ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart06g02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CAHH_VACCV (P04195) Cell surface-binding protein (Carbonic anhyd... 30 3.5
2CAHH_VACCT (Q9JFA1) Cell surface-binding protein (Carbonic anhyd... 30 3.5
3CAHH_VACCC (P20508) Cell surface-binding protein (Carbonic anhyd... 30 3.5
4CAHH_VACCA (O57211) Cell surface-binding protein (Carbonic anhyd... 30 3.5
5CAHH_RABPU (Q6RZI9) Cell surface-binding protein (Carbonic anhyd... 30 3.5
6Y140_MYCGE (P47386) Hypothetical ATP-dependent helicase MG140 (E... 29 4.6
7YL126_MIMIV (Q5UPK2) Putative F-box protein L126 29 6.0
8GTR5_BOVIN (P58353) Solute carrier family 2, facilitated glucose... 29 6.0
9GTR5_HORSE (Q863Y9) Solute carrier family 2, facilitated glucose... 28 7.9

>CAHH_VACCV (P04195) Cell surface-binding protein (Carbonic anhydrase homolog)|
          Length = 304

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = +2

Query: 200 LPSLLSPTKFQTKTRRNACRXPPPRHHYCQSSPMQISGAAGIVR 331
           +P  LSP   +TK   +  R  P   HY +S P  I     +VR
Sbjct: 1   MPQQLSPINIETKKAISNARLKPLDIHYNESKPTTIQNTGKLVR 44



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>CAHH_VACCT (Q9JFA1) Cell surface-binding protein (Carbonic anhydrase homolog)|
          Length = 304

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = +2

Query: 200 LPSLLSPTKFQTKTRRNACRXPPPRHHYCQSSPMQISGAAGIVR 331
           +P  LSP   +TK   +  R  P   HY +S P  I     +VR
Sbjct: 1   MPQQLSPINIETKKAISNARLKPLDIHYNESKPTTIQNTGKLVR 44



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>CAHH_VACCC (P20508) Cell surface-binding protein (Carbonic anhydrase homolog)|
          Length = 304

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = +2

Query: 200 LPSLLSPTKFQTKTRRNACRXPPPRHHYCQSSPMQISGAAGIVR 331
           +P  LSP   +TK   +  R  P   HY +S P  I     +VR
Sbjct: 1   MPQQLSPINIETKKAISNARLKPLDIHYNESKPTTIQNTGKLVR 44



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>CAHH_VACCA (O57211) Cell surface-binding protein (Carbonic anhydrase homolog)|
          Length = 304

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = +2

Query: 200 LPSLLSPTKFQTKTRRNACRXPPPRHHYCQSSPMQISGAAGIVR 331
           +P  LSP   +TK   +  R  P   HY +S P  I     +VR
Sbjct: 1   MPQQLSPINIETKKAISNARLKPLDIHYNESKPTTIQNTGKLVR 44



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>CAHH_RABPU (Q6RZI9) Cell surface-binding protein (Carbonic anhydrase homolog)|
          Length = 304

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = +2

Query: 200 LPSLLSPTKFQTKTRRNACRXPPPRHHYCQSSPMQISGAAGIVR 331
           +P  LSP   +TK   +  R  P   HY +S P  I     +VR
Sbjct: 1   MPQQLSPINIETKKAISNARLKPLDIHYNESKPTTIQNTGKLVR 44



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>Y140_MYCGE (P47386) Hypothetical ATP-dependent helicase MG140 (EC 3.6.1.-)|
          Length = 1113

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +2

Query: 113 PAIALWQTPAKSKPLLHSEKKLE*EAFVSLPSLLSPTKFQT 235
           P   L+  P+    LL  + K + E + SL    SPTKF+T
Sbjct: 524 PKHVLFYKPSNKSQLLLKQLKQDVEQYTSLQRFQSPTKFET 564



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>YL126_MIMIV (Q5UPK2) Putative F-box protein L126|
          Length = 255

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +3

Query: 30  YIYGTSIFEYFHHSYRHKREYPMPMKIVQPLRY 128
           Y YG    E +H+SYR    Y  P  +   ++Y
Sbjct: 95  YNYGVIFLEKYHNSYRENEVYYKPYPLFDSIKY 127



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>GTR5_BOVIN (P58353) Solute carrier family 2, facilitated glucose transporter|
           member 5 (Glucose transporter type 5, small intestine)
           (Fructose transporter) (Fragment)
          Length = 204

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = -2

Query: 188 LLILAFFLNGGEVLIXPVSAIAQWLDNFHGHWVFPFVPV 72
           LL+   FL         V+    WL NF    VFPF+ V
Sbjct: 145 LLVTEIFLQSSRPAAYMVAGTVHWLSNFTVGLVFPFIQV 183



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>GTR5_HORSE (Q863Y9) Solute carrier family 2, facilitated glucose transporter|
           member 5 (Glucose transporter type 5, small intestine)
           (Fructose transporter)
          Length = 501

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 15/39 (38%), Positives = 16/39 (41%)
 Frame = -2

Query: 188 LLILAFFLNGGEVLIXPVSAIAQWLDNFHGHWVFPFVPV 72
           LLI   FL         V     WL NF    VFPF+ V
Sbjct: 397 LLITEVFLQSSRSAAYMVGGTVHWLSNFAVGLVFPFIQV 435


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,271,893
Number of Sequences: 219361
Number of extensions: 1142349
Number of successful extensions: 2778
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2777
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2677159704
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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