ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart06g10 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 153 bits (77), Expect = 6e-34 Identities = 145/168 (86%) Strand = Plus / Minus Query: 286 tgatcagtcgacgtaaacgccgcaggtctctctgatctcgccttgggtgccggtgaggac 345 ||||||||||||||| | ||||||||| |||||| | ||| | ||||||||||||||| Sbjct: 264653 tgatcagtcgacgtagatgccgcaggtgggtctgatttggccgtcggtgccggtgaggac 264594 Query: 346 gccgaccctgcccatgttgatcatggcgacngcgaagtcggcgaagaagatgtcgaaaga 405 |||||||||||||||||||||||||| ||| |||||||||||||||||| |||||| Sbjct: 264593 gccgaccctgcccatgttgatcatggagacggcgaagtcggcgaagaaggtgtcgaggtt 264534 Query: 406 ggacgcgttgttcatgagggcgacgtaggcgcccgtgaggctgtcgtc 453 || ||||| |||||||| |||||||||||| |||||||||||||| Sbjct: 264533 ggtgtcgttggtcatgaggcggacgtaggcgccggtgaggctgtcgtc 264486
>dbj|AP005187.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0446F04 Length = 175390 Score = 153 bits (77), Expect = 6e-34 Identities = 145/168 (86%) Strand = Plus / Minus Query: 286 tgatcagtcgacgtaaacgccgcaggtctctctgatctcgccttgggtgccggtgaggac 345 ||||||||||||||| | ||||||||| |||||| | ||| | ||||||||||||||| Sbjct: 99517 tgatcagtcgacgtagatgccgcaggtgggtctgatttggccgtcggtgccggtgaggac 99458 Query: 346 gccgaccctgcccatgttgatcatggcgacngcgaagtcggcgaagaagatgtcgaaaga 405 |||||||||||||||||||||||||| ||| |||||||||||||||||| |||||| Sbjct: 99457 gccgaccctgcccatgttgatcatggagacggcgaagtcggcgaagaaggtgtcgaggtt 99398 Query: 406 ggacgcgttgttcatgagggcgacgtaggcgcccgtgaggctgtcgtc 453 || ||||| |||||||| |||||||||||| |||||||||||||| Sbjct: 99397 ggtgtcgttggtcatgaggcggacgtaggcgccggtgaggctgtcgtc 99350
>dbj|AP004673.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0617C02 Length = 135605 Score = 153 bits (77), Expect = 6e-34 Identities = 145/168 (86%) Strand = Plus / Minus Query: 286 tgatcagtcgacgtaaacgccgcaggtctctctgatctcgccttgggtgccggtgaggac 345 ||||||||||||||| | ||||||||| |||||| | ||| | ||||||||||||||| Sbjct: 16652 tgatcagtcgacgtagatgccgcaggtgggtctgatttggccgtcggtgccggtgaggac 16593 Query: 346 gccgaccctgcccatgttgatcatggcgacngcgaagtcggcgaagaagatgtcgaaaga 405 |||||||||||||||||||||||||| ||| |||||||||||||||||| |||||| Sbjct: 16592 gccgaccctgcccatgttgatcatggagacggcgaagtcggcgaagaaggtgtcgaggtt 16533 Query: 406 ggacgcgttgttcatgagggcgacgtaggcgcccgtgaggctgtcgtc 453 || ||||| |||||||| |||||||||||| |||||||||||||| Sbjct: 16532 ggtgtcgttggtcatgaggcggacgtaggcgccggtgaggctgtcgtc 16485
>ref|XM_476368.1| Oryza sativa (japonica cultivar-group), mRNA Length = 987 Score = 147 bits (74), Expect = 4e-32 Identities = 142/165 (86%) Strand = Plus / Minus Query: 289 tcagtcgacgtaaacgccgcaggtctctctgatctcgccttgggtgccggtgaggacgcc 348 |||||||||||| | ||||||||| |||||| | ||| | |||||||||||||||||| Sbjct: 987 tcagtcgacgtagatgccgcaggtgggtctgatttggccgtcggtgccggtgaggacgcc 928 Query: 349 gaccctgcccatgttgatcatggcgacngcgaagtcggcgaagaagatgtcgaaagagga 408 ||||||||||||||||||||||| ||| |||||||||||||||||| |||||| || Sbjct: 927 gaccctgcccatgttgatcatggagacggcgaagtcggcgaagaaggtgtcgaggttggt 868 Query: 409 cgcgttgttcatgagggcgacgtaggcgcccgtgaggctgtcgtc 453 ||||| |||||||| |||||||||||| |||||||||||||| Sbjct: 867 gtcgttggtcatgaggcggacgtaggcgccggtgaggctgtcgtc 823
