ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart06h01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC139171.3| Oryza sativa (japonica cultivar-group) chromosome... 44 0.30
2gb|AC135596.4| Oryza sativa (japonica cultivar-group) chromosome... 44 0.30
3dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.30
4gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 44 0.30
5gb|L25927.1|YSPSEQA Shuttle vector pJK148, complete sequence 42 1.2
6emb|AL031174.1|SPBC1A45P S.pombe chromosome II cosmid c1A4 left ... 42 1.2
7emb|AL021746.1|SPBC1E8 S.pombe chromosome II cosmid c1E8 42 1.2
8emb|CT033763.2| Medicago truncatula chromosome 5 clone mth2-139a... 42 1.2
9gb|M36910.1|YSPLEU1A S.pombe beta-isopropylmalate dehydrogenase ... 42 1.2
10gb|AC160127.2| Mus musculus BAC clone RP23-295O2 from chromosome... 40 4.7
11ref|NM_001110.2| Homo sapiens ADAM metallopeptidase domain 10 (A... 40 4.7
12ref|XM_535496.2| PREDICTED: Canis familiaris a disintegrin and m... 40 4.7
13ref|XM_858910.1| PREDICTED: Canis familiaris a disintegrin and m... 40 4.7
14gb|BC055087.1| Homo sapiens ADAM metallopeptidase domain 10, mRN... 40 4.7
15gb|BC104659.1| Homo sapiens ADAM metallopeptidase domain 10, mRN... 40 4.7
16emb|BX511000.12| Zebrafish DNA sequence from clone DKEY-217F4 in... 40 4.7
17gb|AC091046.2|AC091046 Homo sapiens chromosome 15 clone RP11-123... 40 4.7
18ref|NM_060016.2| Caenorhabditis elegans F32H2.5 (F32H2.5) mRNA, ... 40 4.7
19gb|AC018904.6|AC018904 Homo sapiens chromosome 15 clone RP11-50C... 40 4.7
20emb|Z81523.1|CEF32H2 Caenorhabditis elegans Cosmid F32H2, comple... 40 4.7
21dbj|AP002008.5| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 4.7
22emb|Y11658.1|ECVHL88 Equus caballus DNA for CA microsatellite, l... 40 4.7
23gb|AF009615.1|AF009615 Homo sapiens ADAM10 (ADAM10) mRNA, comple... 40 4.7
24gb|U60208.1|PGU60208 Porphyromonas gingivalis orf1, orf2 and orf... 40 4.7
25emb|AL713979.6| Mouse DNA sequence from clone RP23-434O7 on chro... 40 4.7

>gb|AC139171.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0024B09,
              complete sequence
          Length = 132563

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 19     ttattccatcctttgcatccct 40
              ||||||||||||||||||||||
Sbjct: 118263 ttattccatcctttgcatccct 118242



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>gb|AC135596.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
            OSJNBa0032D10 map E20933S, complete sequence
          Length = 146118

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 19   ttattccatcctttgcatccct 40
            ||||||||||||||||||||||
Sbjct: 2651 ttattccatcctttgcatccct 2630



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 19       ttattccatcctttgcatccct 40
                ||||||||||||||||||||||
Sbjct: 10378652 ttattccatcctttgcatccct 10378631



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 19       ttattccatcctttgcatccct 40
                ||||||||||||||||||||||
Sbjct: 10450349 ttattccatcctttgcatccct 10450328



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>gb|L25927.1|YSPSEQA Shuttle vector pJK148, complete sequence
          Length = 5343

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 57   aaaaattttataatagggtttaatg 81
            ||||||||| |||||||||||||||
Sbjct: 1410 aaaaattttgtaatagggtttaatg 1434



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>emb|AL031174.1|SPBC1A45P S.pombe chromosome II cosmid c1A4 left hand region 1-26184 bp
            Originates from chimeric cosmid
          Length = 26184

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 57   aaaaattttataatagggtttaatg 81
            ||||||||| |||||||||||||||
Sbjct: 2374 aaaaattttgtaatagggtttaatg 2350



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>emb|AL021746.1|SPBC1E8 S.pombe chromosome II cosmid c1E8
          Length = 19218

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 57    aaaaattttataatagggtttaatg 81
             ||||||||| |||||||||||||||
Sbjct: 18566 aaaaattttgtaatagggtttaatg 18542



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>emb|CT033763.2| Medicago truncatula chromosome 5 clone mth2-139a2, COMPLETE SEQUENCE
          Length = 132108

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 59    aaattttataatagggtttaa 79
             |||||||||||||||||||||
Sbjct: 82971 aaattttataatagggtttaa 82991



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>gb|M36910.1|YSPLEU1A S.pombe beta-isopropylmalate dehydrogenase (leu1) gene, complete cds
          Length = 2575

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 57   aaaaattttataatagggtttaatg 81
            ||||||||| |||||||||||||||
Sbjct: 1564 aaaaattttgtaatagggtttaatg 1588



