>MCL1_SCHPO (Q9C107) Minichromosome loss protein 1|
          Length = 815

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = -1

Query: 229 HWMIPSKLKQRLPLVTNQLQQRRANKEAW 143
           HW IP + K    L TN+L++R++ +E++
Sbjct: 638 HWRIPGQAKWIPVLDTNELERRKSRQESY 666

>CPSF4_HUMAN (O95639) Cleavage and polyadenylation specificity factor, 30 kDa|
           subunit (CPSF 30 kDa subunit) (NS1 effector
           domain-binding protein 1) (Neb-1) (No arches homolog)
          Length = 269

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 18/62 (29%), Positives = 30/62 (48%)
 Frame = -1

Query: 340 ELPCPLSKQNFLPRNKQAPAILKTSPLLSKQNFLHKKHWMIPSKLKQRLPLVTNQLQQRR 161
           ELP   ++Q  LP+  Q PA    +P L + + L +      S  +QR P V   +Q + 
Sbjct: 170 ELPMGTTEQPPLPQQTQPPAKQSNNPPLQRSSSLIQLTSQNSSPNQQRTPQVIGVMQSQN 229

Query: 160 AN 155
           ++
Sbjct: 230 SS 231

>YWJA_BACSU (P45861) Hypothetical ABC transporter ATP-binding protein ywjA|
          Length = 575

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +3

Query: 150 SLFALLCCSWLVTRGSLCF 206
           +LF LLC +W V RGSL +
Sbjct: 252 TLFVLLCGTWFVIRGSLSY 270

>HOXM_AZOVI (P40591) Hydrogenase expression/formation protein hoxM|
          Length = 207

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +3

Query: 258 RSGDVFRIAGACLFLGRKFCFERGHGNSRISWRHG 362
           R GD  R+A A L LGR   +E G     +++RHG
Sbjct: 163 RDGDAERLAPAPLALGR---YEAGRPAEELAYRHG 194

>DDEF2_HUMAN (O43150) Development and differentiation-enhancing factor 2 (Pyk2|
           C-terminus-associated protein) (PAP)
           (Paxillin-associated protein with ARFGAP activity 3)
           (PAG3)
          Length = 1006

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -1

Query: 361 PCLQLIRELPCPLSKQNFLPRNKQAPAILKTSPLLSK 251
           P +  IR  P P    + LP+ K AP   K++PL +K
Sbjct: 869 PGISQIRPPPLPPQPPSRLPQKKPAPGADKSTPLTNK 905

>KSGA_LACAC (Q5FMG3) Dimethyladenosine transferase (EC 2.1.1.-)|
           (S-adenosylmethionine-6-N', N'-adenosyl(rRNA)
           dimethyltransferase) (16S rRNA dimethylase) (High level
           kasugamycin resistance protein ksgA) (Kasugamycin
           dimethyltransferase)
          Length = 294

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = -1

Query: 313 NFLPRNKQAPAILKTSPLLSKQNFLHKKH--WMIPSKLKQRLPLVTNQLQ 170
           +F+PR K   +++  +PL  +    ++KH  W++     QR   + N L+
Sbjct: 203 SFMPRPKVDSSVVVLTPLQERPKIENRKHFIWVVKMCFSQRRKTLNNNLK 252

>INVA_YEREN (P19196) Invasin|
          Length = 835

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -3

Query: 362 PVSPTDSGVAMSPFKAEFPSQEQAG-TGNSE 273
           PVS TD  V + P+K   P+    G TG SE
Sbjct: 386 PVSATDYNVVLPPYKPMAPASRTVGKTGESE 416

>PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 668

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +2

Query: 86  PDT*FKQQQPGSPQSQTHHPRFLVCSSLLQLVGYEGQPLL 205
           P + F    PG P S  HHP F         +G+ GQ L+
Sbjct: 432 PMSGFHHHPPGGPMSGPHHPMF---------IGHNGQGLV 462


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.317    0.130    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,246,414
Number of Sequences: 219361
Number of extensions: 966100
Number of successful extensions: 2518
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2518
length of database: 80,573,946
effective HSP length: 97
effective length of database: 59,295,929
effective search space used: 1423102296
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)