>tpe|BN000625.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx96 gene for class III peroxidase 96 precursor, exons 1-3 Length = 1183 Score = 147 bits (74), Expect = 4e-32 Identities = 142/165 (86%) Strand = Plus / Minus Query: 289 tcagtcgacgtaaacgccgcaggtctctctgatctcgccttgggtgccggtgaggacgcc 348 |||||||||||| | ||||||||| |||||| | ||| | |||||||||||||||||| Sbjct: 1183 tcagtcgacgtagatgccgcaggtgggtctgatttggccgtcggtgccggtgaggacgcc 1124 Query: 349 gaccctgcccatgttgatcatggcgacngcgaagtcggcgaagaagatgtcgaaagagga 408 ||||||||||||||||||||||| ||| |||||||||||||||||| |||||| || Sbjct: 1123 gaccctgcccatgttgatcatggagacggcgaagtcggcgaagaaggtgtcgaggttggt 1064 Query: 409 cgcgttgttcatgagggcgacgtaggcgcccgtgaggctgtcgtc 453 ||||| |||||||| |||||||||||| |||||||||||||| Sbjct: 1063 gtcgttggtcatgaggcggacgtaggcgccggtgaggctgtcgtc 1019
>gb|AC113332.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1057_B02, complete sequence Length = 99795 Score = 60.0 bits (30), Expect = 7e-06 Identities = 65/77 (84%) Strand = Plus / Minus Query: 317 ctgatctcgccttgggtgccggtgaggacgccgaccctgcccatgttgatcatggcgacn 376 ||||||||||| ||| |||||||||| || |||| | |||||| |||| ||||| | | Sbjct: 42113 ctgatctcgccctggctgccggtgagcacttcgacgccgcccatcttgaccatggaggcg 42054 Query: 377 gcgaagtcggcgaagaa 393 ||||||||||||||||| Sbjct: 42053 gcgaagtcggcgaagaa 42037
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 60.0 bits (30), Expect = 7e-06 Identities = 65/77 (84%) Strand = Plus / Minus Query: 317 ctgatctcgccttgggtgccggtgaggacgccgaccctgcccatgttgatcatggcgacn 376 ||||||||||| ||| |||||||||| || |||| | |||||| |||| ||||| | | Sbjct: 24439440 ctgatctcgccctggctgccggtgagcacttcgacgccgcccatcttgaccatggaggcg 24439381 Query: 377 gcgaagtcggcgaagaa 393 ||||||||||||||||| Sbjct: 24439380 gcgaagtcggcgaagaa 24439364
>dbj|D14997.1|RICPEROX Oryza sativa (japonica cultivar-group) mRNA for peroxidase, complete cds Length = 1325 Score = 60.0 bits (30), Expect = 7e-06 Identities = 65/77 (84%) Strand = Plus / Minus Query: 317 ctgatctcgccttgggtgccggtgaggacgccgaccctgcccatgttgatcatggcgacn 376 ||||||||||| ||| |||||||||| || |||| | |||||| |||| ||||| | | Sbjct: 1021 ctgatctcgccctggctgccggtgagcacttcgacgccgcccatcttgaccatggaggcg 962 Query: 377 gcgaagtcggcgaagaa 393 ||||||||||||||||| Sbjct: 961 gcgaagtcggcgaagaa 945
>dbj|AK104950.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-110-A02, full insert sequence Length = 1347 Score = 60.0 bits (30), Expect = 7e-06 Identities = 65/77 (84%) Strand = Plus / Minus Query: 317 ctgatctcgccttgggtgccggtgaggacgccgaccctgcccatgttgatcatggcgacn 376 ||||||||||| ||| |||||||||| || |||| | |||||| |||| ||||| | | Sbjct: 1050 ctgatctcgccctggctgccggtgagcacttcgacgccgcccatcttgaccatggaggcg 991 Query: 377 gcgaagtcggcgaagaa 393 ||||||||||||||||| Sbjct: 990 gcgaagtcggcgaagaa 974
>dbj|AK066855.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013082J20, full insert sequence Length = 1348 Score = 60.0 bits (30), Expect = 7e-06 Identities = 65/77 (84%) Strand = Plus / Minus Query: 317 ctgatctcgccttgggtgccggtgaggacgccgaccctgcccatgttgatcatggcgacn 376 ||||||||||| ||| |||||||||| || |||| | |||||| |||| ||||| | | Sbjct: 1051 ctgatctcgccctggctgccggtgagcacttcgacgccgcccatcttgaccatggaggcg 992 Query: 377 gcgaagtcggcgaagaa 393 ||||||||||||||||| Sbjct: 991 gcgaagtcggcgaagaa 975
