Clone Name | rbart06h01 |
---|---|
Clone Library Name | barley_pub |
>gb|AC139171.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0024B09, complete sequence Length = 132563 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Minus Query: 19 ttattccatcctttgcatccct 40 |||||||||||||||||||||| Sbjct: 118263 ttattccatcctttgcatccct 118242
>gb|AC135596.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0032D10 map E20933S, complete sequence Length = 146118 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Minus Query: 19 ttattccatcctttgcatccct 40 |||||||||||||||||||||| Sbjct: 2651 ttattccatcctttgcatccct 2630
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Minus Query: 19 ttattccatcctttgcatccct 40 |||||||||||||||||||||| Sbjct: 10378652 ttattccatcctttgcatccct 10378631
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Minus Query: 19 ttattccatcctttgcatccct 40 |||||||||||||||||||||| Sbjct: 10450349 ttattccatcctttgcatccct 10450328
>gb|L25927.1|YSPSEQA Shuttle vector pJK148, complete sequence Length = 5343 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 57 aaaaattttataatagggtttaatg 81 ||||||||| ||||||||||||||| Sbjct: 1410 aaaaattttgtaatagggtttaatg 1434
>emb|AL031174.1|SPBC1A45P S.pombe chromosome II cosmid c1A4 left hand region 1-26184 bp Originates from chimeric cosmid Length = 26184 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 57 aaaaattttataatagggtttaatg 81 ||||||||| ||||||||||||||| Sbjct: 2374 aaaaattttgtaatagggtttaatg 2350
>emb|AL021746.1|SPBC1E8 S.pombe chromosome II cosmid c1E8 Length = 19218 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 57 aaaaattttataatagggtttaatg 81 ||||||||| ||||||||||||||| Sbjct: 18566 aaaaattttgtaatagggtttaatg 18542
>emb|CT033763.2| Medicago truncatula chromosome 5 clone mth2-139a2, COMPLETE SEQUENCE Length = 132108 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 59 aaattttataatagggtttaa 79 ||||||||||||||||||||| Sbjct: 82971 aaattttataatagggtttaa 82991
>gb|M36910.1|YSPLEU1A S.pombe beta-isopropylmalate dehydrogenase (leu1) gene, complete cds Length = 2575 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 57 aaaaattttataatagggtttaatg 81 ||||||||| ||||||||||||||| Sbjct: 1564 aaaaattttgtaatagggtttaatg 1588
>gb|AC160127.2| Mus musculus BAC clone RP23-295O2 from chromosome 9, complete sequence Length = 205289 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 101 acattttacatgaggagtac 120 |||||||||||||||||||| Sbjct: 86957 acattttacatgaggagtac 86976
>ref|NM_001110.2| Homo sapiens ADAM metallopeptidase domain 10 (ADAM10), mRNA Length = 3927 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 agcggaaaaattttataata 71 |||||||||||||||||||| Sbjct: 3241 agcggaaaaattttataata 3222
>ref|XM_535496.2| PREDICTED: Canis familiaris a disintegrin and metalloprotease domain 10, transcript variant 1 (ADAM10), mRNA Length = 4434 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 agcggaaaaattttataata 71 |||||||||||||||||||| Sbjct: 2823 agcggaaaaattttataata 2804
>ref|XM_858910.1| PREDICTED: Canis familiaris a disintegrin and metalloprotease domain 10, transcript variant 2 (ADAM10), mRNA Length = 4219 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 agcggaaaaattttataata 71 |||||||||||||||||||| Sbjct: 2608 agcggaaaaattttataata 2589
>gb|BC055087.1| Homo sapiens ADAM metallopeptidase domain 10, mRNA (cDNA clone IMAGE:4698521) Length = 895 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 agcggaaaaattttataata 71 |||||||||||||||||||| Sbjct: 740 agcggaaaaattttataata 721
>gb|BC104659.1| Homo sapiens ADAM metallopeptidase domain 10, mRNA (cDNA clone IMAGE:4657963) Length = 890 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 agcggaaaaattttataata 71 |||||||||||||||||||| Sbjct: 740 agcggaaaaattttataata 721
>emb|BX511000.12| Zebrafish DNA sequence from clone DKEY-217F4 in linkage group 2, complete sequence Length = 191671 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 ttttataatagggtttaatg 81 |||||||||||||||||||| Sbjct: 164634 ttttataatagggtttaatg 164615
>gb|AC091046.2|AC091046 Homo sapiens chromosome 15 clone RP11-123C21 map 15q21.3, complete sequence Length = 186846 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 52 agcggaaaaattttataata 71 |||||||||||||||||||| Sbjct: 32131 agcggaaaaattttataata 32150
>ref|NM_060016.2| Caenorhabditis elegans F32H2.5 (F32H2.5) mRNA, complete cds Length = 8334 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 299 atcgttgagcttgatcttca 318 |||||||||||||||||||| Sbjct: 4660 atcgttgagcttgatcttca 4679
>gb|AC018904.6|AC018904 Homo sapiens chromosome 15 clone RP11-50C13 map 15q21.3, complete sequence Length = 158091 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 52 agcggaaaaattttataata 71 |||||||||||||||||||| Sbjct: 141447 agcggaaaaattttataata 141466
>emb|Z81523.1|CEF32H2 Caenorhabditis elegans Cosmid F32H2, complete sequence Length = 40879 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 299 atcgttgagcttgatcttca 318 |||||||||||||||||||| Sbjct: 20037 atcgttgagcttgatcttca 20018
>dbj|AP002008.5| Homo sapiens genomic DNA, chromosome 11q clone:RP11-794P6, complete sequences Length = 194973 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 134 tgggaaataggttaaaacat 153 |||||||||||||||||||| Sbjct: 137070 tgggaaataggttaaaacat 137051
>emb|Y11658.1|ECVHL88 Equus caballus DNA for CA microsatellite, locus ECVHL88 Length = 595 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 107 tacatgaggagtacacacac 126 |||||||||||||||||||| Sbjct: 317 tacatgaggagtacacacac 298
>gb|AF009615.1|AF009615 Homo sapiens ADAM10 (ADAM10) mRNA, complete cds Length = 3410 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 agcggaaaaattttataata 71 |||||||||||||||||||| Sbjct: 3266 agcggaaaaattttataata 3247
>gb|U60208.1|PGU60208 Porphyromonas gingivalis orf1, orf2 and orf3 genes, complete cds Length = 4608 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 25 catcctttgcatccctatgt 44 |||||||||||||||||||| Sbjct: 2240 catcctttgcatccctatgt 2259
>emb|AL713979.6| Mouse DNA sequence from clone RP23-434O7 on chromosome X, complete sequence Length = 148507 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 275 agtgtcatggtatttttcca 294 |||||||||||||||||||| Sbjct: 139391 agtgtcatggtatttttcca 139410 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,249,821 Number of Sequences: 3902068 Number of extensions: 3249821 Number of successful extensions: 64931 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 25 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 64879 Number of HSP's gapped (non-prelim): 52 length of query: 351 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 329 effective length of database: 17,147,199,772 effective search space: 5641428724988 effective search space used: 5641428724988 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)