ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart06g11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC151665.26| Medicago truncatula clone mth2-7k4, complete seq... 44 0.26
2gb|AC174354.6| Medicago truncatula clone mth2-8m12, complete seq... 44 0.26
3emb|BX927179.9| Zebrafish DNA sequence from clone CH211-194N20 i... 42 1.0
4gb|AE009951.2| Fusobacterium nucleatum subsp. nucleatum ATCC 255... 42 1.0
5emb|AL808120.9| Mouse DNA sequence from clone RP23-418E2 on chro... 42 1.0
6gb|AY485422.1| Aotus sp. PDE-2004 ASPM mRNA, complete cds 40 4.0
7gb|AY485419.1| Saimiri boliviensis isolate SqMon1 ASPM mRNA, com... 40 4.0
8gb|AC132242.2| Mus musculus BAC clone RP24-413O2 from chromosome... 40 4.0
9gb|AC122434.2| Mus musculus BAC clone RP24-198G2 from chromosome... 40 4.0
10emb|AL158850.8| Human DNA sequence from clone RP3-522B19 on chro... 40 4.0
11gb|AF326506.1|AF326506 Zea mays tonoplast membrane integral prot... 40 4.0

>gb|AC151665.26| Medicago truncatula clone mth2-7k4, complete sequence
          Length = 135880

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 58    catcttttggagttgctcctta 79
             ||||||||||||||||||||||
Sbjct: 96015 catcttttggagttgctcctta 96036



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>gb|AC174354.6| Medicago truncatula clone mth2-8m12, complete sequence
          Length = 122859

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 58    catcttttggagttgctcctta 79
             ||||||||||||||||||||||
Sbjct: 87347 catcttttggagttgctcctta 87368



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>emb|BX927179.9| Zebrafish DNA sequence from clone CH211-194N20 in linkage group 5,
             complete sequence
          Length = 121960

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 234   ttcaccatgaagaccatctca 254
             |||||||||||||||||||||
Sbjct: 81170 ttcaccatgaagaccatctca 81150



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>gb|AE009951.2| Fusobacterium nucleatum subsp. nucleatum ATCC 25586, complete genome
          Length = 2174500

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 58     catcttttggagttgctcctt 78
              |||||||||||||||||||||
Sbjct: 515051 catcttttggagttgctcctt 515071



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>emb|AL808120.9| Mouse DNA sequence from clone RP23-418E2 on chromosome X, complete
             sequence
          Length = 148328

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 109   aaacaaatctttcagcaacat 129
             |||||||||||||||||||||
Sbjct: 50846 aaacaaatctttcagcaacat 50866



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>gb|AY485422.1| Aotus sp. PDE-2004 ASPM mRNA, complete cds
          Length = 10422

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 159  gcaaaatgcaattacaagta 178
            ||||||||||||||||||||
Sbjct: 4298 gcaaaatgcaattacaagta 4317



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>gb|AY485419.1| Saimiri boliviensis isolate SqMon1 ASPM mRNA, complete cds
          Length = 10410

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 159  gcaaaatgcaattacaagta 178
            ||||||||||||||||||||
Sbjct: 4283 gcaaaatgcaattacaagta 4302



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>gb|AC132242.2| Mus musculus BAC clone RP24-413O2 from chromosome 18, complete sequence
          Length = 177442

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 116   tctttcagcaacattgattg 135
             ||||||||||||||||||||
Sbjct: 92233 tctttcagcaacattgattg 92214



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>gb|AC122434.2| Mus musculus BAC clone RP24-198G2 from chromosome 8, complete sequence
          Length = 168940

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 96    tatatatggctggaaacaaa 115
             ||||||||||||||||||||
Sbjct: 32507 tatatatggctggaaacaaa 32526



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>emb|AL158850.8| Human DNA sequence from clone RP3-522B19 on chromosome 6 Contains part
             of a novel gene, the 3' end of the gene for novel protein
             DKFZp451A175 (similar to M. musculus muscle-derived
             protein MDP77) and part of a novel gene, complete sequence
          Length = 91351

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 242   gaagaccatctcaaagacaa 261
             ||||||||||||||||||||
Sbjct: 56140 gaagaccatctcaaagacaa 56159



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>gb|AF326506.1|AF326506 Zea mays tonoplast membrane integral protein ZmTIP4-2 mRNA,
           complete cds
          Length = 1255

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 213 agcagaggctcgggcgtcttcttcaccatgaa 244
           ||||| |||||| ||||||| |||||||||||
Sbjct: 887 agcagcggctcgtgcgtcttgttcaccatgaa 856


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,716,697
Number of Sequences: 3902068
Number of extensions: 2716697
Number of successful extensions: 52749
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 52721
Number of HSP's gapped (non-prelim): 28
length of query: 305
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 283
effective length of database: 17,147,199,772
effective search space: 4852657535476
effective search space used: 4852657535476
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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