>tpe|BN000603.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx74 gene for class III peroxidase 74 precursor, exons 1-4 Length = 1311 Score = 60.0 bits (30), Expect = 7e-06 Identities = 65/77 (84%) Strand = Plus / Minus Query: 317 ctgatctcgccttgggtgccggtgaggacgccgaccctgcccatgttgatcatggcgacn 376 ||||||||||| ||| |||||||||| || |||| | |||||| |||| ||||| | | Sbjct: 1286 ctgatctcgccctggctgccggtgagcacttcgacgccgcccatcttgaccatggaggcg 1227 Query: 377 gcgaagtcggcgaagaa 393 ||||||||||||||||| Sbjct: 1226 gcgaagtcggcgaagaa 1210
>gb|AY108615.1| Zea mays PCO132912 mRNA sequence Length = 1231 Score = 52.0 bits (26), Expect = 0.002 Identities = 49/57 (85%) Strand = Plus / Minus Query: 331 ggtgccggtgaggacgccgaccctgcccatgttgatcatggcgacngcgaagtcggc 387 |||||||||||| |||||||| |||||| |||| ||||||| | ||||||||||| Sbjct: 933 ggtgccggtgagcacgccgacggagcccatcttgaccatggcggcggcgaagtcggc 877
>ref|XM_462938.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1115 Score = 50.1 bits (25), Expect = 0.006 Identities = 40/45 (88%) Strand = Plus / Minus Query: 319 gatctcgccttgggtgccggtgaggacgccgaccctgcccatgtt 363 |||||| || ||| |||||||||| ||||| |||||||||||||| Sbjct: 1088 gatctccccctggctgccggtgagcacgcccaccctgcccatgtt 1044
>gb|AC084767.11| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0057P11 map R606A, complete sequence Length = 163580 Score = 50.1 bits (25), Expect = 0.006 Identities = 40/45 (88%) Strand = Plus / Plus Query: 319 gatctcgccttgggtgccggtgaggacgccgaccctgcccatgtt 363 |||||| || ||| |||||||||| ||||| |||||||||||||| Sbjct: 55183 gatctccccctggctgccggtgagcacgcccaccctgcccatgtt 55227
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 50.1 bits (25), Expect = 0.006 Identities = 40/45 (88%) Strand = Plus / Minus Query: 319 gatctcgccttgggtgccggtgaggacgccgaccctgcccatgtt 363 |||||| || ||| |||||||||| ||||| |||||||||||||| Sbjct: 20076830 gatctccccctggctgccggtgagcacgcccaccctgcccatgtt 20076786 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 332 gtgccggtgaggacgccgacc 352 ||||||||||||||||||||| Sbjct: 21036724 gtgccggtgaggacgccgacc 21036704
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 50.1 bits (25), Expect = 0.006 Identities = 40/45 (88%) Strand = Plus / Minus Query: 319 gatctcgccttgggtgccggtgaggacgccgaccctgcccatgtt 363 |||||| || ||| |||||||||| ||||| |||||||||||||| Sbjct: 20069858 gatctccccctggctgccggtgagcacgcccaccctgcccatgtt 20069814 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 332 gtgccggtgaggacgccgacc 352 ||||||||||||||||||||| Sbjct: 21029753 gtgccggtgaggacgccgacc 21029733
>dbj|AK122030.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033112F15, full insert sequence Length = 1405 Score = 50.1 bits (25), Expect = 0.006 Identities = 40/45 (88%) Strand = Plus / Minus Query: 319 gatctcgccttgggtgccggtgaggacgccgaccctgcccatgtt 363 |||||| || ||| |||||||||| ||||| |||||||||||||| Sbjct: 1153 gatctccccctggctgccggtgagcacgcccaccctgcccatgtt 1109
>tpe|BN000578.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx49 gene for class III peroxidase 49 precursor, exons 1-4 Length = 5136 Score = 50.1 bits (25), Expect = 0.006 Identities = 40/45 (88%) Strand = Plus / Minus Query: 319 gatctcgccttgggtgccggtgaggacgccgaccctgcccatgtt 363 |||||| || ||| |||||||||| ||||| |||||||||||||| Sbjct: 5109 gatctccccctggctgccggtgagcacgcccaccctgcccatgtt 5065
