ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart06g08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ACC4B_BRARE (Q708S3) Amiloride-sensitive cation channel 4-B (Aci... 32 0.57
2PRR37_ORYSA (Q689G8) Two-component response regulator-like PRR37... 29 3.7
3ACC4A_BRARE (Q708S4) Amiloride-sensitive cation channel 4-A (Aci... 29 3.7

>ACC4B_BRARE (Q708S3) Amiloride-sensitive cation channel 4-B (Acid-sensing ion|
           channel 4.2) (ZASIC4.2)
          Length = 558

 Score = 31.6 bits (70), Expect = 0.57
 Identities = 18/46 (39%), Positives = 23/46 (50%)
 Frame = -1

Query: 197 ACLAEQYAKVLIFPLFLCTLSNLNDFQLPV*IQIDIYHLCDLCHFP 60
           A L E+  + L FP    TL N+N F+       DIYHL +L   P
Sbjct: 102 AALREETRRELTFPAI--TLCNVNRFRFSALTDADIYHLANLTGLP 145



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>PRR37_ORYSA (Q689G8) Two-component response regulator-like PRR37|
           (Pseudo-response regulator 37) (OsPRR37)
          Length = 742

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +2

Query: 53  GERGNGTGHINDIYLSEFTQEVENHSDLTEYKER 154
           G  G+G+G  ND+YL  FTQ     + + +++++
Sbjct: 659 GGNGSGSGSGNDMYLKRFTQREHRVAAVIKFRQK 692



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>ACC4A_BRARE (Q708S4) Amiloride-sensitive cation channel 4-A (Acid-sensing ion|
           channel 4.1) (ZASIC4.1)
          Length = 539

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -1

Query: 191 LAEQYAKVLIFPLFLCTLSNLNDFQLPV*IQIDIYHLCDLCHFP 60
           L E+    ++FP    T+ N+N F+       DIYHL +L   P
Sbjct: 100 LNEEATPEMVFPAV--TICNINRFRFSALTDADIYHLANLTGLP 141


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,928,339
Number of Sequences: 219361
Number of extensions: 651577
Number of successful extensions: 1407
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1407
length of database: 80,573,946
effective HSP length: 58
effective length of database: 67,851,008
effective search space used: 1628424192
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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