emb|CT010426.3| Mouse DNA sequence from clone RP23-17A17 on chromosome 17, complete
             sequence
          Length = 221525

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 118   caccaccaccacctacacac 137
             ||||||||||||||||||||
Sbjct: 94535 caccaccaccacctacacac 94554
to top
>gb|AC131722.4| Mus musculus BAC clone RP23-143M5 from chromosome 9, complete sequence
          Length = 228144

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 26     gagctagagatacagatgat 45
              ||||||||||||||||||||
Sbjct: 164138 gagctagagatacagatgat 164119
to top
>gb|AC118608.7| Mus musculus chromosome 17, clone RP23-478J10, complete sequence
          Length = 196566

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 118   caccaccaccacctacacac 137
             ||||||||||||||||||||
Sbjct: 19345 caccaccaccacctacacac 19364
to top
>gb|AC153359.4| Mus musculus BAC clone RP23-477I1 from chromosome 9, complete sequence
          Length = 195269

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 26     gagctagagatacagatgat 45
              ||||||||||||||||||||
Sbjct: 168771 gagctagagatacagatgat 168790
to top
>gb|AF229163.1|AF229163 Homo sapiens natural resistance-associated macrophage protein 1
             (SLC11A1) gene, complete cds, alternatively spliced; and
             nuclear LIM interactor-interacting factor (NLI-IF) gene,
             complete cds
          Length = 32198

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 118   caccaccaccacctacacac 137
             ||||||||||||||||||||
Sbjct: 31094 caccaccaccacctacacac 31113
to top
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome
          Length = 2595221

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 370    cagcaggtcgatgtcgtcgg 389
              ||||||||||||||||||||
Sbjct: 969612 cagcaggtcgatgtcgtcgg 969631
to top
>gb|U66059.1| Human germline T-cell receptor beta chain Dopamine-beta-hydroxylase-like,
              TRY1, TRY2, TRY3, TCRBV27S1P, TCRBV22S1A2N1T, TCRBV9S1A1T,
              TCRBV7S1A1N2T, TCRBV5S1A1T, TCRBV13S3, TCRBV6S7P,
              TCRBV7S3A2T, TCRBV13S2A1T, TCRBV9S2A2PT, TCRBV7S2A1N4T,
              TCRBV13S9/13S2A1T, TCRBV6S5A1N1, TCRBV30S1P, TCRBV31S1,
              TCRBV13S5, TCRBV6S1A1N1, TCRBV32S1P, TCRBV5S5P,
              TCRBV1S1A1N1, TCRBV12S2A1T, TCRBV21S1, TCRBV8S4P,
              TCRBV12S3, TCRBV21S3A2N2T, TCRBV8S5P, TCRBV13S1 genes from
              bases 1 to 267156 (section 1 of 3)
          Length = 267156

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 230    gcaccacagatttcctcctcatct 253
              |||||||||||||| |||||||||
Sbjct: 218594 gcaccacagatttcttcctcatct 218571
to top
>gb|AC138106.9| Mus musculus chromosome 1, clone RP23-278C19, complete sequence
          Length = 173026

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 25     agagctagagatacagatga 44
              ||||||||||||||||||||
Sbjct: 103588 agagctagagatacagatga 103607


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,153,651
Number of Sequences: 3902068
Number of extensions: 3153651
Number of successful extensions: 71265
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 71083
Number of HSP's gapped (non-prelim): 180
length of query: 394
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 372
effective length of database: 17,147,199,772
effective search space: 6378758315184
effective search space used: 6378758315184
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top