>gb|BT017361.1| Zea mays clone EL01N0324D08.c mRNA sequence Length = 973 Score = 44.1 bits (22), Expect = 0.40 Identities = 28/30 (93%) Strand = Plus / Minus Query: 317 ctgatctcgccttgggtgccggtgaggacg 346 ||||||||||| | |||||||||||||||| Sbjct: 688 ctgatctcgccgtcggtgccggtgaggacg 659
>emb|CT005241.3| Pan troglodytes chromosome X clone PTB-093L20 map Xq28, complete sequence Length = 181643 Score = 44.1 bits (22), Expect = 0.40 Identities = 25/26 (96%) Strand = Plus / Minus Query: 62 agcaagaaaataaagtagtactacat 87 ||||| |||||||||||||||||||| Sbjct: 171844 agcaacaaaataaagtagtactacat 171819
>emb|AL445930.11| Human DNA sequence from clone RP11-366O20 on chromosome 9 Contains the 5' end of a novel gene, the PPP6C gene for protein phosphatase 6 (catalytic subunit), a novel gene, a phosphoribosyl pyrophosphate synthetase 1(PRPS1) pseudogene, a laminin receptor 1 (LAMR1) pseudogene, the 5' end of the gene for Rab9 effector p40 (RAB9P40), and five CpG islands, complete sequence Length = 169149 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 62 agcaagaaaataaagtagtact 83 |||||||||||||||||||||| Sbjct: 69084 agcaagaaaataaagtagtact 69105
>emb|AL109798.19|HSA558P14 Human DNA sequence from clone RP11-558P14 on chromosome Xp21.3-22.13 Contains the 5' end of the CDKL5 gene for cyclin-dependent kinase-like 5 and a CpG island, complete sequence Length = 95093 Score = 44.1 bits (22), Expect = 0.40 Identities = 25/26 (96%) Strand = Plus / Minus Query: 62 agcaagaaaataaagtagtactacat 87 ||||| |||||||||||||||||||| Sbjct: 56210 agcaacaaaataaagtagtactacat 56185
>emb|CT009582.3| Pan troglodytes chromosome X clone PTB-130G16 map Xq28, complete sequence Length = 195752 Score = 44.1 bits (22), Expect = 0.40 Identities = 25/26 (96%) Strand = Plus / Minus Query: 62 agcaagaaaataaagtagtactacat 87 ||||| |||||||||||||||||||| Sbjct: 54553 agcaacaaaataaagtagtactacat 54528
>ref|NM_189426.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 993 Score = 42.1 bits (21), Expect = 1.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 369 tggcgacngcgaagtcggcgaagaagatgtcg 400 ||||||| ||| |||||||| ||||||||||| Sbjct: 943 tggcgacggcgcagtcggcggagaagatgtcg 912
>gb|AC147962.1| Oryza sativa chromosome 3 BAC OSJNBa0083K01 genomic sequence, complete sequence Length = 167239 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 332 gtgccggtgaggacgccgacc 352 ||||||||||||||||||||| Sbjct: 48554 gtgccggtgaggacgccgacc 48574
>emb|AL163206.2|HS21C006 Homo sapiens chromosome 21 segment HS21C006 Length = 340000 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 62 agcaagaaaataaagtagtac 82 ||||||||||||||||||||| Sbjct: 114411 agcaagaaaataaagtagtac 114431
>gb|AC160031.8| Mus musculus 10 BAC RP24-395H7 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 191028 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 2 aaacaatccccttaagattta 22 ||||||||||||||||||||| Sbjct: 3247 aaacaatccccttaagattta 3227
