ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart06h02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1EXB1A_MAIZE (P58738) Beta-expansin 1a precursor (Pollen allergen... 37 0.021
2EXPB4_ARATH (Q9SHD1) Putative beta-expansin 4 precursor (AtEXPB4... 37 0.021
3EXB1B_MAIZE (Q07154) Beta-expansin 1b (Pollen allergen Zea m 1) ... 37 0.027
4EXPB2_ARATH (Q9SHY6) Putative beta-expansin 2 precursor (AtEXPB2... 35 0.079
5MPAC1_CYNDA (O04701) Major pollen allergen Cyn d 1 35 0.10
6EXPB1_ARATH (Q9SKU2) Beta-expansin 1 precursor (AtEXPB1) (At-EXP... 29 5.7
7EXPB5_ARATH (Q9M203) Putative beta-expansin 5 precursor (AtEXPB5... 28 7.4
8EXPB3_ARATH (Q9M0I2) Beta-expansin 3 precursor (AtEXPB3) (At-EXP... 28 7.4
9E78C_DROME (P45447) Ecdysone-induced protein 78C (DR-78) 28 9.7

>EXB1A_MAIZE (P58738) Beta-expansin 1a precursor (Pollen allergen Zea m 1) (Zea|
           m I)
          Length = 269

 Score = 37.0 bits (84), Expect = 0.021
 Identities = 15/24 (62%), Positives = 19/24 (79%)
 Frame = -2

Query: 433 KLVANNVIPANWRPNTDYRSXVQF 362
           K++A +VIPANWRP+  Y S VQF
Sbjct: 245 KVIAKDVIPANWRPDAVYTSNVQF 268



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>EXPB4_ARATH (Q9SHD1) Putative beta-expansin 4 precursor (AtEXPB4) (At-EXPB4)|
           (Ath-ExpBeta-1.1)
          Length = 259

 Score = 37.0 bits (84), Expect = 0.021
 Identities = 15/23 (65%), Positives = 18/23 (78%)
 Frame = -2

Query: 430 LVANNVIPANWRPNTDYRSXVQF 362
           +VA NVIPANW+P+  YRS V F
Sbjct: 237 IVAYNVIPANWKPDESYRSIVNF 259



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>EXB1B_MAIZE (Q07154) Beta-expansin 1b (Pollen allergen Zea m 1) (Zea m I)|
           (Fragment)
          Length = 191

 Score = 36.6 bits (83), Expect = 0.027
 Identities = 14/24 (58%), Positives = 19/24 (79%)
 Frame = -2

Query: 433 KLVANNVIPANWRPNTDYRSXVQF 362
           K++A ++IPANWRP+  Y S VQF
Sbjct: 167 KVIAKDIIPANWRPDAVYTSNVQF 190



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>EXPB2_ARATH (Q9SHY6) Putative beta-expansin 2 precursor (AtEXPB2) (At-EXPB2)|
           (Ath-ExpBeta-1.4)
          Length = 273

 Score = 35.0 bits (79), Expect = 0.079
 Identities = 14/23 (60%), Positives = 18/23 (78%)
 Frame = -2

Query: 430 LVANNVIPANWRPNTDYRSXVQF 362
           +VA+NVIPANW+P   Y+S V F
Sbjct: 251 VVASNVIPANWQPGAIYKSNVNF 273



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>MPAC1_CYNDA (O04701) Major pollen allergen Cyn d 1|
          Length = 246

 Score = 34.7 bits (78), Expect = 0.10
 Identities = 14/23 (60%), Positives = 19/23 (82%)
 Frame = -2

Query: 430 LVANNVIPANWRPNTDYRSXVQF 362
           LV ++VIPANW+P+T Y S +QF
Sbjct: 222 LVQDDVIPANWKPDTVYTSKLQF 244



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>EXPB1_ARATH (Q9SKU2) Beta-expansin 1 precursor (AtEXPB1) (At-EXPB1)|
           (Ath-ExpBeta-1.5)
          Length = 271

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -2

Query: 430 LVANNVIPANWRPNTDYRSXVQFS 359
           L A +VIP+NW P   Y S + FS
Sbjct: 245 LSATDVIPSNWVPKATYTSRLNFS 268



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>EXPB5_ARATH (Q9M203) Putative beta-expansin 5 precursor (AtEXPB5) (At-EXPB5)|
           (Ath-ExpBeta-1.3)
          Length = 264

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -2

Query: 433 KLVANNVIPANWRPNTDYRSXVQF 362
           K++A  VIP  W P   Y S V F
Sbjct: 234 KIIAKGVIPEKWSPGAIYHSKVNF 257



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>EXPB3_ARATH (Q9M0I2) Beta-expansin 3 precursor (AtEXPB3) (At-EXPB3)|
           (Ath-ExpBeta-1.6)
          Length = 264

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 430 LVANNVIPANWRPNTDYRSXVQFS 359
           L A +V+P NW P   Y S + FS
Sbjct: 238 LSATDVVPRNWAPKATYSSRLNFS 261



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>E78C_DROME (P45447) Ecdysone-induced protein 78C (DR-78)|
          Length = 866

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 6/61 (9%)
 Frame = -1

Query: 422 QQCHPGQLEAQHRLPL------LXPVQLIGPDRPMSGHVRXHHARMHACLRSGPSAGCSS 261
           QQ HPGQ + Q    L      L  +  +    P S H     +   +   S P +GCSS
Sbjct: 200 QQQHPGQQQHQLNCTLSNGGGALYTISSVHQFGPASNHNTSSSSPSSSAAHSSPDSGCSS 259

Query: 260 S 258
           +
Sbjct: 260 A 260


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,992,071
Number of Sequences: 219361
Number of extensions: 1111207
Number of successful extensions: 3184
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3183
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2511994855
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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