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>gb|AC160127.2| Mus musculus BAC clone RP23-295O2 from chromosome 9, complete sequence
          Length = 205289

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 101   acattttacatgaggagtac 120
             ||||||||||||||||||||
Sbjct: 86957 acattttacatgaggagtac 86976



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>ref|NM_001110.2| Homo sapiens ADAM metallopeptidase domain 10 (ADAM10), mRNA
          Length = 3927

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 52   agcggaaaaattttataata 71
            ||||||||||||||||||||
Sbjct: 3241 agcggaaaaattttataata 3222



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>ref|XM_535496.2| PREDICTED: Canis familiaris a disintegrin and metalloprotease domain
            10, transcript variant 1 (ADAM10), mRNA
          Length = 4434

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 52   agcggaaaaattttataata 71
            ||||||||||||||||||||
Sbjct: 2823 agcggaaaaattttataata 2804



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>ref|XM_858910.1| PREDICTED: Canis familiaris a disintegrin and metalloprotease domain
            10, transcript variant 2 (ADAM10), mRNA
          Length = 4219

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 52   agcggaaaaattttataata 71
            ||||||||||||||||||||
Sbjct: 2608 agcggaaaaattttataata 2589



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>gb|BC055087.1| Homo sapiens ADAM metallopeptidase domain 10, mRNA (cDNA clone
           IMAGE:4698521)
          Length = 895

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 52  agcggaaaaattttataata 71
           ||||||||||||||||||||
Sbjct: 740 agcggaaaaattttataata 721



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>gb|BC104659.1| Homo sapiens ADAM metallopeptidase domain 10, mRNA (cDNA clone
           IMAGE:4657963)
          Length = 890

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 52  agcggaaaaattttataata 71
           ||||||||||||||||||||
Sbjct: 740 agcggaaaaattttataata 721



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>emb|BX511000.12| Zebrafish DNA sequence from clone DKEY-217F4 in linkage group 2, complete
              sequence
          Length = 191671

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 62     ttttataatagggtttaatg 81
              ||||||||||||||||||||
Sbjct: 164634 ttttataatagggtttaatg 164615



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>gb|AC091046.2|AC091046 Homo sapiens chromosome 15 clone RP11-123C21 map 15q21.3, complete
             sequence
          Length = 186846

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 52    agcggaaaaattttataata 71
             ||||||||||||||||||||
Sbjct: 32131 agcggaaaaattttataata 32150



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>ref|NM_060016.2| Caenorhabditis elegans F32H2.5 (F32H2.5) mRNA, complete cds
          Length = 8334

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 299  atcgttgagcttgatcttca 318
            ||||||||||||||||||||
Sbjct: 4660 atcgttgagcttgatcttca 4679



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>gb|AC018904.6|AC018904 Homo sapiens chromosome 15 clone RP11-50C13 map 15q21.3, complete
              sequence
          Length = 158091

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 52     agcggaaaaattttataata 71
              ||||||||||||||||||||
Sbjct: 141447 agcggaaaaattttataata 141466



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>emb|Z81523.1|CEF32H2 Caenorhabditis elegans Cosmid F32H2, complete sequence
          Length = 40879

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 299   atcgttgagcttgatcttca 318
             ||||||||||||||||||||
Sbjct: 20037 atcgttgagcttgatcttca 20018



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>dbj|AP002008.5| Homo sapiens genomic DNA, chromosome 11q clone:RP11-794P6, complete
              sequences
          Length = 194973

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 134    tgggaaataggttaaaacat 153
              ||||||||||||||||||||
Sbjct: 137070 tgggaaataggttaaaacat 137051



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>emb|Y11658.1|ECVHL88 Equus caballus DNA for CA microsatellite, locus ECVHL88
          Length = 595

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 107 tacatgaggagtacacacac 126
           ||||||||||||||||||||
Sbjct: 317 tacatgaggagtacacacac 298



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>gb|AF009615.1|AF009615 Homo sapiens ADAM10 (ADAM10) mRNA, complete cds
          Length = 3410

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 52   agcggaaaaattttataata 71
            ||||||||||||||||||||
Sbjct: 3266 agcggaaaaattttataata 3247



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>gb|U60208.1|PGU60208 Porphyromonas gingivalis orf1, orf2 and orf3 genes, complete cds
          Length = 4608

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 25   catcctttgcatccctatgt 44
            ||||||||||||||||||||
Sbjct: 2240 catcctttgcatccctatgt 2259



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>emb|AL713979.6| Mouse DNA sequence from clone RP23-434O7 on chromosome X, complete
              sequence
          Length = 148507

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 275    agtgtcatggtatttttcca 294
              ||||||||||||||||||||
Sbjct: 139391 agtgtcatggtatttttcca 139410


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,249,821
Number of Sequences: 3902068
Number of extensions: 3249821
Number of successful extensions: 64931
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 64879
Number of HSP's gapped (non-prelim): 52
length of query: 351
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 329
effective length of database: 17,147,199,772
effective search space: 5641428724988
effective search space used: 5641428724988
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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