>gb|AC125783.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBb0039K08, complete sequence Length = 122163 Score = 42.1 bits (21), Expect = 1.6 Identities = 42/49 (85%) Strand = Plus / Minus Query: 317 ctgatctcgccttgggtgccggtgaggacgccgaccctgcccatgttga 365 ||||||||||||| | ||||||||| |||||||| | |||||| |||| Sbjct: 17974 ctgatctcgccttcgccgccggtgagcacgccgacgccgcccatcttga 17926
>gb|AC128645.5| Oryza sativa chromosome 3 BAC OSJNBb0016P23 genomic sequence, complete sequence Length = 131250 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 332 gtgccggtgaggacgccgacc 352 ||||||||||||||||||||| Sbjct: 14480 gtgccggtgaggacgccgacc 14460
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 1.6 Identities = 42/49 (85%) Strand = Plus / Minus Query: 317 ctgatctcgccttgggtgccggtgaggacgccgaccctgcccatgttga 365 ||||||||||||| | ||||||||| |||||||| | |||||| |||| Sbjct: 25705631 ctgatctcgccttcgccgccggtgagcacgccgacgccgcccatcttga 25705583
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 369 tggcgacngcgaagtcggcgaagaagatgtcg 400 ||||||| ||| |||||||| ||||||||||| Sbjct: 42700082 tggcgacggcgcagtcggcggagaagatgtcg 42700051
>dbj|AP003448.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1656_A11 Length = 148887 Score = 42.1 bits (21), Expect = 1.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 369 tggcgacngcgaagtcggcgaagaagatgtcg 400 ||||||| ||| |||||||| ||||||||||| Sbjct: 32847 tggcgacggcgcagtcggcggagaagatgtcg 32816
>dbj|BS000009.1| Pan troglodytes chromosome 22 clone:PTB-118J15, map 22, complete sequences Length = 199914 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 62 agcaagaaaataaagtagtac 82 ||||||||||||||||||||| Sbjct: 119389 agcaagaaaataaagtagtac 119409
>dbj|AK122054.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033114J03, full insert sequence Length = 1352 Score = 42.1 bits (21), Expect = 1.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 369 tggcgacngcgaagtcggcgaagaagatgtcg 400 ||||||| ||| |||||||| ||||||||||| Sbjct: 1095 tggcgacggcgcagtcggcggagaagatgtcg 1064
>dbj|AK108713.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-150-B05, full insert sequence Length = 1346 Score = 42.1 bits (21), Expect = 1.6 Identities = 42/49 (85%) Strand = Plus / Minus Query: 317 ctgatctcgccttgggtgccggtgaggacgccgaccctgcccatgttga 365 ||||||||||||| | ||||||||| |||||||| | |||||| |||| Sbjct: 1078 ctgatctcgccttcgccgccggtgagcacgccgacgccgcccatcttga 1030
>gb|AF130247.2|AF130247 Homo sapiens clone 31B5 chromosome 21 map 21q11.2, complete sequence Length = 88869 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 62 agcaagaaaataaagtagtac 82 ||||||||||||||||||||| Sbjct: 9721 agcaagaaaataaagtagtac 9741
>tpe|BN000663.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx134 gene for class III peroxidase 134 precursor, exons 1-2 Length = 1524 Score = 42.1 bits (21), Expect = 1.6 Identities = 42/49 (85%) Strand = Plus / Minus Query: 317 ctgatctcgccttgggtgccggtgaggacgccgaccctgcccatgttga 365 ||||||||||||| | ||||||||| |||||||| | |||||| |||| Sbjct: 1499 ctgatctcgccttcgccgccggtgagcacgccgacgccgcccatcttga 1451
>gb|AF130249.1|AF130249 Homo sapiens PAC 126N20 derived from chromosome 21p11.2, complete sequence, containing STCH and an unknown gene Length = 97083 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 62 agcaagaaaataaagtagtac 82 ||||||||||||||||||||| Sbjct: 93268 agcaagaaaataaagtagtac 93288
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 1.6 Identities = 42/49 (85%) Strand = Plus / Minus Query: 317 ctgatctcgccttgggtgccggtgaggacgccgaccctgcccatgttga 365 ||||||||||||| | ||||||||| |||||||| | |||||| |||| Sbjct: 26024301 ctgatctcgccttcgccgccggtgagcacgccgacgccgcccatcttga 26024253
>gb|AC153512.2| Mus musculus 10 BAC RP23-18K14 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 209885 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 2 aaacaatccccttaagattta 22 ||||||||||||||||||||| Sbjct: 78399 aaacaatccccttaagattta 78419
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 377 gcgaagtcggcgaagaagatgtcg 400 |||||| ||||||||||||||||| Sbjct: 1469905 gcgaagccggcgaagaagatgtcg 1469928
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 377 gcgaagtcggcgaagaagatgtcg 400 |||||| ||||||||||||||||| Sbjct: 2700400 gcgaagccggcgaagaagatgtcg 2700423
>gb|AC009055.10| Homo sapiens chromosome 16 clone RP11-256I9, complete sequence Length = 170831 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 agcaagaaaataaagtagta 81 |||||||||||||||||||| Sbjct: 36360 agcaagaaaataaagtagta 36341
>emb|AL731540.4| Human DNA sequence from clone RP11-367H5 on chromosome 10 Contains the H2AFY2 gene for H2A histone family (member Y2), the gene for apoptosis-inducing factor (AIF)-homologous mitochondrion-associated inducer of death (AMID), a novel gene (MGC34695), the SARA1 gene for SAR1a gene homolog 1 (S. cerevisiae), the PP gene for pyrophosphatase (inorganic), a novel gene and five CpG islands, complete sequence Length = 186875 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 agcaagaaaataaagtagta 81 |||||||||||||||||||| Sbjct: 154853 agcaagaaaataaagtagta 154834
>emb|AL365259.23| Human DNA sequence from clone RP11-624M8 on chromosome 6 Contains part of a novel gene, complete sequence Length = 106607 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 aaccaaccaatgaacttctc 110 |||||||||||||||||||| Sbjct: 12138 aaccaaccaatgaacttctc 12157
>emb|AL365215.23| Human DNA sequence from clone RP11-416D8 on chromosome 10 Contains the 5' end of the RSU1 gene for Ras suppressor protein 1, the 3' end of the CUBN gene for cubilin (intrinsic factor-cobalamin receptor) and a CpG island, complete sequence Length = 184703 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 attttgaagcaagaaaataa 74 |||||||||||||||||||| Sbjct: 116594 attttgaagcaagaaaataa 116613
>emb|AL357394.11| Human DNA sequence from clone RP11-469B13 on chromosome 10, complete sequence Length = 185850 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 agcaagaaaataaagtagta 81 |||||||||||||||||||| Sbjct: 151735 agcaagaaaataaagtagta 151754
>emb|AL645790.8| Zebrafish DNA sequence from clone RP71-6L08 in linkage group 23 Contains the 3' part of a novel gene similar to CELSR (cadherin, EGF LAG seven-pass G-type receptor), part of a novel gene and a CpG island, complete sequence Length = 165257 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 agaaccaaccaatgaacttc 108 |||||||||||||||||||| Sbjct: 24785 agaaccaaccaatgaacttc 24804
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 377 gcgaagtcggcgaagaagatgtcg 400 |||||| ||||||||||||||||| Sbjct: 1683054 gcgaagccggcgaagaagatgtcg 1683031
>emb|AL662993.3|OSJN00195 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0015G09, complete sequence Length = 123375 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 50 acaaaattttgaagcaagaa 69 |||||||||||||||||||| Sbjct: 31202 acaaaattttgaagcaagaa 31183
>emb|AL645596.7| Mouse DNA sequence from clone RP23-301E19 on chromosome 11 Contains the Ccl11 and Ccl12 genes for chemokine (C-C motif) ligand 11 and 12, complete sequence Length = 63924 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 agcaagaaaataaagtagta 81 |||||||||||||||||||| Sbjct: 15580 agcaagaaaataaagtagta 15599
>emb|CR932804.1| Mus musculus chromosome 2, clone ResGen-475I1 strain 129/Sv, complete sequence Length = 127135 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 77 tagtactacatgagaaccaa 96 |||||||||||||||||||| Sbjct: 28533 tagtactacatgagaaccaa 28552
>gb|AC120053.4| Homo sapiens chromosome 8, clone CTD-2006H14, complete sequence Length = 124497 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 agcaagaaaataaagtagta 81 |||||||||||||||||||| Sbjct: 26089 agcaagaaaataaagtagta 26108
>gb|AC010834.19| Homo sapiens chromosome 8, clone RP11-10N23, complete sequence Length = 175967 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 agcaagaaaataaagtagta 81 |||||||||||||||||||| Sbjct: 44694 agcaagaaaataaagtagta 44675
>gb|BC099068.1| Xenopus laevis cDNA clone MGC:115737 IMAGE:6868864, complete cds Length = 2485 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 52 aaaattttgaagcaagaaaataaa 75 ||||||||||||||| |||||||| Sbjct: 2446 aaaattttgaagcaaaaaaataaa 2423
>gb|AC092962.4| Homo sapiens 3 BAC RP11-698E5 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 174698 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 agcaagaaaataaagtagta 81 |||||||||||||||||||| Sbjct: 98715 agcaagaaaataaagtagta 98696
>gb|AC012294.15| Mus musculus chromosome 11, clone RP23-328G11, complete sequence Length = 222121 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 agcaagaaaataaagtagta 81 |||||||||||||||||||| Sbjct: 77243 agcaagaaaataaagtagta 77224
>gb|AC107886.2| Homo sapiens chromosome 11, clone CTD-3064C13, complete sequence Length = 133892 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 agcaagaaaataaagtagta 81 |||||||||||||||||||| Sbjct: 72846 agcaagaaaataaagtagta 72827
>emb|AL117151.1|CNS01DQF Botrytis cinerea strain T4 cDNA library Length = 117 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 aaatgttacaatcgaaaaaa 144 |||||||||||||||||||| Sbjct: 92 aaatgttacaatcgaaaaaa 73
>emb|AL929034.17| Mouse DNA sequence from clone RP23-90F9 on chromosome 2, complete sequence Length = 161905 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 77 tagtactacatgagaaccaa 96 |||||||||||||||||||| Sbjct: 73905 tagtactacatgagaaccaa 73924
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 50 acaaaattttgaagcaagaa 69 |||||||||||||||||||| Sbjct: 8417827 acaaaattttgaagcaagaa 8417808
>dbj|AP001732.1| Homo sapiens genomic DNA, chromosome 21q, section 76/105 Length = 340000 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 55 attttgaagcaagaaaataaagta 78 ||||| |||||||||||||||||| Sbjct: 242564 attttaaagcaagaaaataaagta 242541
>gb|AC024267.18| Homo sapiens chromosome 17, clone RP11-20B24, complete sequence Length = 175020 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 56 ttttgaagcaagaaaataaagtag 79 ||||||||| |||||||||||||| Sbjct: 128206 ttttgaagccagaaaataaagtag 128183
>dbj|AK120419.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013094A11, full insert sequence Length = 4818 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 50 acaaaattttgaagcaagaa 69 |||||||||||||||||||| Sbjct: 3495 acaaaattttgaagcaagaa 3476
>dbj|AK120245.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013044J21, full insert sequence Length = 5429 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 50 acaaaattttgaagcaagaa 69 |||||||||||||||||||| Sbjct: 4052 acaaaattttgaagcaagaa 4033
>emb|AL954220.1| Pan troglodytes chromosome 22 clone PTB-091C04 map q21.2, complete sequence Length = 241304 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 55 attttgaagcaagaaaataaagta 78 ||||| |||||||||||||||||| Sbjct: 185333 attttaaagcaagaaaataaagta 185310
>dbj|AP001038.2| Homo sapiens genomic DNA, chromosome 21, clone:P178O22, ERG-ETS2 region, complete sequence Length = 141885 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 55 attttgaagcaagaaaataaagta 78 ||||| |||||||||||||||||| Sbjct: 116978 attttaaagcaagaaaataaagta 116955
>emb|AL928864.11| Zebrafish DNA sequence from clone CH211-10P21, complete sequence Length = 181508 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 aaaaacttgtggtgcatatg 159 |||||||||||||||||||| Sbjct: 143961 aaaaacttgtggtgcatatg 143980
>gb|AC145946.3| Gallus gallus BAC clone CH261-23O21 from chromosome unknown, complete sequence Length = 248690 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 ttttgaagcaagaaaataaa 75 |||||||||||||||||||| Sbjct: 182385 ttttgaagcaagaaaataaa 182404
>emb|AL713839.1|CNS07YOT Mus musculus chromosome 11 region in the Om locus area (D11Mit37-Scya6) clone 149H13 of library Caltech CITB-BAC from chromosome 11 of Mus musculus (mouse) Length = 240425 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 agcaagaaaataaagtagta 81 |||||||||||||||||||| Sbjct: 97107 agcaagaaaataaagtagta 97126
>emb|AL732625.8| Mouse DNA sequence from clone RP23-169H17 on chromosome 2, complete sequence Length = 224038 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 attttgaagcaagaaaataa 74 |||||||||||||||||||| Sbjct: 195444 attttgaagcaagaaaataa 195463
>emb|AL607034.16| Mouse DNA sequence from clone RP23-303K9 on chromosome 11, complete sequence Length = 143148 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 agcaagaaaataaagtagta 81 |||||||||||||||||||| Sbjct: 127569 agcaagaaaataaagtagta 127550 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,891,593 Number of Sequences: 3902068 Number of extensions: 3891593 Number of successful extensions: 71132 Number of sequences better than 10.0: 72 Number of HSP's better than 10.0 without gapping: 72 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 70713 Number of HSP's gapped (non-prelim): 416 length of query: 463 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 441 effective length of database: 17,147,199,772 effective search space: 7561915099452 effective search space used: 7561915099452 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
